Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46795 * 2 1 4 4 C 1.53000 * 109.47257 * 239.99904 * 2 1 3 5 5 N 1.46498 * 109.47324 * 184.99663 * 4 2 1 6 6 C 1.46490 * 120.00157 * 270.00439 * 5 4 2 7 7 C 1.34774 * 119.99699 * 89.99830 * 5 4 2 8 8 O 1.21686 * 120.00085 * 5.30131 * 7 5 4 9 9 C 1.46685 * 119.99897 * 185.30018 * 7 5 4 10 10 S 1.76213 * 126.13171 * 94.97005 * 9 7 5 11 11 C 1.70953 * 90.31353 * 179.97438 * 10 9 7 12 12 N 1.29430 * 110.39153 * 359.97438 * 11 10 9 13 13 C 1.30938 * 117.36339 * 0.02562 * 12 11 10 14 14 C 1.50708 * 122.90391 * 180.26918 * 13 12 11 15 15 F 1.39898 * 109.46972 * 24.48218 * 14 13 12 16 16 F 1.39894 * 109.47179 * 144.48524 * 14 13 12 17 17 N 1.46497 * 109.47161 * 119.99981 * 2 1 3 18 18 C 1.36939 * 119.99869 * 275.00274 * 17 2 1 19 19 H 1.08003 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.38815 * 120.00024 * 179.97438 * 18 17 2 21 21 N 1.31621 * 119.99904 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99932 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.46925 * 89.99794 * 22 20 18 24 24 H 1.48498 * 109.46824 * 209.99951 * 22 20 18 25 25 H 1.48498 * 109.47089 * 330.00089 * 22 20 18 26 26 H 1.08995 * 109.47107 * 299.99605 * 1 2 3 27 27 H 1.08996 * 109.47061 * 60.00247 * 1 2 3 28 28 H 1.09000 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47162 * 64.99743 * 4 2 1 30 30 H 1.09004 * 109.46978 * 305.00380 * 4 2 1 31 31 H 1.09004 * 109.46973 * 264.91779 * 6 5 4 32 32 H 1.08996 * 109.47407 * 24.91479 * 6 5 4 33 33 H 1.09004 * 109.47683 * 144.91699 * 6 5 4 34 34 H 1.07996 * 124.80306 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.46941 * 264.48523 * 14 13 12 36 36 H 0.96996 * 120.00104 * 94.99768 * 17 2 1 37 37 H 0.97002 * 119.99912 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2341 -1.7612 7 6 4.0758 -1.8986 -0.6115 8 8 3.3870 -2.8239 -0.2241 9 6 5.5326 -1.9501 -0.4484 10 16 6.4346 -1.4766 0.9894 11 6 7.9027 -1.8846 0.2143 12 7 7.6746 -2.3204 -0.9829 13 6 6.4271 -2.3720 -1.3772 14 6 6.0195 -2.8636 -2.7423 15 9 7.0049 -3.7217 -3.2422 16 9 4.8058 -3.5528 -2.6465 17 7 2.0184 -0.6906 1.1961 18 6 2.1491 -0.0074 2.3757 19 1 1.8926 1.0406 2.4241 20 6 2.6113 -0.6619 3.5093 21 7 2.7374 -0.0051 4.6429 22 14 3.0557 -2.4744 3.4254 23 1 4.4885 -2.6164 3.0622 24 1 2.8155 -3.1046 4.7484 25 1 2.2162 -3.1429 2.3990 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2951 31 1 4.6172 -0.0343 -2.7791 32 1 3.7746 1.1693 -1.7744 33 1 5.2318 0.3564 -1.1549 34 1 8.8818 -1.7919 0.6604 35 1 5.9027 -2.0137 -3.4146 36 1 2.2490 -1.6317 1.1526 37 1 3.0608 -0.4624 5.4350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755595201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = -85.224977 kcal Electronic energy + Delta-G solvation = -26099.640954 eV Core-core repulsion = 22060.864027 eV Total energy + Delta-G solvation = -4038.776928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16109 -48.18328 -41.58267 -40.44298 -37.80203 -36.18094 -34.10334 -32.67576 -31.22428 -29.17485 -28.28934 -26.67595 -25.92309 -25.37861 -22.73383 -21.44828 -20.68312 -19.97146 -19.43495 -18.88366 -18.52312 -17.76490 -17.49105 -17.17174 -16.72185 -16.56074 -16.01846 -15.57043 -15.30705 -14.99592 -14.83991 -14.62828 -14.54238 -14.44679 -14.17008 -14.10775 -13.74440 -13.45575 -13.26320 -13.14060 -12.97658 -12.80481 -12.40317 -12.30374 -12.22565 -11.85064 -11.79783 -11.48715 -11.07695 -10.94147 -10.64514 -10.34335 -9.71487 -9.27217 -8.04641 -5.32131 -0.86153 -0.24452 0.40655 1.19696 1.26074 1.30834 1.44854 1.53376 1.93800 2.33195 2.42664 2.90902 3.20504 3.27857 3.34998 3.65249 3.70239 3.85223 4.06043 4.10382 4.19957 4.37941 4.55095 4.59395 4.63305 4.67859 4.84231 4.87229 5.02413 5.23481 5.38329 5.60452 5.79874 6.15448 6.21558 6.22906 6.92573 7.10853 7.91632 8.07701 9.17016 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.006474 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.534931 B = 4324.142214 C = 5368.518337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.111 3.889 5 N -0.590 5.590 6 C 0.069 3.931 7 C 0.593 3.407 8 O -0.558 6.558 9 C -0.262 4.262 10 S 0.216 5.784 11 C 0.040 3.960 12 N -0.463 5.463 13 C 0.025 3.975 14 C 0.343 3.657 15 F -0.192 7.192 16 F -0.201 7.201 17 N -0.757 5.757 18 C -0.210 4.210 19 H 0.068 0.932 20 C -0.044 4.044 21 N -0.975 5.975 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.300 1.300 25 H -0.281 1.281 26 H 0.034 0.966 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.137 0.863 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.256 0.744 35 H 0.178 0.822 36 H 0.367 0.633 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 1.323 -18.894 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.012 4.012 5 N -0.321 5.321 6 C -0.073 4.073 7 C 0.378 3.622 8 O -0.437 6.437 9 C -0.388 4.388 10 S 0.473 5.527 11 C -0.256 4.256 12 N -0.175 5.175 13 C -0.114 4.114 14 C 0.287 3.713 15 F -0.173 7.173 16 F -0.182 7.182 17 N -0.403 5.403 18 C -0.341 4.341 19 H 0.086 0.914 20 C -0.236 4.236 21 N -0.627 5.627 22 Si 0.739 3.261 23 H -0.186 1.186 24 H -0.227 1.227 25 H -0.207 1.207 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.272 0.728 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.521 1.246 -17.875 20.291 hybrid contribution -0.111 -1.748 0.273 1.773 sum 9.410 -0.502 -17.602 19.966 Atomic orbital electron populations 1.22228 0.96727 1.00985 1.01632 1.21012 0.93450 0.96027 0.85613 0.92166 1.22062 0.77816 1.02266 0.99059 1.47644 1.07860 1.20090 1.56456 1.22137 0.95319 0.90802 0.99000 1.16894 0.84853 0.82811 0.77644 1.90811 1.63953 1.38318 1.50664 1.25433 0.99555 1.13546 1.00255 1.85364 0.98734 1.55549 1.13075 1.29494 1.05115 0.99005 0.91951 1.65885 1.18834 1.17082 1.15747 1.21173 0.88021 1.04046 0.98206 1.20230 0.72033 0.88694 0.90320 1.93008 1.62684 1.73622 1.88026 1.93074 1.45724 1.82470 1.96934 1.43192 1.79726 1.10116 1.07276 1.19065 1.33502 0.94447 0.87125 0.91411 1.25023 1.03299 0.99587 0.95677 1.69807 1.55453 1.36593 1.00824 0.86116 0.80096 0.84234 0.75687 1.18596 1.22739 1.20749 0.94660 0.89454 0.94167 0.84558 0.91367 0.89284 0.87939 0.92314 0.72848 0.80554 0.79774 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 9.49 71.98 0.68 -4.26 16 2 C 0.15 5.19 3.20 44.99 0.14 5.33 16 3 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 4 C 0.11 3.04 5.13 86.38 0.44 3.48 16 5 N -0.59 -16.74 2.77 -851.52 -2.36 -19.10 16 6 C 0.07 1.26 10.23 127.77 1.31 2.56 16 7 C 0.59 21.35 4.91 86.45 0.42 21.78 16 8 O -0.56 -25.29 14.64 -4.30 -0.06 -25.35 16 9 C -0.26 -8.31 4.33 23.88 0.10 -8.20 16 10 S 0.22 6.40 23.21 -56.49 -1.31 5.09 16 11 C 0.04 0.83 12.22 130.60 1.60 2.43 16 12 N -0.46 -11.59 10.25 -190.40 -1.95 -13.54 16 13 C 0.03 0.68 6.53 42.10 0.27 0.95 16 14 C 0.34 7.91 5.63 71.24 0.40 8.31 16 15 F -0.19 -4.87 17.13 44.97 0.77 -4.10 16 16 F -0.20 -5.92 15.56 44.97 0.70 -5.22 16 17 N -0.76 -36.17 4.33 -322.93 -1.40 -37.57 16 18 C -0.21 -11.86 10.41 84.03 0.87 -10.99 16 19 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 20 C -0.04 -2.63 5.50 84.86 0.47 -2.16 16 21 N -0.98 -62.26 13.97 21.65 0.30 -61.95 16 22 Si 0.91 49.14 27.74 68.60 1.90 51.04 16 23 H -0.26 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 25 H -0.28 -15.70 6.52 99.48 0.65 -15.06 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.14 2.29 8.07 -2.38 -0.02 2.27 16 30 H 0.07 2.17 7.35 -2.38 -0.02 2.15 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 33 H 0.06 1.17 6.99 -2.39 -0.02 1.16 16 34 H 0.26 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.18 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.37 18.65 3.11 -92.71 -0.29 18.36 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -81.87 334.69 4.08 -77.79 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.77 Total: 13.69 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.72 Total: 19.22 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -5.41 Total: -132.16 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 1.47 Total: -9.32 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 1.90 Total: 51.04 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.31 Total: 5.09 kcal Total: -81.87 4.08 -77.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755595201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.434 kcal (2) G-P(sol) polarization free energy of solvation -81.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds