Wall clock time and date at job start Tue Mar 31 2020 13:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39648 * 120.13587 * 258.75953 * 3 2 1 5 5 C 1.38077 * 120.26159 * 180.27828 * 4 3 2 6 6 C 1.38066 * 120.54766 * 359.69521 * 5 4 3 7 7 C 1.39644 * 120.26755 * 0.04831 * 6 5 4 8 8 C 1.43196 * 120.14325 * 179.97438 * 7 6 5 9 9 N 5.92883 * 144.97020 * 78.74450 * 2 1 3 10 10 C 1.40336 * 120.13808 * 78.50124 * 3 2 1 11 11 N 1.38412 * 120.26564 * 0.02761 * 10 3 2 12 12 C 1.46904 * 110.99676 * 299.71973 * 11 10 3 13 13 C 1.50699 * 109.46960 * 179.97438 * 12 11 10 14 14 C 1.38328 * 119.96230 * 269.97850 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99651 * 13 12 11 28 28 H 1.07996 * 119.86585 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.72201 * 179.72309 * 5 4 3 30 30 H 1.08003 * 119.87013 * 180.02562 * 6 5 4 31 31 H 1.00901 * 110.99366 * 63.67139 * 11 10 3 32 32 H 1.09002 * 109.46748 * 59.99845 * 12 11 10 33 33 H 1.08992 * 109.46853 * 299.99958 * 12 11 10 34 34 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 35 35 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 36 36 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 37 37 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 38 38 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2364 1.1846 5 6 4.6498 0.2433 1.1864 6 6 5.3542 0.0116 0.0218 7 6 4.6761 -0.2318 -1.1744 8 6 5.4094 -0.4712 -2.3808 9 7 5.9909 -0.6642 -3.3377 10 6 3.2727 -0.2410 -1.1893 11 7 2.5892 -0.4806 -2.3688 12 6 1.7381 -1.6722 -2.2511 13 6 1.0110 -1.9004 -3.5513 14 6 -0.2273 -1.3210 -3.7612 15 6 -0.8979 -1.5285 -4.9526 16 6 -0.3296 -2.3101 -5.9395 17 6 0.9108 -2.8978 -5.7295 18 8 1.4691 -3.6715 -6.6952 19 6 0.7173 -3.9285 -7.7845 20 1 -0.2487 -3.4589 -7.8969 21 6 1.1844 -4.7958 -8.7603 22 7 2.3608 -5.3682 -8.6231 23 14 0.1424 -5.1525 -10.2691 24 1 -1.1289 -4.3896 -10.1843 25 1 0.8832 -4.7449 -11.4899 26 1 -0.1553 -6.6060 -10.3328 27 6 1.5815 -2.6880 -4.5314 28 1 2.7290 0.4180 2.1020 29 1 5.1831 0.4310 2.1066 30 1 6.4341 0.0191 0.0358 31 1 2.0474 0.3252 -2.6427 32 1 1.0130 -1.5231 -1.4510 33 1 2.3572 -2.5398 -2.0235 34 1 -0.6714 -0.7052 -2.9931 35 1 -1.8647 -1.0751 -5.1135 36 1 -0.8515 -2.4676 -6.8719 37 1 2.6874 -5.9752 -9.3055 38 1 2.5481 -3.1407 -4.3666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645726960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:45 Heat of formation + Delta-G solvation = 76.477863 kcal Electronic energy + Delta-G solvation = -24224.023717 eV Core-core repulsion = 20611.044329 eV Total energy + Delta-G solvation = -3612.979388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41635 -40.75041 -38.67465 -37.90703 -37.14759 -36.67610 -34.34363 -32.79173 -32.63235 -31.00555 -30.00444 -27.53144 -26.49236 -25.21867 -23.74763 -23.34917 -22.40236 -20.91528 -19.64799 -18.89524 -18.21484 -17.87664 -17.17777 -16.85986 -16.53622 -16.41265 -16.09286 -15.66180 -15.45228 -15.26629 -14.90473 -14.70075 -14.57704 -14.46307 -14.23857 -14.05094 -13.93443 -13.71248 -13.60299 -13.32322 -13.07944 -12.90060 -12.71498 -12.66154 -12.52680 -12.35479 -12.27390 -12.11495 -11.25415 -10.86100 -10.07995 -10.02216 -9.81285 -9.70058 -9.08078 -8.50408 -6.19632 -0.36518 -0.21825 0.42026 0.64859 1.31887 1.40662 1.49448 1.50863 1.69915 1.80931 2.14412 2.27013 2.61759 2.72140 2.88696 2.93449 3.02447 3.16815 3.36876 3.73787 3.95470 3.99104 4.10501 4.16359 4.25332 4.29486 4.37861 4.46607 4.52431 4.62792 4.66314 4.96417 5.07489 5.12168 5.19925 5.24904 5.32355 5.54841 5.59873 5.64456 5.65612 5.78732 5.98128 6.11714 6.17377 6.36515 6.62703 6.93682 7.74168 8.73150 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.002963 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.374423 B = 9446.204006 C =10761.021574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.265 3.735 3 C -0.077 4.077 4 C -0.014 4.014 5 C -0.102 4.102 6 C -0.018 4.018 7 C -0.026 4.026 8 C 0.284 3.716 9 N -0.473 5.473 10 C 0.180 3.820 11 N -0.663 5.663 12 C 0.116 3.884 13 C -0.042 4.042 14 C -0.181 4.181 15 C -0.069 4.069 16 C -0.238 4.238 17 C 0.114 3.886 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.021 2.979 24 H -0.250 1.250 25 H -0.268 1.268 26 H -0.267 1.267 27 C -0.178 4.178 28 H 0.170 0.830 29 H 0.191 0.809 30 H 0.170 0.830 31 H 0.367 0.633 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.273 0.727 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 14.277 25.386 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.049 4.049 3 C -0.083 4.083 4 C -0.035 4.035 5 C -0.120 4.120 6 C -0.039 4.039 7 C -0.030 4.030 8 C -0.031 4.031 9 N -0.149 5.149 10 C 0.078 3.922 11 N -0.297 5.297 12 C -0.010 4.010 13 C -0.043 4.043 14 C -0.200 4.200 15 C -0.087 4.087 16 C -0.258 4.258 17 C 0.064 3.936 18 O -0.139 6.139 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.192 1.192 27 C -0.198 4.198 28 H 0.188 0.812 29 H 0.208 0.792 30 H 0.187 0.813 31 H 0.193 0.807 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.587 13.410 23.463 27.148 hybrid contribution -0.871 -0.228 -0.724 1.155 sum 1.716 13.182 22.739 26.340 Atomic orbital electron populations 1.81374 1.13001 1.09797 1.07688 1.25722 0.92846 0.92983 0.93362 1.16725 0.83837 1.11268 0.96471 1.21753 0.95166 0.90672 0.95932 1.21506 0.92638 0.98464 0.99348 1.21787 1.02362 0.90696 0.89052 1.16019 0.89275 1.09063 0.88685 1.25784 0.92057 0.92512 0.92729 1.81331 1.12012 1.10189 1.11357 1.18593 0.91546 0.94311 0.87723 1.57489 1.33827 1.07929 1.30430 1.20926 0.94192 0.92916 0.93013 1.19381 0.94528 0.95804 0.94539 1.20849 0.95782 1.04792 0.98592 1.21097 0.99610 0.95635 0.92350 1.21308 0.97226 1.05125 1.02122 1.19878 0.92937 0.91365 0.89449 1.83954 1.41932 1.61168 1.26894 1.21880 1.02354 1.28239 0.96578 0.88029 1.26642 0.98127 0.94947 1.02422 1.70202 1.19824 1.29586 1.36294 0.84508 0.77632 0.78810 0.75084 1.17369 1.19321 1.19159 1.20148 1.00892 1.06096 0.92631 0.81244 0.79223 0.81284 0.80693 0.92065 0.89634 0.84829 0.83649 0.86136 0.91808 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.92 18.14 19.00 0.34 -9.57 16 2 C 0.27 4.48 12.25 88.33 1.08 5.57 16 3 C -0.08 -0.87 5.62 -21.18 -0.12 -0.99 16 4 C -0.01 -0.04 9.74 22.57 0.22 0.18 16 5 C -0.10 0.08 10.00 22.19 0.22 0.30 16 6 C -0.02 -0.08 9.74 22.57 0.22 0.14 16 7 C -0.03 -0.38 5.75 -21.18 -0.12 -0.50 16 8 C 0.28 7.01 14.81 88.33 1.31 8.32 16 9 N -0.47 -15.71 18.54 19.01 0.35 -15.36 16 10 C 0.18 2.94 5.58 39.13 0.22 3.16 16 11 N -0.66 -15.70 5.57 -340.85 -1.90 -17.60 16 12 C 0.12 3.12 5.38 85.56 0.46 3.58 16 13 C -0.04 -1.49 5.39 -19.88 -0.11 -1.60 16 14 C -0.18 -6.03 9.70 22.30 0.22 -5.81 16 15 C -0.07 -2.49 10.04 22.25 0.22 -2.27 16 16 C -0.24 -10.86 9.17 22.39 0.21 -10.65 16 17 C 0.11 6.00 6.65 22.58 0.15 6.15 16 18 O -0.23 -14.71 9.76 -22.74 -0.22 -14.93 16 19 C -0.41 -25.07 9.49 67.92 0.64 -24.42 16 20 H 0.10 5.64 5.21 -2.91 -0.02 5.62 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 22 N -0.92 -58.58 13.67 21.61 0.30 -58.28 16 23 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 24 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 C -0.18 -8.14 9.65 22.39 0.22 -7.93 16 28 H 0.17 -0.43 8.06 -2.91 -0.02 -0.45 16 29 H 0.19 -1.61 8.06 -2.91 -0.02 -1.64 16 30 H 0.17 -0.01 8.06 -2.91 -0.02 -0.04 16 31 H 0.37 8.25 8.67 -89.69 -0.78 7.47 16 32 H 0.06 1.48 4.87 -2.39 -0.01 1.47 16 33 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 34 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.12 5.54 5.64 -2.91 -0.02 5.53 16 37 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -86.01 350.11 6.77 -79.24 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.37 Total: 17.89 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 5.50 Total: -27.73 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -0.90 Total: -100.81 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.22 Total: -14.93 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -86.01 6.77 -79.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645726960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.715 kcal (2) G-P(sol) polarization free energy of solvation -86.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds