Wall clock time and date at job start Tue Mar 31 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38907 * 120.33069 * 2 1 4 4 C 1.38272 * 118.50975 * 180.02562 * 3 2 1 5 5 C 1.39204 * 119.09650 * 359.97438 * 4 3 2 6 6 S 1.76196 * 119.71298 * 180.02562 * 5 4 3 7 7 C 1.81393 * 103.00181 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47373 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99530 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99664 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99548 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46859 * 89.99843 * 11 10 8 13 13 H 1.07995 * 120.00375 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00420 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00000 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47164 * 89.99981 * 16 14 12 18 18 H 1.48505 * 109.47518 * 210.00102 * 16 14 12 19 19 H 1.48502 * 109.47050 * 329.99832 * 16 14 12 20 20 C 1.46498 * 120.00395 * 0.02562 * 10 8 7 21 21 C 1.52993 * 109.47126 * 90.00142 * 20 10 8 22 22 C 1.47201 * 109.47408 * 180.02562 * 21 20 10 23 23 N 8.14447 * 118.68473 * 191.66834 * 2 1 3 24 24 N 1.32459 * 120.57265 * 0.02562 * 5 4 3 25 25 C 1.31964 * 121.61770 * 359.97438 * 24 5 4 26 26 H 1.08994 * 109.47136 * 269.98133 * 1 2 3 27 27 H 1.08998 * 109.46561 * 29.97730 * 1 2 3 28 28 H 1.09000 * 109.46828 * 149.97778 * 1 2 3 29 29 H 1.07992 * 120.74727 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.45193 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47041 * 300.00066 * 7 6 5 32 32 H 1.09007 * 109.46962 * 59.99574 * 7 6 5 33 33 H 1.08999 * 109.46863 * 209.99930 * 11 10 8 34 34 H 1.09006 * 109.46811 * 329.99945 * 11 10 8 35 35 H 0.97004 * 120.00685 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46800 * 210.00109 * 20 10 8 37 37 H 1.08992 * 109.47148 * 329.99755 * 20 10 8 38 38 H 1.09000 * 109.47254 * 299.99689 * 21 20 10 39 39 H 1.08997 * 109.47860 * 59.99625 * 21 20 10 40 40 H 1.07997 * 119.56500 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1989 0.0000 4 6 3.5905 1.1550 -0.0005 5 6 4.2285 -0.0823 -0.0005 6 16 5.9888 -0.1572 -0.0005 7 6 6.3214 -1.9404 -0.0013 8 6 7.8102 -2.1738 -0.0020 9 8 8.5719 -1.2300 -0.0015 10 7 8.2951 -3.4313 -0.0021 11 6 9.7425 -3.6581 -0.0022 12 6 10.2389 -3.7360 1.4185 13 1 9.5457 -3.6269 2.2394 14 6 11.5780 -3.9464 1.6704 15 7 12.0111 -4.0149 2.9102 16 14 12.7771 -4.1343 0.2505 17 1 13.3122 -2.8010 -0.1253 18 1 13.8968 -5.0190 0.6618 19 1 12.0758 -4.7325 -0.9139 20 6 7.3750 -4.5712 -0.0021 21 6 7.0546 -4.9680 -1.4446 22 6 6.1296 -6.1131 -1.4446 23 7 5.4163 -6.9973 -1.4450 24 7 3.5236 -1.2037 -0.0005 25 6 2.2040 -1.1914 0.0000 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3632 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6862 2.1442 0.0004 30 1 4.1672 2.0682 -0.0010 31 1 5.8828 -2.3921 0.8885 32 1 5.8828 -2.3914 -0.8915 33 1 9.9636 -4.5936 -0.5162 34 1 10.2392 -2.8351 -0.5161 35 1 12.9533 -4.1626 3.0874 36 1 7.8394 -5.4129 0.5116 37 1 6.4544 -4.2951 0.5118 38 1 6.5902 -4.1263 -1.9583 39 1 7.9752 -5.2442 -1.9586 40 1 1.6624 -2.1258 0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042173175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:05 Heat of formation + Delta-G solvation = 26.178301 kcal Electronic energy + Delta-G solvation = -23101.233539 eV Core-core repulsion = 19621.516950 eV Total energy + Delta-G solvation = -3479.716589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23114 -39.42660 -36.94207 -35.42406 -33.87339 -32.89167 -32.16368 -31.09782 -30.25310 -27.75629 -27.34380 -24.13551 -23.87657 -22.70010 -22.29429 -18.98649 -18.08449 -17.69090 -16.88499 -16.76442 -16.74753 -15.83168 -15.40868 -15.24928 -14.92244 -14.69760 -14.62148 -14.09411 -13.84390 -13.50338 -13.39927 -13.22339 -13.01837 -12.84379 -12.65889 -12.54631 -12.49799 -12.28358 -11.90061 -11.78667 -11.62591 -11.10400 -10.94440 -10.60469 -10.41046 -10.24514 -10.06419 -9.78019 -9.75574 -9.63618 -9.33920 -8.64556 -8.02356 -7.51181 -6.13827 -4.14117 0.76821 1.03389 1.33562 2.21282 2.66122 2.76110 3.04860 3.25210 3.30307 3.33275 3.45654 3.50501 4.06589 4.31525 4.34232 4.51640 4.66203 4.71788 4.77985 4.92895 4.93725 4.98503 5.11524 5.19354 5.22631 5.24283 5.37797 5.43177 5.51953 5.58492 5.70394 5.73099 5.98254 5.98636 6.37713 6.50883 6.80211 7.08561 7.51078 7.52514 7.56444 7.92317 8.37235 8.65318 8.89785 9.44946 10.99330 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.003274 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.748225 B = 8550.500974 C = 9926.757562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.154 4.154 3 C -0.060 4.060 4 C -0.148 4.148 5 C 0.101 3.899 6 S 0.009 5.991 7 C -0.137 4.137 8 C 0.526 3.474 9 O -0.516 6.516 10 N -0.585 5.585 11 C 0.215 3.785 12 C -0.534 4.534 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.115 3.885 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.441 5.441 24 N -0.490 5.490 25 C 0.115 3.885 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 7.084 -8.750 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.175 4.175 5 C -0.147 4.147 6 S 0.251 5.749 7 C -0.289 4.289 8 C 0.311 3.689 9 O -0.392 6.392 10 N -0.316 5.316 11 C 0.095 3.905 12 C -0.572 4.572 13 H 0.094 0.906 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.012 4.012 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.118 5.118 24 N -0.202 5.202 25 C -0.046 4.046 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.553 6.258 -8.634 22.272 hybrid contribution -0.460 -0.154 -0.512 0.705 sum -20.013 6.104 -9.145 22.834 Atomic orbital electron populations 1.20681 0.90215 1.02990 1.02499 1.20833 0.97533 0.94142 1.03450 1.21371 0.93433 0.98224 0.95677 1.21628 0.94950 0.97753 1.03133 1.23661 1.00553 0.91681 0.98818 1.86320 0.91835 1.06623 1.90155 1.23771 0.98899 0.97994 1.08191 1.19478 0.88013 0.83795 0.77654 1.90739 1.58839 1.40810 1.48810 1.47778 1.08556 1.03554 1.71753 1.19788 0.74850 0.97050 0.98771 1.21285 0.94372 1.50408 0.91129 0.90580 1.24850 0.98008 0.94469 0.95553 1.69887 1.15476 1.49164 1.18711 0.86876 0.81360 0.78728 0.82855 1.19837 1.21086 1.18953 1.21394 0.94834 0.91645 0.93281 1.19870 0.96736 0.91210 1.01378 1.29003 0.93699 0.94236 0.93257 1.81216 1.10847 1.11328 1.08440 1.68153 1.08577 1.28858 1.14661 1.22622 0.89574 0.97640 0.94727 0.91024 0.91437 0.91281 0.84549 0.84234 0.86385 0.86731 0.94698 0.94066 0.92454 0.88206 0.90086 0.87527 0.86553 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.03 36.01 0.36 -0.20 16 2 C -0.15 -1.28 5.90 -104.45 -0.62 -1.90 16 3 C -0.06 -0.50 9.85 -39.32 -0.39 -0.89 16 4 C -0.15 -1.53 9.84 -39.21 -0.39 -1.92 16 5 C 0.10 1.27 7.00 -16.92 -0.12 1.16 16 6 S 0.01 0.13 21.05 -107.50 -2.26 -2.13 16 7 C -0.14 -1.91 4.24 36.01 0.15 -1.76 16 8 C 0.53 9.52 7.69 -10.98 -0.08 9.44 16 9 O -0.52 -11.60 15.44 5.56 0.09 -11.51 16 10 N -0.58 -10.29 2.46 -175.06 -0.43 -10.72 16 11 C 0.22 4.69 4.23 -5.19 -0.02 4.66 16 12 C -0.53 -14.34 9.94 -34.44 -0.34 -14.69 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 16 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 20 C 0.11 1.48 5.17 -4.05 -0.02 1.46 16 21 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 22 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 23 N -0.44 -6.39 18.54 42.16 0.78 -5.61 16 24 N -0.49 -6.06 9.43 -12.11 -0.11 -6.18 16 25 C 0.11 1.14 10.85 -17.57 -0.19 0.95 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.12 1.57 7.40 -51.92 -0.38 1.18 16 32 H 0.11 1.32 7.19 -51.92 -0.37 0.94 16 33 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 38 H 0.11 0.86 7.22 -51.93 -0.38 0.49 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -34.64 364.06 -7.75 -42.39 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.16 Total: -1.39 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.25 Total: -0.17 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 1.01 Total: -48.48 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.26 Total: -2.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.64 -7.75 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042173175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.570 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds