Wall clock time and date at job start Tue Mar 31 2020 13:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47210 * 270.00382 * 3 2 1 5 5 H 1.48499 * 109.47102 * 30.00244 * 3 2 1 6 6 H 1.48503 * 109.47221 * 150.00541 * 3 2 1 7 7 C 1.37876 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99853 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00318 * 180.02562 * 10 9 7 12 12 O 1.21669 * 119.99525 * 359.97438 * 11 10 9 13 13 C 1.46693 * 120.00207 * 180.02562 * 11 10 9 14 14 N 1.29759 * 119.55552 * 359.97438 * 13 11 10 15 15 N 1.39861 * 121.13305 * 180.13222 * 14 13 11 16 16 C 1.40075 * 119.79806 * 199.16851 * 15 14 13 17 17 C 1.38877 * 120.04185 * 311.18587 * 16 15 14 18 18 C 1.38096 * 119.95107 * 179.71917 * 17 16 15 19 19 C 1.38494 * 120.04470 * 0.55559 * 18 17 16 20 20 F 1.35100 * 119.95697 * 179.70277 * 19 18 17 21 21 C 1.38491 * 120.09159 * 359.71693 * 19 18 17 22 22 C 1.38094 * 120.04797 * 0.02562 * 21 19 18 23 23 C 1.34746 * 120.40878 * 19.16616 * 15 14 13 24 24 O 1.21241 * 120.12146 * 179.75893 * 23 15 14 25 25 C 1.50774 * 119.76045 * 359.73431 * 23 15 14 26 26 C 1.50545 * 119.55164 * 179.97438 * 13 11 10 27 27 H 0.97006 * 119.99776 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47147 * 60.00142 * 9 7 2 29 29 H 1.08997 * 109.47379 * 299.99901 * 9 7 2 30 30 H 0.97011 * 120.00308 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.02317 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.97874 * 180.25606 * 18 17 16 33 33 H 1.08001 * 119.97822 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.02853 * 180.02562 * 22 21 19 35 35 H 1.09001 * 109.51491 * 206.80330 * 25 23 15 36 36 H 1.09006 * 109.51241 * 86.64509 * 25 23 15 37 37 H 1.09001 * 109.45012 * 25.75826 * 26 13 11 38 38 H 1.09008 * 109.42723 * 265.82686 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0018 11 6 1.7537 -4.8834 -0.0025 12 8 0.5575 -5.1057 -0.0017 13 6 2.7070 -5.9984 -0.0032 14 7 3.9808 -5.7513 -0.0036 15 7 4.9186 -6.7890 -0.0070 16 6 6.2375 -6.5366 0.3918 17 6 6.9270 -5.4514 -0.1333 18 6 8.2252 -5.2010 0.2655 19 6 8.8434 -6.0377 1.1796 20 9 10.1156 -5.7945 1.5640 21 6 8.1595 -7.1236 1.7002 22 6 6.8594 -7.3746 1.3081 23 6 4.5613 -8.0300 -0.3914 24 8 5.3795 -8.9246 -0.3965 25 6 3.1400 -8.3022 -0.8146 26 6 2.1941 -7.4137 -0.0034 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 3.1567 -3.4354 -0.0021 31 1 6.4469 -4.8015 -0.8499 32 1 8.7604 -4.3548 -0.1395 33 1 8.6435 -7.7752 2.4126 34 1 6.3262 -8.2213 1.7145 35 1 2.9004 -9.3500 -0.6333 36 1 3.0274 -8.0806 -1.8760 37 1 1.2000 -7.4395 -0.4497 38 1 2.1413 -7.7804 1.0218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528348041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:37 Heat of formation + Delta-G solvation = -62.123662 kcal Electronic energy + Delta-G solvation = -25631.616515 eV Core-core repulsion = 21581.857690 eV Total energy + Delta-G solvation = -4049.758826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95819 -42.36301 -40.76718 -39.65107 -38.37657 -36.27937 -35.25959 -34.44618 -32.72014 -32.29400 -30.60752 -29.29954 -26.91940 -25.65073 -24.64680 -23.83159 -23.41514 -21.91611 -20.23484 -19.29894 -18.72464 -18.50565 -18.21422 -17.68905 -17.31036 -17.06506 -16.69549 -16.63460 -16.25926 -16.18058 -15.66142 -15.28308 -14.91514 -14.70725 -14.62566 -14.42229 -14.11760 -14.01521 -13.92936 -13.73636 -13.52020 -13.26428 -12.93530 -12.70820 -12.69127 -12.24453 -12.20078 -12.04928 -11.48588 -11.29895 -10.97587 -10.79545 -10.54612 -10.22756 -9.92149 -9.35075 -8.27478 -6.42689 -0.31598 -0.17236 0.12366 0.80648 1.17694 1.46202 1.47123 1.58288 2.04246 2.10127 2.36527 2.45126 2.92061 3.08420 3.16356 3.37784 3.54745 3.66674 3.74805 3.79795 4.03903 4.07535 4.14203 4.29414 4.31947 4.69682 4.71749 4.81812 4.99189 4.99396 5.01823 5.10503 5.14841 5.21665 5.26180 5.40336 5.62109 5.74106 5.84736 6.29418 6.57229 6.65344 6.77891 7.15047 7.32219 8.84194 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003684 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.633459 B = 7599.529941 C = 9953.418715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.683 5.683 11 C 0.560 3.440 12 O -0.564 6.564 13 C 0.104 3.896 14 N -0.216 5.216 15 N -0.412 5.412 16 C 0.120 3.880 17 C -0.084 4.084 18 C -0.137 4.137 19 C 0.090 3.910 20 F -0.140 7.140 21 C -0.136 4.136 22 C -0.083 4.083 23 C 0.494 3.506 24 O -0.530 6.530 25 C -0.128 4.128 26 C -0.105 4.105 27 H 0.269 0.731 28 H 0.003 0.997 29 H 0.001 0.999 30 H 0.411 0.589 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.180 -15.786 0.553 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.332 5.332 11 C 0.342 3.658 12 O -0.442 6.442 13 C -0.090 4.090 14 N -0.027 5.027 15 N -0.226 5.226 16 C 0.030 3.970 17 C -0.103 4.103 18 C -0.156 4.156 19 C 0.070 3.930 20 F -0.119 7.119 21 C -0.155 4.155 22 C -0.103 4.103 23 C 0.285 3.715 24 O -0.403 6.403 25 C -0.168 4.168 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.248 0.752 31 H 0.165 0.835 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.348 -15.714 0.538 21.286 hybrid contribution 0.126 0.539 0.029 0.554 sum 14.473 -15.175 0.567 20.978 Atomic orbital electron populations 1.70100 1.07987 1.28558 1.49838 1.25911 0.95702 1.03428 0.93876 0.85260 0.78550 0.77510 0.78567 1.19656 1.20962 1.18289 1.21576 0.94228 0.90658 1.53062 0.90212 1.18737 0.88429 0.83431 0.95302 1.46268 1.11975 1.05301 1.69692 1.17667 0.87209 0.82732 0.78162 1.90823 1.16355 1.84737 1.52262 1.24897 0.90064 0.97757 0.96281 1.74819 1.00853 1.15635 1.11418 1.46363 1.06916 1.06930 1.62403 1.17707 0.82271 0.98905 0.98110 1.21107 0.93359 0.96865 0.99017 1.21256 0.95084 1.01033 0.98244 1.17886 0.79920 0.96973 0.98214 1.91505 1.36345 1.94090 1.89933 1.21173 0.94301 0.97824 1.02242 1.20972 0.95249 0.99494 0.94612 1.22094 0.92833 0.80720 0.75895 1.90740 1.54079 1.43222 1.52236 1.21976 0.86610 1.04801 1.03399 1.21057 1.02285 0.86754 1.04333 0.92190 0.97950 0.98090 0.75236 0.83511 0.81921 0.81879 0.84511 0.83181 0.85667 0.85406 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.46 13.29 21.45 0.28 -53.18 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.98 41.11 29.54 68.60 2.03 43.14 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.56 -29.09 9.28 25.60 0.24 -28.85 16 8 H 0.08 3.83 7.60 -2.91 -0.02 3.81 16 9 C 0.26 13.48 5.43 85.63 0.46 13.95 16 10 N -0.68 -27.40 5.53 -470.83 -2.60 -30.01 16 11 C 0.56 20.26 7.77 86.45 0.67 20.93 16 12 O -0.56 -23.96 16.23 -4.25 -0.07 -24.03 16 13 C 0.10 2.75 6.78 45.03 0.31 3.05 16 14 N -0.22 -5.66 10.29 -43.50 -0.45 -6.11 16 15 N -0.41 -10.07 3.58 -303.39 -1.09 -11.16 16 16 C 0.12 2.89 5.66 38.13 0.22 3.10 16 17 C -0.08 -1.80 9.72 22.39 0.22 -1.59 16 18 C -0.14 -2.59 10.02 22.30 0.22 -2.37 16 19 C 0.09 1.77 7.30 22.39 0.16 1.93 16 20 F -0.14 -2.84 17.27 44.97 0.78 -2.07 16 21 C -0.14 -2.54 10.02 22.30 0.22 -2.31 16 22 C -0.08 -1.79 8.70 22.39 0.19 -1.60 16 23 C 0.49 11.21 7.31 87.69 0.64 11.85 16 24 O -0.53 -14.40 15.66 -2.91 -0.05 -14.44 16 25 C -0.13 -1.94 6.20 29.89 0.19 -1.75 16 26 C -0.10 -1.90 5.85 29.81 0.17 -1.72 16 27 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.41 14.71 7.61 -92.70 -0.71 14.01 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.14 2.86 7.39 -2.91 -0.02 2.84 16 35 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.13 2.24 7.54 -2.39 -0.02 2.22 16 38 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -67.68 341.53 3.63 -64.05 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.42 Total: 18.11 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 4.38 Total: 15.68 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.85 Total: -100.45 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.11 Total: -38.47 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -67.68 3.63 -64.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528348041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.929 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds