Wall clock time and date at job start Tue Mar 31 2020 13:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39646 * 120.10840 * 354.95747 * 3 2 1 5 5 C 1.38207 * 119.95815 * 180.25783 * 4 3 2 6 6 F 1.35099 * 119.90641 * 179.76485 * 5 4 3 7 7 C 1.38469 * 120.17738 * 359.74119 * 5 4 3 8 8 C 1.38903 * 120.21159 * 0.02562 * 7 5 4 9 9 N 1.39965 * 119.97842 * 180.02562 * 8 7 5 10 10 C 1.34782 * 120.00088 * 144.09689 * 9 8 7 11 11 O 1.21587 * 119.99855 * 4.67067 * 10 9 8 12 12 N 1.34778 * 120.00186 * 184.66665 * 10 9 8 13 13 C 1.47019 * 125.64580 * 359.69288 * 12 10 9 14 14 C 1.54338 * 107.26351 * 178.84868 * 13 12 10 15 15 C 1.55155 * 103.02080 * 338.14229 * 14 13 12 16 16 O 1.42908 * 111.00248 * 277.23188 * 15 14 13 17 17 C 1.50697 * 111.03564 * 153.39657 * 15 14 13 18 18 H 1.08001 * 120.00177 * 275.25014 * 17 15 14 19 19 C 1.37878 * 119.99825 * 95.25573 * 17 15 14 20 20 N 1.31514 * 119.99680 * 171.64368 * 19 17 15 21 21 Si 1.86791 * 120.00286 * 351.64716 * 19 17 15 22 22 H 1.48502 * 109.47395 * 87.39606 * 21 19 17 23 23 H 1.48498 * 109.47453 * 207.39735 * 21 19 17 24 24 H 1.48501 * 109.47231 * 327.39300 * 21 19 17 25 25 C 1.47418 * 125.64662 * 179.97438 * 12 10 9 26 26 C 1.38633 * 120.03899 * 359.97438 * 8 7 5 27 27 H 1.08002 * 120.01965 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.89024 * 179.97438 * 7 5 4 29 29 H 0.96999 * 120.00367 * 324.09322 * 9 8 7 30 30 H 1.09001 * 109.88611 * 298.39207 * 13 12 10 31 31 H 1.08999 * 109.88716 * 59.55855 * 13 12 10 32 32 H 1.08999 * 110.85055 * 219.67353 * 14 13 12 33 33 H 1.09000 * 110.51396 * 96.45304 * 14 13 12 34 34 H 0.96700 * 113.99765 * 175.41964 * 16 15 14 35 35 H 0.97004 * 120.00070 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.37020 * 322.92952 * 25 12 10 37 37 H 1.09007 * 110.36933 * 85.14649 * 25 12 10 38 38 H 1.08002 * 120.08393 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -1.2024 0.1062 5 6 4.6511 -1.1977 0.1112 6 9 5.3283 -2.3618 0.2188 7 6 5.3435 -0.0032 0.0059 8 6 4.6535 1.1972 -0.1050 9 7 5.3583 2.4017 -0.2118 10 6 4.8829 3.3939 -0.9904 11 8 3.8010 3.2761 -1.5324 12 7 5.6069 4.5168 -1.1681 13 6 6.9214 4.7923 -0.5700 14 6 7.3734 6.1785 -1.0761 15 6 6.5415 6.3657 -2.3724 16 8 7.1611 5.7061 -3.4784 17 6 6.3259 7.8271 -2.6704 18 1 5.5084 8.3582 -2.2055 19 6 7.1722 8.4861 -3.5368 20 7 6.8919 9.7109 -3.9254 21 14 8.7166 7.6394 -4.1587 22 1 8.3942 6.8541 -5.3772 23 1 9.7438 8.6608 -4.4855 24 1 9.2399 6.7299 -3.1078 25 6 5.2093 5.6744 -1.9897 26 6 3.2672 1.2028 -0.1110 27 1 2.7315 -2.1356 0.1881 28 1 6.4235 -0.0049 0.0107 29 1 6.1888 2.5225 0.2746 30 1 6.8397 4.8010 0.5169 31 1 7.6380 4.0334 -0.8839 32 1 8.4404 6.1812 -1.2989 33 1 7.1288 6.9501 -0.3461 34 1 6.6431 5.7357 -4.2944 35 1 7.4874 10.1747 -4.5346 36 1 4.6837 5.3417 -2.8848 37 1 4.5810 6.3521 -1.4116 38 1 2.7299 2.1358 -0.1967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414482594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:45 Heat of formation + Delta-G solvation = -49.170201 kcal Electronic energy + Delta-G solvation = -25818.824391 eV Core-core repulsion = 21769.627269 eV Total energy + Delta-G solvation = -4049.197122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.28920 -40.91029 -39.36738 -37.95672 -36.70269 -35.00557 -34.80932 -32.46397 -31.44635 -30.90327 -29.56967 -28.44158 -25.48966 -24.60383 -23.48133 -22.50160 -20.30850 -19.97226 -19.63026 -18.20523 -17.59181 -16.92664 -16.78529 -16.52910 -16.06277 -15.94821 -15.68247 -15.29449 -15.02804 -14.60126 -14.22910 -14.07166 -13.77452 -13.74180 -13.49961 -13.01666 -12.82656 -12.69089 -12.49236 -12.33091 -12.11369 -12.06641 -11.81071 -11.68544 -11.13527 -10.66375 -10.62137 -10.47513 -10.34670 -10.08886 -9.39778 -9.24700 -8.83696 -8.66963 -8.61454 -8.21484 -6.29803 -4.41956 0.25002 0.73506 2.28315 2.40689 2.49652 3.11103 3.35860 3.37349 3.45037 3.46517 3.60327 3.83026 4.00320 4.38414 4.46218 4.59296 4.69016 4.83051 4.88303 4.98120 5.15889 5.25991 5.38514 5.51188 5.58871 5.66808 5.74189 5.85083 5.93915 6.02233 6.29439 6.36277 6.47033 6.49993 6.58807 6.88596 6.95712 7.17104 7.32324 7.86985 7.99770 8.44781 8.51431 8.70844 9.30451 10.79038 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002936 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.698230 B = 9535.892553 C =10290.293062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.259 3.741 3 C 0.021 3.979 4 C -0.130 4.130 5 C 0.122 3.878 6 F -0.131 7.131 7 C -0.159 4.159 8 C 0.207 3.793 9 N -0.687 5.687 10 C 0.718 3.282 11 O -0.577 6.577 12 N -0.618 5.618 13 C 0.095 3.905 14 C -0.119 4.119 15 C 0.221 3.779 16 O -0.559 6.559 17 C -0.556 4.556 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.883 5.883 21 Si 0.952 3.048 22 H -0.293 1.293 23 H -0.326 1.326 24 H -0.271 1.271 25 C 0.107 3.893 26 C -0.082 4.082 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.374 0.626 35 H 0.268 0.732 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -18.598 10.086 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.057 4.057 3 C 0.016 3.984 4 C -0.152 4.152 5 C 0.102 3.898 6 F -0.110 7.110 7 C -0.181 4.181 8 C 0.110 3.890 9 N -0.335 5.335 10 C 0.420 3.580 11 O -0.455 6.455 12 N -0.354 5.354 13 C -0.028 4.028 14 C -0.157 4.157 15 C 0.180 3.820 16 O -0.367 6.367 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.132 4.132 20 N -0.518 5.518 21 Si 0.788 3.212 22 H -0.221 1.221 23 H -0.257 1.257 24 H -0.197 1.197 25 C -0.016 4.016 26 C -0.106 4.106 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.248 0.752 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.223 0.777 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.381 -18.609 10.010 21.176 hybrid contribution 1.458 -0.323 -0.514 1.579 sum 0.076 -18.932 9.495 21.180 Atomic orbital electron populations 1.81266 1.11829 1.06968 1.08024 1.25385 0.92317 0.93968 0.94061 1.15422 0.84649 0.93525 1.04755 1.20992 0.92388 0.98434 1.03404 1.16901 0.89179 0.81251 1.02456 1.91546 1.79993 1.45955 1.93460 1.21022 1.01479 0.89830 1.05791 1.16890 0.90300 0.84565 0.97243 1.42668 1.27883 1.13051 1.49877 1.15403 0.83698 0.79290 0.79560 1.90924 1.20923 1.79961 1.53642 1.47758 1.20212 1.16296 1.51111 1.22177 0.84067 0.99884 0.96628 1.22941 1.01497 0.93311 0.97988 1.20228 0.86563 0.91490 0.83724 1.86121 1.49717 1.78687 1.22169 1.21088 1.16675 0.91871 1.29685 0.89920 1.25144 0.98530 0.94902 0.94669 1.69965 1.37359 1.12562 1.31889 0.85632 0.80633 0.75970 0.78984 1.22108 1.25748 1.19748 1.23119 0.99833 0.84409 0.94202 1.21478 0.92890 0.98597 0.97588 0.83659 0.83563 0.75177 0.92288 0.92029 0.90005 0.89439 0.77728 0.92244 0.90855 0.90786 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.46 18.54 41.84 0.78 -4.69 16 2 C 0.26 2.92 15.33 -22.47 -0.34 2.57 16 3 C 0.02 0.20 5.73 -106.97 -0.61 -0.42 16 4 C -0.13 -1.01 9.73 -39.07 -0.38 -1.39 16 5 C 0.12 0.98 7.29 -39.51 -0.29 0.69 16 6 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 7 C -0.16 -1.25 9.93 -39.25 -0.39 -1.64 16 8 C 0.21 2.06 6.28 -83.75 -0.53 1.54 16 9 N -0.69 -7.32 5.29 -14.26 -0.08 -7.40 16 10 C 0.72 10.78 8.33 -86.91 -0.72 10.06 16 11 O -0.58 -10.45 14.08 5.29 0.07 -10.37 16 12 N -0.62 -9.59 3.33 -176.25 -0.59 -10.18 16 13 C 0.10 1.27 6.16 -3.06 -0.02 1.25 16 14 C -0.12 -2.03 5.96 -24.89 -0.15 -2.18 16 15 C 0.22 4.41 0.70 -89.64 -0.06 4.35 16 16 O -0.56 -11.21 8.67 -35.23 -0.31 -11.52 16 17 C -0.56 -13.70 8.87 -34.44 -0.31 -14.00 16 18 H 0.08 2.23 8.01 -52.49 -0.42 1.81 16 19 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 20 N -0.88 -25.02 13.96 55.43 0.77 -24.25 16 21 Si 0.95 21.96 24.71 -169.99 -4.20 17.76 16 22 H -0.29 -6.66 7.10 56.52 0.40 -6.26 16 23 H -0.33 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.27 -6.06 5.60 56.52 0.32 -5.75 16 25 C 0.11 1.95 6.09 -2.54 -0.02 1.93 16 26 C -0.08 -0.90 8.39 -38.96 -0.33 -1.23 16 27 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.41 3.21 7.82 -40.82 -0.32 2.89 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.44 6.84 -51.93 -0.36 1.08 16 33 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 34 H 0.37 6.91 8.64 45.56 0.39 7.30 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 37 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 38 H 0.16 2.06 6.27 -52.49 -0.33 1.73 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -30.81 332.24 -5.93 -36.74 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -3.19 Total: 6.60 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -4.24 Total: 3.35 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.89 Total: -46.51 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.23 Total: -21.89 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.20 Total: 17.76 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.81 -5.93 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414482594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.426 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds