Wall clock time and date at job start Tue Mar 31 2020 12:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30852 * 126.19992 * 2 1 4 4 C 1.34600 * 107.29118 * 180.11500 * 3 2 1 5 5 C 1.47703 * 126.02853 * 179.83401 * 4 3 2 6 6 O 1.21477 * 120.00129 * 179.69051 * 5 4 3 7 7 O 1.34729 * 119.99890 * 359.69057 * 5 4 3 8 8 C 1.45206 * 116.99812 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46953 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00355 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 89.99924 * 14 12 10 16 16 H 1.48498 * 109.47131 * 210.00227 * 14 12 10 17 17 H 1.48500 * 109.47362 * 330.00383 * 14 12 10 18 18 N 1.31621 * 107.93956 * 359.57089 * 4 3 2 19 19 N 1.28849 * 108.69610 * 0.26286 * 18 4 3 20 20 C 1.40186 * 125.76577 * 180.02562 * 19 18 4 21 21 C 1.38847 * 120.03973 * 144.70031 * 20 19 18 22 22 C 1.38094 * 119.95096 * 179.70085 * 21 20 19 23 23 C 1.38492 * 120.04344 * 0.59837 * 22 21 20 24 24 F 1.35104 * 119.95707 * 179.70452 * 23 22 21 25 25 C 1.38491 * 120.08452 * 359.67903 * 23 22 21 26 26 C 1.38087 * 120.04518 * 0.02562 * 25 23 22 27 27 H 1.08996 * 109.47746 * 270.36314 * 1 2 3 28 28 H 1.08997 * 109.47266 * 30.36489 * 1 2 3 29 29 H 1.09002 * 109.47135 * 150.36169 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00016 * 8 7 5 31 31 H 1.09001 * 109.46626 * 60.00033 * 8 7 5 32 32 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 33 33 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 34 34 H 0.96991 * 119.99886 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.02375 * 359.97438 * 21 20 19 36 36 H 1.08009 * 119.97877 * 180.29526 * 22 21 20 37 37 H 1.08003 * 119.97643 * 180.02562 * 25 23 22 38 38 H 1.08002 * 120.02355 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2798 1.0559 0.0000 4 6 3.5532 0.6197 -0.0026 5 6 4.7621 1.4683 -0.0070 6 8 5.8637 0.9561 -0.0033 7 8 4.6432 2.8103 -0.0151 8 6 5.8738 3.5811 -0.0196 9 6 5.5402 5.0742 -0.0293 10 6 6.8173 5.8742 -0.0346 11 1 7.7715 5.3683 -0.0318 12 6 6.7678 7.2521 -0.0430 13 7 7.8823 7.9502 -0.0481 14 14 5.1174 8.1272 -0.0485 15 1 4.6800 8.3676 1.3501 16 1 5.2482 9.4260 -0.7565 17 1 4.1121 7.2837 -0.7434 18 7 3.5309 -0.6963 0.0053 19 7 2.3036 -1.0886 0.0070 20 6 1.8695 -2.4215 0.0152 21 6 0.7211 -2.7743 0.7113 22 6 0.2917 -4.0867 0.7130 23 6 1.0126 -5.0530 0.0315 24 9 0.5942 -6.3376 0.0393 25 6 2.1616 -4.7041 -0.6586 26 6 2.5908 -3.3917 -0.6678 27 1 -0.3634 0.0065 1.0276 28 1 -0.3633 0.8867 -0.5195 29 1 -0.3633 -0.8932 -0.5082 30 1 6.4544 3.3438 0.8719 31 1 6.4545 3.3331 -0.9081 32 1 4.9598 5.3111 -0.9209 33 1 4.9593 5.3225 0.8590 34 1 7.8473 8.9195 -0.0544 35 1 0.1615 -2.0219 1.2472 36 1 -0.6042 -4.3608 1.2504 37 1 2.7222 -5.4590 -1.1899 38 1 3.4866 -3.1199 -1.2064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053922630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:24 Heat of formation + Delta-G solvation = -26.060756 kcal Electronic energy + Delta-G solvation = -24801.010486 eV Core-core repulsion = 20752.815465 eV Total energy + Delta-G solvation = -4048.195021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.03294 -45.02692 -41.49575 -40.27975 -37.92687 -35.78842 -35.38788 -34.58186 -32.84965 -32.37752 -30.82508 -29.32555 -27.81875 -26.14154 -24.63213 -23.76238 -22.81748 -22.41738 -21.71514 -19.88243 -19.14393 -18.82887 -18.42346 -18.37277 -17.84048 -17.60981 -17.02190 -16.69389 -16.30548 -15.75268 -15.46388 -15.27969 -14.97375 -14.86664 -14.51070 -14.46943 -14.30688 -14.13971 -13.93044 -13.53575 -13.37678 -13.21981 -12.96988 -12.60939 -12.54191 -12.27027 -12.00564 -11.93800 -11.82793 -11.80102 -11.56742 -11.51079 -10.94320 -10.81012 -10.37490 -9.69966 -8.34230 -6.42474 -0.71005 -0.02052 0.04231 0.63771 0.78755 1.38869 1.40120 1.42222 1.53908 1.75858 2.25911 2.35006 2.72595 3.00368 3.04715 3.15372 3.36750 3.57365 3.60468 3.97007 4.01375 4.10272 4.12384 4.23957 4.45610 4.53271 4.57431 4.61326 4.72246 4.80202 4.85227 4.88588 4.95018 5.00255 5.14958 5.25960 5.29004 5.39304 5.49333 5.65699 6.15071 6.31106 6.63039 6.71193 7.22362 8.81534 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.002179 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.264269 B =12846.902655 C =13548.716297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.233 3.767 3 N -0.483 5.483 4 C 0.149 3.851 5 C 0.563 3.437 6 O -0.512 6.512 7 O -0.336 6.336 8 C 0.092 3.908 9 C -0.002 4.002 10 C -0.541 4.541 11 H 0.039 0.961 12 C 0.013 3.987 13 N -0.942 5.942 14 Si 0.952 3.048 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.246 1.246 18 N -0.258 5.258 19 N -0.244 5.244 20 C 0.082 3.918 21 C -0.070 4.070 22 C -0.120 4.120 23 C 0.110 3.890 24 F -0.135 7.135 25 C -0.134 4.134 26 C -0.076 4.076 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.271 0.729 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.164 0.836 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.055 -29.093 0.668 39.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 N -0.209 5.209 4 C -0.127 4.127 5 C 0.404 3.596 6 O -0.398 6.398 7 O -0.250 6.250 8 C 0.019 3.981 9 C -0.040 4.040 10 C -0.579 4.579 11 H 0.057 0.943 12 C -0.185 4.185 13 N -0.581 5.581 14 Si 0.775 3.225 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.170 1.170 18 N -0.099 5.099 19 N -0.035 5.035 20 C -0.007 4.007 21 C -0.090 4.090 22 C -0.139 4.139 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.153 4.153 26 C -0.096 4.096 27 H 0.145 0.855 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.182 0.818 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.081 -29.012 0.666 38.356 hybrid contribution 0.623 0.435 -0.148 0.774 sum -24.458 -28.577 0.518 37.618 Atomic orbital electron populations 1.20958 0.78336 1.07251 1.07166 1.26182 0.99597 0.79931 0.98311 1.71431 0.99628 1.29312 1.20541 1.22012 0.91785 0.87963 1.10917 1.19046 0.85710 0.81797 0.73034 1.90855 1.27480 1.75343 1.46114 1.86592 1.39178 1.16656 1.82612 1.23223 0.82021 0.90892 1.02005 1.19473 0.96878 0.88954 0.98672 1.21065 0.92335 0.92000 1.52512 0.94306 1.25920 1.01081 0.98094 0.93423 1.70031 1.29484 1.07363 1.51268 0.85627 0.79388 0.77949 0.79581 1.18731 1.20416 1.16957 1.74366 1.03382 1.12679 1.19470 1.44692 1.02420 1.07779 1.48580 1.17977 0.99182 0.78745 1.04806 1.21244 0.93705 0.97861 0.96160 1.21353 1.02049 0.90408 1.00111 1.18030 0.94770 0.79252 0.98925 1.91555 1.89588 1.35417 1.94769 1.21221 0.96620 0.96434 1.01066 1.20952 0.99525 0.91832 0.97258 0.85514 0.87227 0.86570 0.91520 0.91550 0.94566 0.94637 0.92005 0.80554 0.79817 0.81827 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 8.67 71.24 0.62 0.12 16 2 C 0.23 4.67 7.79 138.07 1.08 5.74 16 3 N -0.48 -14.64 11.42 -180.78 -2.07 -16.71 16 4 C 0.15 5.22 7.99 137.03 1.09 6.32 16 5 C 0.56 22.94 7.97 70.32 0.56 23.50 16 6 O -0.51 -22.76 16.88 19.91 0.34 -22.42 16 7 O -0.34 -14.31 10.23 -56.39 -0.58 -14.88 16 8 C 0.09 4.15 5.41 71.98 0.39 4.54 16 9 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 10 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 11 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 12 C 0.01 0.77 5.47 84.65 0.46 1.23 16 13 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 14 Si 0.95 44.31 27.47 68.60 1.88 46.20 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 18 N -0.26 -7.96 11.76 -52.48 -0.62 -8.58 16 19 N -0.24 -5.29 3.47 -179.18 -0.62 -5.91 16 20 C 0.08 1.15 6.22 38.10 0.24 1.39 16 21 C -0.07 -0.41 8.25 22.38 0.18 -0.23 16 22 C -0.12 -0.46 10.02 22.30 0.22 -0.24 16 23 C 0.11 0.87 7.30 22.39 0.16 1.03 16 24 F -0.13 -1.33 17.27 44.97 0.78 -0.55 16 25 C -0.13 -1.23 10.02 22.29 0.22 -1.01 16 26 C -0.08 -1.03 9.70 22.38 0.22 -0.81 16 27 H 0.13 0.11 7.72 -2.39 -0.02 0.09 16 28 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.12 0.10 6.87 -2.39 -0.02 0.08 16 30 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 31 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 33 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.18 0.05 6.08 -2.91 -0.02 0.03 16 36 H 0.18 -0.42 8.06 -2.91 -0.02 -0.44 16 37 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.14 2.17 8.02 -2.91 -0.02 2.15 16 Total: -1.00 -80.60 342.39 6.30 -74.30 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: 1.05 Total: -2.57 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.83 Total: 9.94 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -3.00 Total: -90.01 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.24 Total: -37.30 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.55 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -80.60 6.30 -74.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.238 kcal (2) G-P(sol) polarization free energy of solvation -80.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds