Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00144 * 2 1 4 4 C 1.50700 * 109.47316 * 270.00052 * 3 2 1 5 5 N 1.31700 * 126.18415 * 274.69259 * 4 3 2 6 6 C 1.34337 * 105.81916 * 179.85592 * 5 4 3 7 7 O 1.21899 * 126.56654 * 180.18261 * 6 5 4 8 8 O 1.34141 * 106.86421 * 0.40453 * 6 5 4 9 9 N 1.21334 * 109.55278 * 359.73863 * 8 6 5 10 10 H 0.97001 * 124.94172 * 179.97438 * 9 8 6 11 11 C 1.34777 * 119.99644 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99763 * 184.68691 * 11 2 1 13 13 C 1.47535 * 119.99958 * 4.68040 * 11 2 1 14 14 C 1.39659 * 120.20041 * 311.86107 * 13 11 2 15 15 C 1.37830 * 119.92274 * 180.02562 * 14 13 11 16 16 C 1.38578 * 120.31947 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40051 * 0.02562 * 16 15 14 18 18 C 1.38827 * 120.07467 * 0.02562 * 17 16 15 19 19 O 1.35522 * 120.16110 * 179.97438 * 18 17 16 20 20 C 1.34810 * 117.00016 * 354.03829 * 19 18 17 21 21 H 1.07998 * 119.99956 * 5.03948 * 20 19 18 22 22 C 1.38698 * 120.00076 * 185.03597 * 20 19 18 23 23 N 1.31517 * 120.00261 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47012 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47105 * 119.99909 * 24 22 20 27 27 H 1.48491 * 109.47758 * 240.00346 * 24 22 20 28 28 H 1.08996 * 109.47035 * 272.05753 * 1 2 3 29 29 H 1.09005 * 109.46684 * 32.05964 * 1 2 3 30 30 H 1.08994 * 109.47177 * 152.05571 * 1 2 3 31 31 H 1.08997 * 109.46723 * 30.00672 * 3 2 1 32 32 H 1.08998 * 109.46688 * 149.99828 * 3 2 1 33 33 H 1.08002 * 120.03916 * 359.97438 * 14 13 11 34 34 H 1.07999 * 119.83957 * 180.02562 * 15 14 13 35 35 H 1.07997 * 119.79511 * 179.74866 * 16 15 14 36 36 H 1.08006 * 119.96134 * 180.02562 * 17 16 15 37 37 H 0.96993 * 120.00396 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.4548 1.3275 -2.1828 6 6 3.2775 1.9528 -3.3585 7 8 3.9939 1.8686 -4.3412 8 8 2.1638 2.6914 -3.2424 9 7 1.6937 2.5458 -2.1334 10 1 0.8875 2.9779 -1.8105 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1691 0.0855 13 6 1.4048 -2.4427 -0.1053 14 6 0.2953 -2.6837 0.7080 15 6 -0.3860 -3.8774 0.6057 16 6 0.0241 -4.8414 -0.3016 17 6 1.1187 -4.6172 -1.1119 18 6 1.8177 -3.4211 -1.0218 19 8 2.8930 -3.1993 -1.8162 20 6 3.3083 -4.2261 -2.5848 21 1 2.7414 -5.1450 -2.6107 22 6 4.4636 -4.1024 -3.3423 23 7 5.1542 -2.9836 -3.3104 24 14 5.0394 -5.5254 -4.4067 25 1 4.0942 -6.6622 -4.2669 26 1 5.0871 -5.0937 -5.8267 27 1 6.3942 -5.9514 -3.9731 28 1 -0.3633 0.0369 1.0270 29 1 -0.3633 0.8710 -0.5455 30 1 -0.3633 -0.9078 -0.4815 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 -0.0280 -1.9358 1.4169 34 1 -1.2440 -4.0622 1.2350 35 1 -0.5135 -5.7754 -0.3719 36 1 1.4319 -5.3732 -1.8168 37 1 5.9623 -2.8972 -3.8398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363449597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = -3.589023 kcal Electronic energy + Delta-G solvation = -27076.945516 eV Core-core repulsion = 23017.352153 eV Total energy + Delta-G solvation = -4059.593363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.69902 -41.45176 -40.03788 -39.36864 -38.05867 -37.55529 -36.14369 -34.33471 -33.67962 -32.31173 -30.58616 -29.60074 -27.49090 -27.29332 -25.28094 -24.37993 -23.47718 -22.99710 -21.30804 -20.58928 -19.88871 -19.66045 -18.80518 -18.01770 -17.93204 -17.34360 -17.11682 -16.66359 -16.39555 -16.03222 -15.64297 -15.47280 -15.22607 -14.98042 -14.69804 -14.48280 -14.18965 -13.69920 -13.58312 -13.52289 -13.31660 -12.99170 -12.91705 -12.66449 -12.62047 -12.46082 -12.23841 -12.10843 -11.80598 -11.42993 -10.85698 -10.72149 -10.35293 -9.90176 -9.73259 -9.02166 -8.44359 -6.16771 -0.26125 0.26245 0.71496 0.74826 1.27815 1.39186 1.48182 1.48407 1.77371 2.09091 2.13111 2.17884 2.84041 2.91721 3.16705 3.47661 3.63538 3.77643 4.13300 4.17369 4.29615 4.31254 4.49560 4.58227 4.60522 4.67615 4.82048 4.99137 5.02333 5.08191 5.17229 5.47432 5.54186 5.58411 5.61767 5.74380 5.93197 6.20513 6.24698 6.29922 6.80836 6.94805 7.29104 7.77998 8.74988 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.006274 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.419267 B = 4461.731234 C = 6839.009281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.611 5.611 3 C 0.185 3.815 4 C 0.343 3.657 5 N -0.579 5.579 6 C 0.547 3.453 7 O -0.529 6.529 8 O -0.076 6.076 9 N -0.464 5.464 10 H 0.496 0.504 11 C 0.564 3.436 12 O -0.554 6.554 13 C -0.234 4.234 14 C -0.027 4.027 15 C -0.195 4.195 16 C -0.046 4.046 17 C -0.258 4.258 18 C 0.141 3.859 19 O -0.209 6.209 20 C -0.421 4.421 21 H 0.107 0.893 22 C -0.026 4.026 23 N -0.904 5.904 24 Si 1.018 2.982 25 H -0.241 1.241 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.112 0.888 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.781 9.475 12.868 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.347 5.347 3 C 0.060 3.940 4 C 0.071 3.929 5 N -0.341 5.341 6 C 0.297 3.703 7 O -0.414 6.414 8 O -0.097 6.097 9 N -0.135 5.135 10 H 0.357 0.643 11 C 0.354 3.646 12 O -0.430 6.430 13 C -0.238 4.238 14 C -0.045 4.045 15 C -0.213 4.213 16 C -0.065 4.065 17 C -0.277 4.277 18 C 0.088 3.912 19 O -0.113 6.113 20 C -0.497 4.497 21 H 0.124 0.876 22 C -0.225 4.225 23 N -0.540 5.540 24 Si 0.836 3.164 25 H -0.164 1.164 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.216 0.784 32 H 0.131 0.869 33 H 0.188 0.812 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.930 9.477 12.026 24.347 hybrid contribution 0.514 -0.149 -1.555 1.644 sum -18.416 9.327 10.471 23.147 Atomic orbital electron populations 1.22500 0.75557 1.04781 1.05163 1.47747 1.08880 1.03231 1.74797 1.20630 1.02946 0.87847 0.82578 1.26875 0.84090 0.83359 0.98542 1.73656 1.26930 1.29655 1.03836 1.22061 0.79645 0.79315 0.89297 1.91099 1.47345 1.67077 1.35875 1.85172 1.41883 1.62798 1.19806 1.42644 1.26580 1.42415 1.01840 0.64340 1.18628 0.86424 0.84906 0.74646 1.90858 1.16293 1.87564 1.48272 1.19122 1.03923 0.95379 1.05420 1.21393 0.89821 0.98311 0.94982 1.21201 1.03663 0.93919 1.02538 1.21398 0.92881 0.99781 0.92391 1.21256 1.01431 0.98094 1.06915 1.20046 0.87485 0.94027 0.89668 1.84023 1.39996 1.38870 1.48451 1.21906 1.09793 0.94566 1.23386 0.87580 1.26745 0.95209 1.01214 0.99359 1.70326 1.16242 1.27629 1.39785 0.84564 0.78884 0.76252 0.76655 1.16364 1.19859 1.19419 0.87442 0.87992 0.91573 0.78380 0.86948 0.81212 0.81602 0.83316 0.86628 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 9.06 127.77 1.16 1.83 16 2 N -0.61 -14.59 2.86 -854.93 -2.44 -17.03 16 3 C 0.19 3.33 6.08 85.63 0.52 3.85 16 4 C 0.34 9.00 7.81 138.21 1.08 10.08 16 5 N -0.58 -25.63 11.55 -431.21 -4.98 -30.61 16 6 C 0.55 24.32 9.62 130.01 1.25 25.57 16 7 O -0.53 -28.99 18.07 18.13 0.33 -28.66 16 8 O -0.08 -2.19 11.35 93.27 1.06 -1.13 16 9 N -0.46 -7.97 6.79 -53.63 -0.36 -8.33 16 10 H 0.50 1.10 8.96 -92.71 -0.83 0.27 16 11 C 0.56 22.78 6.97 86.70 0.60 23.38 16 12 O -0.55 -29.82 16.05 5.62 0.09 -29.73 16 13 C -0.23 -9.30 4.95 -19.99 -0.10 -9.40 16 14 C -0.03 -0.69 7.59 22.52 0.17 -0.52 16 15 C -0.19 -4.54 10.03 22.25 0.22 -4.32 16 16 C -0.05 -1.37 10.03 22.30 0.22 -1.14 16 17 C -0.26 -10.85 9.16 22.36 0.20 -10.65 16 18 C 0.14 7.11 6.63 22.91 0.15 7.27 16 19 O -0.21 -13.45 8.78 -10.41 -0.09 -13.54 16 20 C -0.42 -26.24 9.49 67.93 0.64 -25.60 16 21 H 0.11 5.95 5.21 -2.91 -0.02 5.94 16 22 C -0.03 -1.64 5.49 84.85 0.47 -1.17 16 23 N -0.90 -63.16 13.67 21.62 0.30 -62.86 16 24 Si 1.02 47.27 29.55 68.60 2.03 49.29 16 25 H -0.24 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.11 0.34 7.48 -2.39 -0.02 0.32 16 29 H 0.10 0.30 8.09 -2.38 -0.02 0.29 16 30 H 0.07 1.11 5.69 -2.39 -0.01 1.10 16 31 H 0.20 0.06 8.07 -2.39 -0.02 0.04 16 32 H 0.11 2.71 7.36 -2.39 -0.02 2.69 16 33 H 0.17 2.57 6.43 -2.91 -0.02 2.56 16 34 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 37 H 0.27 17.47 8.31 -92.71 -0.77 16.70 16 Total: -1.00 -118.11 330.26 2.85 -115.26 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.33 Total: 8.17 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.60 Total: 19.18 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -7.49 Total: -118.84 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: 1.38 Total: -73.07 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -118.11 2.85 -115.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363449597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.668 kcal (2) G-P(sol) polarization free energy of solvation -118.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds