Wall clock time and date at job start Tue Mar 31 2020 12:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46795 * 2 1 4 4 C 1.53000 * 109.47257 * 239.99904 * 2 1 3 5 5 N 1.46498 * 109.47324 * 184.99663 * 4 2 1 6 6 C 1.46490 * 120.00157 * 270.00439 * 5 4 2 7 7 C 1.34774 * 119.99699 * 89.99830 * 5 4 2 8 8 O 1.21686 * 120.00085 * 5.30131 * 7 5 4 9 9 C 1.46685 * 119.99897 * 185.30018 * 7 5 4 10 10 S 1.76213 * 126.13171 * 94.97005 * 9 7 5 11 11 C 1.70953 * 90.31353 * 179.97438 * 10 9 7 12 12 N 1.29430 * 110.39153 * 359.97438 * 11 10 9 13 13 C 1.30938 * 117.36339 * 0.02562 * 12 11 10 14 14 C 1.50708 * 122.90391 * 180.26918 * 13 12 11 15 15 F 1.39898 * 109.46972 * 24.48218 * 14 13 12 16 16 F 1.39894 * 109.47179 * 144.48524 * 14 13 12 17 17 N 1.46497 * 109.47161 * 119.99981 * 2 1 3 18 18 C 1.36939 * 119.99869 * 275.00274 * 17 2 1 19 19 H 1.08003 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.38815 * 120.00024 * 179.97438 * 18 17 2 21 21 N 1.31621 * 119.99904 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99932 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.46925 * 89.99794 * 22 20 18 24 24 H 1.48498 * 109.46824 * 209.99951 * 22 20 18 25 25 H 1.48498 * 109.47089 * 330.00089 * 22 20 18 26 26 H 1.08995 * 109.47107 * 299.99605 * 1 2 3 27 27 H 1.08996 * 109.47061 * 60.00247 * 1 2 3 28 28 H 1.09000 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47162 * 64.99743 * 4 2 1 30 30 H 1.09004 * 109.46978 * 305.00380 * 4 2 1 31 31 H 1.09004 * 109.46973 * 264.91779 * 6 5 4 32 32 H 1.08996 * 109.47407 * 24.91479 * 6 5 4 33 33 H 1.09004 * 109.47683 * 144.91699 * 6 5 4 34 34 H 1.07996 * 124.80306 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.46941 * 264.48523 * 14 13 12 36 36 H 0.96996 * 120.00104 * 94.99768 * 17 2 1 37 37 H 0.97002 * 119.99912 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2341 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3870 -2.8239 -0.2241 9 6 5.5326 -1.9501 -0.4484 10 16 6.4346 -1.4766 0.9894 11 6 7.9027 -1.8846 0.2143 12 7 7.6746 -2.3204 -0.9829 13 6 6.4271 -2.3720 -1.3772 14 6 6.0195 -2.8636 -2.7423 15 9 7.0049 -3.7217 -3.2422 16 9 4.8058 -3.5528 -2.6465 17 7 2.0184 -0.6906 1.1961 18 6 2.1491 -0.0074 2.3757 19 1 1.8926 1.0406 2.4241 20 6 2.6113 -0.6619 3.5093 21 7 2.7374 -0.0051 4.6429 22 14 3.0557 -2.4744 3.4254 23 1 4.4885 -2.6164 3.0622 24 1 2.8155 -3.1046 4.7484 25 1 2.2162 -3.1429 2.3990 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2951 31 1 4.6172 -0.0343 -2.7791 32 1 3.7746 1.1693 -1.7744 33 1 5.2318 0.3564 -1.1549 34 1 8.8818 -1.7919 0.6604 35 1 5.9027 -2.0137 -3.4146 36 1 2.2490 -1.6317 1.1526 37 1 3.0608 -0.4624 5.4350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755595201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:28 Heat of formation + Delta-G solvation = -59.430601 kcal Electronic energy + Delta-G solvation = -26098.522426 eV Core-core repulsion = 22060.864027 eV Total energy + Delta-G solvation = -4037.658400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.091 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.11215 -47.12279 -40.40593 -39.24025 -36.29126 -34.68929 -32.20601 -31.43880 -29.42252 -28.03636 -27.26191 -25.51393 -24.88190 -23.38886 -21.45872 -19.98695 -19.55519 -18.55661 -17.86979 -17.68243 -17.41339 -16.59071 -16.24593 -16.02773 -15.35991 -14.94635 -14.53592 -14.44831 -13.92956 -13.78878 -13.52155 -13.42867 -13.16446 -13.01258 -12.95686 -12.56262 -12.45819 -12.24027 -12.07216 -11.65115 -11.52248 -11.23894 -10.93227 -10.70951 -10.60589 -10.21339 -9.97698 -9.83138 -9.56810 -9.50297 -9.25547 -8.89919 -8.47406 -7.24201 -5.76804 -3.10681 0.22277 0.89419 1.47310 2.24907 2.78572 3.07552 3.33137 3.40133 3.50216 3.62492 3.82724 4.23447 4.43933 4.62279 4.63240 4.74087 5.06342 5.14512 5.15851 5.24165 5.49033 5.54761 5.55464 5.62341 5.76221 5.83976 6.10067 6.17366 6.38977 6.56514 6.71103 6.97113 7.26834 7.37477 8.01117 8.19611 8.42962 9.25349 9.98233 10.19341 11.41049 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.006474 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.534931 B = 4324.142214 C = 5368.518337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 H 0.055 0.945 4 C 0.106 3.894 5 N -0.593 5.593 6 C 0.080 3.920 7 C 0.599 3.401 8 O -0.504 6.504 9 C -0.238 4.238 10 S 0.279 5.721 11 C -0.007 4.007 12 N -0.448 5.448 13 C 0.013 3.987 14 C 0.350 3.650 15 F -0.186 7.186 16 F -0.184 7.184 17 N -0.749 5.749 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.009 3.991 21 N -0.934 5.934 22 Si 0.861 3.139 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.267 1.267 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.210 0.790 35 H 0.128 0.872 36 H 0.372 0.628 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 0.671 -15.967 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.073 0.927 4 C -0.017 4.017 5 N -0.325 5.325 6 C -0.064 4.064 7 C 0.382 3.618 8 O -0.378 6.378 9 C -0.365 4.365 10 S 0.536 5.464 11 C -0.302 4.302 12 N -0.161 5.161 13 C -0.126 4.126 14 C 0.293 3.707 15 F -0.167 7.167 16 F -0.165 7.165 17 N -0.395 5.395 18 C -0.370 4.370 19 H 0.106 0.894 20 C -0.186 4.186 21 N -0.582 5.582 22 Si 0.691 3.309 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.193 1.193 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.226 0.774 35 H 0.145 0.855 36 H 0.208 0.792 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.278 0.553 -14.863 17.022 hybrid contribution 0.233 -1.636 -0.507 1.728 sum 8.511 -1.083 -15.370 17.602 Atomic orbital electron populations 1.22363 0.98212 1.01203 1.00657 1.20633 0.92429 0.95894 0.86204 0.92653 1.22053 0.77817 1.02845 0.98995 1.47458 1.07366 1.20087 1.57630 1.21784 0.95826 0.91254 0.97531 1.16551 0.84218 0.82804 0.78188 1.90854 1.62599 1.36211 1.48180 1.25661 1.00235 1.10940 0.99641 1.85180 0.95983 1.53614 1.11585 1.28770 1.05131 1.02829 0.93464 1.65777 1.19345 1.15937 1.15058 1.20856 0.88153 1.05773 0.97844 1.19643 0.73025 0.87767 0.90219 1.93024 1.62422 1.73146 1.88098 1.93103 1.44623 1.81889 1.96860 1.43027 1.79482 1.10246 1.06760 1.19054 1.36659 0.95355 0.85885 0.89367 1.24572 1.01570 0.96960 0.95538 1.69701 1.52857 1.35423 1.00190 0.86879 0.79521 0.87567 0.76938 1.20347 1.21919 1.19283 0.92017 0.94092 0.93351 0.89927 0.89658 0.92941 0.89867 0.91699 0.77351 0.85531 0.79188 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.16 2.92 3.20 -67.93 -0.22 2.71 16 3 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 4 C 0.11 1.59 5.13 -4.04 -0.02 1.57 16 5 N -0.59 -9.09 2.77 -183.13 -0.51 -9.60 16 6 C 0.08 0.87 10.23 59.84 0.61 1.48 16 7 C 0.60 11.04 4.91 -12.85 -0.06 10.98 16 8 O -0.50 -11.30 14.64 5.20 0.08 -11.22 16 9 C -0.24 -3.92 4.33 -37.09 -0.16 -4.08 16 10 S 0.28 4.27 23.21 -107.50 -2.50 1.77 16 11 C -0.01 -0.08 12.22 51.75 0.63 0.55 16 12 N -0.45 -6.25 10.25 -11.53 -0.12 -6.37 16 13 C 0.01 0.20 6.53 -83.89 -0.55 -0.35 16 14 C 0.35 4.51 5.63 36.01 0.20 4.71 16 15 F -0.19 -2.58 17.13 2.25 0.04 -2.54 16 16 F -0.18 -2.84 15.56 2.25 0.04 -2.81 16 17 N -0.75 -17.87 4.33 -53.42 -0.23 -18.10 16 18 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 19 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 20 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 22 Si 0.86 23.04 27.74 -169.99 -4.71 18.33 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.93 7.11 56.52 0.40 -7.52 16 25 H -0.27 -7.34 6.52 56.52 0.37 -6.97 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.09 1.42 7.35 -51.93 -0.38 1.04 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.77 8.03 -51.93 -0.42 0.36 16 33 H 0.06 0.73 6.99 -51.93 -0.36 0.37 16 34 H 0.21 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.37 9.37 3.11 -40.82 -0.13 9.24 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -35.77 334.69 -5.82 -41.59 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.26 Total: 3.61 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.54 Total: 8.53 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.08 Total: -62.30 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.33 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -2.50 Total: 1.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.77 -5.82 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755595201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.845 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds