Wall clock time and date at job start Tue Mar 31 2020 13:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39648 * 120.13587 * 258.75953 * 3 2 1 5 5 C 1.38077 * 120.26159 * 180.27828 * 4 3 2 6 6 C 1.38066 * 120.54766 * 359.69521 * 5 4 3 7 7 C 1.39644 * 120.26755 * 0.04831 * 6 5 4 8 8 C 1.43196 * 120.14325 * 179.97438 * 7 6 5 9 9 N 5.92883 * 144.97020 * 78.74450 * 2 1 3 10 10 C 1.40336 * 120.13808 * 78.50124 * 3 2 1 11 11 N 1.38412 * 120.26564 * 0.02761 * 10 3 2 12 12 C 1.46904 * 110.99676 * 299.71973 * 11 10 3 13 13 C 1.50699 * 109.46960 * 179.97438 * 12 11 10 14 14 C 1.38328 * 119.96230 * 269.97850 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99651 * 13 12 11 28 28 H 1.07996 * 119.86585 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.72201 * 179.72309 * 5 4 3 30 30 H 1.08003 * 119.87013 * 180.02562 * 6 5 4 31 31 H 1.00901 * 110.99366 * 63.67139 * 11 10 3 32 32 H 1.09002 * 109.46748 * 59.99845 * 12 11 10 33 33 H 1.08992 * 109.46853 * 299.99958 * 12 11 10 34 34 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 35 35 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 36 36 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 37 37 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 38 38 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2364 1.1846 5 6 4.6498 0.2433 1.1864 6 6 5.3542 0.0116 0.0218 7 6 4.6761 -0.2318 -1.1744 8 6 5.4094 -0.4712 -2.3808 9 7 5.9909 -0.6642 -3.3377 10 6 3.2727 -0.2410 -1.1893 11 7 2.5892 -0.4806 -2.3688 12 6 1.7381 -1.6722 -2.2511 13 6 1.0110 -1.9004 -3.5513 14 6 -0.2273 -1.3210 -3.7612 15 6 -0.8979 -1.5285 -4.9526 16 6 -0.3296 -2.3101 -5.9395 17 6 0.9108 -2.8978 -5.7295 18 8 1.4691 -3.6715 -6.6952 19 6 0.7173 -3.9285 -7.7845 20 1 -0.2487 -3.4589 -7.8969 21 6 1.1844 -4.7958 -8.7603 22 7 2.3608 -5.3682 -8.6231 23 14 0.1424 -5.1525 -10.2691 24 1 -1.1289 -4.3896 -10.1843 25 1 0.8832 -4.7449 -11.4899 26 1 -0.1553 -6.6060 -10.3328 27 6 1.5815 -2.6880 -4.5314 28 1 2.7290 0.4180 2.1020 29 1 5.1831 0.4310 2.1066 30 1 6.4341 0.0191 0.0358 31 1 2.0474 0.3252 -2.6427 32 1 1.0130 -1.5231 -1.4510 33 1 2.3572 -2.5398 -2.0235 34 1 -0.6714 -0.7052 -2.9931 35 1 -1.8647 -1.0751 -5.1135 36 1 -0.8515 -2.4676 -6.8719 37 1 2.6874 -5.9752 -9.3055 38 1 2.5481 -3.1407 -4.3666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645726960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:46 Heat of formation + Delta-G solvation = 98.912782 kcal Electronic energy + Delta-G solvation = -24223.050866 eV Core-core repulsion = 20611.044329 eV Total energy + Delta-G solvation = -3612.006537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68666 -39.05955 -37.32383 -36.83566 -36.22227 -35.58942 -32.30435 -32.05218 -31.53345 -29.55307 -28.77549 -25.77667 -25.05733 -24.60564 -22.96881 -21.68046 -20.72509 -20.33215 -17.87700 -17.43286 -17.20613 -16.96142 -16.48570 -15.65844 -15.11679 -15.01970 -14.76600 -14.34882 -14.29214 -13.86221 -13.72490 -13.53530 -13.44873 -13.38392 -13.26630 -12.89625 -12.68404 -12.40743 -12.32835 -12.29289 -11.99184 -11.96178 -11.60249 -11.30743 -10.87257 -10.79081 -10.61827 -10.42491 -9.48777 -9.35875 -9.32053 -9.01980 -8.83689 -8.13966 -7.25529 -6.43436 -4.02648 0.11634 0.38173 2.03375 2.24617 2.27319 2.34512 2.71081 3.05301 3.13067 3.14508 3.20229 3.38408 3.56007 3.67838 3.71907 3.97278 4.37371 4.45274 4.56856 4.72250 4.90615 4.97890 5.04865 5.10764 5.12981 5.48030 5.56454 5.57452 5.62591 5.70964 5.75307 5.89950 6.00841 6.14705 6.33652 6.56839 6.69350 6.88345 6.98959 7.06811 7.08650 7.26212 7.34151 7.43082 7.52879 7.78610 8.00997 9.01893 9.71983 10.74531 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.002963 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.374423 B = 9446.204006 C =10761.021574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.244 3.756 3 C -0.068 4.068 4 C -0.036 4.036 5 C -0.126 4.126 6 C -0.038 4.038 7 C -0.003 4.003 8 C 0.256 3.744 9 N -0.394 5.394 10 C 0.196 3.804 11 N -0.649 5.649 12 C 0.106 3.894 13 C -0.055 4.055 14 C -0.203 4.203 15 C -0.075 4.075 16 C -0.228 4.228 17 C 0.152 3.848 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.161 4.161 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.367 0.633 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.269 0.731 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 12.050 21.509 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.071 4.071 3 C -0.075 4.075 4 C -0.057 4.057 5 C -0.144 4.144 6 C -0.059 4.059 7 C -0.007 4.007 8 C -0.060 4.060 9 N -0.068 5.068 10 C 0.093 3.907 11 N -0.282 5.282 12 C -0.020 4.020 13 C -0.055 4.055 14 C -0.223 4.223 15 C -0.093 4.093 16 C -0.247 4.247 17 C 0.098 3.902 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.181 4.181 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.193 0.807 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.601 11.139 19.526 22.767 hybrid contribution -1.201 0.222 0.028 1.222 sum 2.400 11.360 19.555 22.742 Atomic orbital electron populations 1.81356 1.11604 1.07805 1.06142 1.25390 0.92505 0.94423 0.94775 1.16770 0.85110 1.09627 0.95947 1.21318 0.94460 0.93607 0.96353 1.21008 0.93286 1.01490 0.98654 1.21419 1.00991 0.93253 0.90285 1.15861 0.89756 1.06299 0.88810 1.25084 0.93450 0.94700 0.92784 1.81311 1.09439 1.06994 1.09075 1.18694 0.91531 0.92207 0.88228 1.57685 1.34153 1.08564 1.27818 1.21067 0.93864 0.91732 0.95339 1.18959 0.94349 0.98197 0.94023 1.20416 0.96671 1.06561 0.98604 1.20684 0.98328 0.97096 0.93194 1.21207 0.97963 1.04366 1.01205 1.19328 0.91214 0.90643 0.89016 1.83988 1.40126 1.58464 1.25426 1.21368 1.01740 1.27601 0.96102 0.89054 1.25291 0.96716 0.95553 0.98958 1.70051 1.17303 1.27746 1.34466 0.85653 0.79164 0.78599 0.80036 1.19120 1.20125 1.20125 1.20009 1.01110 1.04750 0.92242 0.84281 0.83729 0.83787 0.80659 0.93522 0.89488 0.88054 0.87460 0.85539 0.92058 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.87 18.14 41.84 0.76 -4.11 16 2 C 0.24 2.41 12.25 -22.47 -0.28 2.13 16 3 C -0.07 -0.50 5.62 -106.66 -0.60 -1.10 16 4 C -0.04 -0.15 9.74 -39.11 -0.38 -0.53 16 5 C -0.13 -0.36 10.00 -39.70 -0.40 -0.75 16 6 C -0.04 -0.17 9.74 -39.12 -0.38 -0.55 16 7 C 0.00 -0.02 5.75 -106.66 -0.61 -0.64 16 8 C 0.26 3.12 14.81 -22.47 -0.33 2.79 16 9 N -0.39 -6.17 18.54 41.85 0.78 -5.39 16 10 C 0.20 1.79 5.58 -83.31 -0.46 1.32 16 11 N -0.65 -7.89 5.57 -59.09 -0.33 -8.22 16 12 C 0.11 1.47 5.38 -4.97 -0.03 1.44 16 13 C -0.05 -0.98 5.39 -104.65 -0.56 -1.54 16 14 C -0.20 -3.59 9.70 -39.53 -0.38 -3.98 16 15 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 16 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 17 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.17 9.76 0.05 0.00 -5.16 16 19 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 23 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.16 -3.50 9.65 -39.39 -0.38 -3.88 16 28 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 29 H 0.14 -0.01 8.06 -52.49 -0.42 -0.43 16 30 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 31 H 0.37 4.28 8.67 -39.29 -0.34 3.94 16 32 H 0.05 0.61 4.87 -51.93 -0.25 0.36 16 33 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -34.68 350.11 -6.66 -41.34 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.25 Total: 4.28 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -5.62 Total: -18.91 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 1.96 Total: -42.71 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.68 -6.66 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645726960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.256 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds