Wall clock time and date at job start Tue Mar 31 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38907 * 120.33069 * 2 1 4 4 C 1.38272 * 118.50975 * 180.02562 * 3 2 1 5 5 C 1.39204 * 119.09650 * 359.97438 * 4 3 2 6 6 S 1.76196 * 119.71298 * 180.02562 * 5 4 3 7 7 C 1.81393 * 103.00181 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47373 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99530 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99664 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99548 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46859 * 89.99843 * 11 10 8 13 13 H 1.07995 * 120.00375 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00420 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00000 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47164 * 89.99981 * 16 14 12 18 18 H 1.48505 * 109.47518 * 210.00102 * 16 14 12 19 19 H 1.48502 * 109.47050 * 329.99832 * 16 14 12 20 20 C 1.46498 * 120.00395 * 0.02562 * 10 8 7 21 21 C 1.52993 * 109.47126 * 90.00142 * 20 10 8 22 22 C 1.47201 * 109.47408 * 180.02562 * 21 20 10 23 23 N 8.14447 * 118.68473 * 191.66834 * 2 1 3 24 24 N 1.32459 * 120.57265 * 0.02562 * 5 4 3 25 25 C 1.31964 * 121.61770 * 359.97438 * 24 5 4 26 26 H 1.08994 * 109.47136 * 269.98133 * 1 2 3 27 27 H 1.08998 * 109.46561 * 29.97730 * 1 2 3 28 28 H 1.09000 * 109.46828 * 149.97778 * 1 2 3 29 29 H 1.07992 * 120.74727 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.45193 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47041 * 300.00066 * 7 6 5 32 32 H 1.09007 * 109.46962 * 59.99574 * 7 6 5 33 33 H 1.08999 * 109.46863 * 209.99930 * 11 10 8 34 34 H 1.09006 * 109.46811 * 329.99945 * 11 10 8 35 35 H 0.97004 * 120.00685 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46800 * 210.00109 * 20 10 8 37 37 H 1.08992 * 109.47148 * 329.99755 * 20 10 8 38 38 H 1.09000 * 109.47254 * 299.99689 * 21 20 10 39 39 H 1.08997 * 109.47860 * 59.99625 * 21 20 10 40 40 H 1.07997 * 119.56500 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1989 0.0000 4 6 3.5905 1.1550 -0.0005 5 6 4.2285 -0.0823 -0.0005 6 16 5.9888 -0.1572 -0.0005 7 6 6.3214 -1.9404 -0.0013 8 6 7.8102 -2.1738 -0.0020 9 8 8.5719 -1.2300 -0.0015 10 7 8.2951 -3.4313 -0.0021 11 6 9.7425 -3.6581 -0.0022 12 6 10.2389 -3.7360 1.4185 13 1 9.5457 -3.6269 2.2394 14 6 11.5780 -3.9464 1.6704 15 7 12.0111 -4.0149 2.9102 16 14 12.7771 -4.1343 0.2505 17 1 13.3122 -2.8010 -0.1253 18 1 13.8968 -5.0190 0.6618 19 1 12.0758 -4.7325 -0.9139 20 6 7.3750 -4.5712 -0.0021 21 6 7.0546 -4.9680 -1.4446 22 6 6.1296 -6.1131 -1.4446 23 7 5.4163 -6.9973 -1.4450 24 7 3.5236 -1.2037 -0.0005 25 6 2.2040 -1.1914 0.0000 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3632 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6862 2.1442 0.0004 30 1 4.1672 2.0682 -0.0010 31 1 5.8828 -2.3921 0.8885 32 1 5.8828 -2.3914 -0.8915 33 1 9.9636 -4.5936 -0.5162 34 1 10.2392 -2.8351 -0.5161 35 1 12.9533 -4.1626 3.0874 36 1 7.8394 -5.4129 0.5116 37 1 6.4544 -4.2951 0.5118 38 1 6.5902 -4.1263 -1.9583 39 1 7.9752 -5.2442 -1.9586 40 1 1.6624 -2.1258 0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042173175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:05 Heat of formation + Delta-G solvation = 4.277957 kcal Electronic energy + Delta-G solvation = -23102.183209 eV Core-core repulsion = 19621.516950 eV Total energy + Delta-G solvation = -3480.666259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98469 -40.85403 -38.04467 -36.79615 -34.85282 -34.53471 -32.90005 -32.47565 -31.53415 -29.16460 -28.21038 -25.30353 -24.66403 -24.27013 -23.18840 -20.30134 -19.23523 -18.97766 -18.45458 -18.10800 -17.53587 -17.09203 -16.54899 -16.29065 -15.97318 -15.81020 -15.66861 -15.35962 -14.95769 -14.67826 -14.46792 -14.24582 -14.00826 -13.84455 -13.71538 -13.59588 -13.57085 -13.33125 -13.25125 -12.99671 -12.72580 -12.52824 -12.37445 -11.98869 -11.93038 -11.69070 -11.44062 -10.87617 -10.78323 -10.76776 -10.57161 -10.52847 -9.56213 -8.51650 -8.27605 -6.32964 0.01158 0.30902 0.31422 1.21103 1.39766 1.44242 1.51204 1.56934 1.74158 1.83374 2.21923 2.37167 2.70789 3.03013 3.10358 3.53076 3.65524 3.93135 3.96771 3.99471 4.07704 4.09098 4.09273 4.23939 4.32321 4.54117 4.66839 4.77295 4.84484 4.88081 4.91060 4.97494 5.04393 5.06509 5.20542 5.36196 5.50293 5.55448 5.72538 6.26699 6.49877 6.60537 6.70487 6.77845 7.18003 7.33682 8.89361 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.003274 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.748225 B = 8550.500974 C = 9926.757562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C -0.060 4.060 4 C -0.154 4.154 5 C 0.084 3.916 6 S -0.043 6.043 7 C -0.116 4.116 8 C 0.522 3.478 9 O -0.567 6.567 10 N -0.586 5.586 11 C 0.222 3.778 12 C -0.535 4.535 13 H 0.028 0.972 14 C 0.009 3.991 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.224 1.224 20 C 0.110 3.890 21 C -0.037 4.037 22 C 0.244 3.756 23 N -0.488 5.488 24 N -0.509 5.509 25 C 0.098 3.902 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.897 6.992 -11.167 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.149 4.149 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.164 4.164 6 S 0.198 5.802 7 C -0.267 4.267 8 C 0.309 3.691 9 O -0.446 6.446 10 N -0.316 5.316 11 C 0.101 3.899 12 C -0.574 4.574 13 H 0.047 0.953 14 C -0.189 4.189 15 N -0.590 5.590 16 Si 0.767 3.233 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.147 1.147 20 C -0.015 4.015 21 C -0.078 4.078 22 C -0.073 4.073 23 N -0.166 5.166 24 N -0.222 5.222 25 C -0.063 4.063 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.186 0.814 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.023 6.132 -11.070 25.400 hybrid contribution 0.084 -0.058 0.356 0.370 sum -21.939 6.074 -10.714 25.159 Atomic orbital electron populations 1.20764 0.87713 1.04303 1.03442 1.21240 0.99276 0.93493 1.00865 1.21784 0.92609 0.99803 0.94483 1.21862 0.96096 0.97337 1.02761 1.23406 0.98933 0.92730 1.01331 1.86431 0.95000 1.07370 1.91419 1.23567 0.95505 0.97946 1.09714 1.20118 0.89562 0.83164 0.76303 1.90712 1.60512 1.42417 1.51005 1.47720 1.07688 1.04865 1.71323 1.19504 0.77316 0.97814 0.95301 1.21595 0.93837 1.49239 0.92724 0.95313 1.25864 1.00320 0.94226 0.98471 1.70062 1.15992 1.51354 1.21566 0.85765 0.78659 0.78555 0.80291 1.20391 1.20963 1.14687 1.21587 0.94418 0.89756 0.95740 1.19834 0.97354 0.91333 0.99291 1.29134 0.92741 0.93603 0.91837 1.81258 1.12561 1.12901 1.09862 1.68042 1.09854 1.29042 1.15233 1.23079 0.88936 0.99338 0.94900 0.90076 0.89947 0.90248 0.81362 0.83419 0.85836 0.83853 0.91571 0.95289 0.92486 0.89092 0.88402 0.84850 0.84808 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.03 71.24 0.71 0.00 16 2 C -0.14 -1.96 5.90 -19.75 -0.12 -2.08 16 3 C -0.06 -0.84 9.85 22.44 0.22 -0.62 16 4 C -0.15 -3.00 9.84 22.51 0.22 -2.78 16 5 C 0.08 2.05 7.00 84.83 0.59 2.65 16 6 S -0.04 -1.25 21.05 -56.49 -1.19 -2.44 16 7 C -0.12 -3.17 4.24 71.24 0.30 -2.86 16 8 C 0.52 18.89 7.69 87.66 0.67 19.57 16 9 O -0.57 -26.21 15.44 -3.03 -0.05 -26.26 16 10 N -0.59 -20.11 2.46 -826.16 -2.03 -22.14 16 11 C 0.22 9.49 4.23 85.63 0.36 9.85 16 12 C -0.54 -29.54 9.94 25.60 0.25 -29.28 16 13 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 14 C 0.01 0.50 5.47 84.65 0.46 0.96 16 15 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 16 Si 0.94 41.98 27.47 68.60 1.88 43.86 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.22 -8.44 6.54 99.48 0.65 -7.79 16 20 C 0.11 2.62 5.17 86.38 0.45 3.07 16 21 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 22 C 0.24 5.13 15.43 89.44 1.38 6.51 16 23 N -0.49 -13.32 18.54 20.01 0.37 -12.95 16 24 N -0.51 -11.88 9.43 -192.22 -1.81 -13.69 16 25 C 0.10 1.71 10.85 84.62 0.92 2.63 16 26 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 28 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 29 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.12 3.21 7.40 -2.39 -0.02 3.19 16 32 H 0.14 2.98 7.19 -2.39 -0.02 2.97 16 33 H 0.07 2.44 7.13 -2.39 -0.02 2.42 16 34 H 0.03 1.33 6.85 -2.38 -0.02 1.31 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 37 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 38 H 0.13 1.59 7.22 -2.39 -0.02 1.57 16 39 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -80.42 364.06 5.09 -75.33 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.00 Total: 9.74 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.61 Total: 7.18 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.17 Total: -107.42 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -1.19 Total: -2.44 kcal Total: -80.42 5.09 -75.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042173175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.608 kcal (2) G-P(sol) polarization free energy of solvation -80.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds