Wall clock time and date at job start Tue Mar 31 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99919 * 2 1 4 4 N 1.46504 * 109.47212 * 125.00216 * 3 2 1 5 5 C 1.36730 * 127.18581 * 264.65995 * 4 3 2 6 6 S 1.76202 * 126.38783 * 359.97438 * 5 4 3 7 7 C 1.81004 * 99.99917 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47218 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47073 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99777 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99776 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00147 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47125 * 89.99960 * 13 11 9 15 15 H 1.48502 * 109.47143 * 209.99996 * 13 11 9 16 16 H 1.48494 * 109.47217 * 329.99735 * 13 11 9 17 17 N 1.31291 * 107.22075 * 179.89430 * 5 4 3 18 18 N 1.28499 * 110.10435 * 0.37663 * 17 5 4 19 19 C 1.31251 * 109.98601 * 359.76116 * 18 17 5 20 20 C 1.47917 * 126.47075 * 179.97438 * 19 18 17 21 21 C 1.46833 * 127.13755 * 226.48369 * 20 19 18 22 22 C 1.34323 * 106.02230 * 179.86972 * 21 20 19 23 23 O 1.34169 * 109.05042 * 0.39973 * 22 21 20 24 24 C 1.34092 * 110.78300 * 359.73601 * 23 22 21 25 25 C 1.50698 * 125.78929 * 180.02562 * 24 23 22 26 26 H 1.07997 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99837 * 179.72112 * 1 2 3 28 28 H 1.08001 * 120.00479 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47527 * 245.00198 * 3 2 1 30 30 H 1.09003 * 109.47097 * 5.00457 * 3 2 1 31 31 H 1.08997 * 109.47439 * 300.00078 * 7 6 5 32 32 H 1.09001 * 109.46653 * 60.00209 * 7 6 5 33 33 H 1.08997 * 109.47154 * 300.00467 * 8 7 6 34 34 H 1.08996 * 109.47099 * 59.99903 * 8 7 6 35 35 H 0.97003 * 119.99754 * 180.02562 * 12 11 9 36 36 H 1.08000 * 126.99020 * 0.02562 * 21 20 19 37 37 H 1.08003 * 125.47320 * 180.09641 * 22 21 20 38 38 H 1.09003 * 109.46962 * 269.99397 * 25 24 23 39 39 H 1.08997 * 109.47338 * 29.99943 * 25 24 23 40 40 H 1.09003 * 109.47050 * 149.99935 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7802 1.8837 2.3641 6 16 1.3184 2.7078 2.9014 7 6 1.8012 3.1333 4.5931 8 6 0.6545 3.8790 5.2785 9 6 1.0568 4.2338 6.6868 10 1 2.0329 3.9557 7.0559 11 6 0.1791 4.9145 7.5037 12 7 0.5299 5.2237 8.7329 13 14 -1.5090 5.3962 6.8650 14 1 -2.4762 4.3064 7.1516 15 1 -1.9550 6.6432 7.5368 16 1 -1.4377 5.6220 5.3991 17 7 3.8668 1.6834 3.0732 18 7 4.7423 1.0561 2.3723 19 6 4.2665 0.8125 1.1735 20 6 4.9670 0.1122 0.0751 21 6 5.0524 0.5293 -1.3302 22 6 5.7866 -0.4084 -1.9513 23 8 6.1410 -1.3478 -1.0613 24 6 5.6608 -1.0552 0.1560 25 6 5.8572 -1.8793 1.4023 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0046 28 1 1.8501 -0.9353 -0.0004 29 1 2.6212 1.4027 -0.9313 30 1 1.3585 2.1316 0.0897 31 1 2.0250 2.2218 5.1473 32 1 2.6854 3.7703 4.5692 33 1 0.4312 4.7906 4.7242 34 1 -0.2300 3.2425 5.3023 35 1 -0.0877 5.7022 9.3077 36 1 4.6160 1.4121 -1.7736 37 1 6.0456 -0.4089 -2.9999 38 1 5.0468 -2.6029 1.4908 39 1 6.8097 -2.4058 1.3435 40 1 5.8569 -1.2251 2.2742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072098952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:19 Heat of formation + Delta-G solvation = 105.251912 kcal Electronic energy + Delta-G solvation = -23377.240937 eV Core-core repulsion = 19900.953237 eV Total energy + Delta-G solvation = -3476.287700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.96478 -42.45080 -36.40721 -34.02220 -33.78084 -32.88619 -32.15755 -31.31167 -30.20376 -27.31711 -26.75937 -25.61493 -23.38856 -22.64202 -21.66431 -20.77543 -20.64555 -19.62499 -18.01801 -17.25418 -16.93361 -16.57086 -16.23853 -16.05507 -15.51021 -14.80978 -14.46006 -14.08510 -13.96068 -13.77781 -13.41834 -13.37625 -13.24376 -13.20976 -12.77505 -12.70974 -12.14979 -11.91061 -11.86085 -11.47840 -11.28614 -10.92250 -10.54036 -10.42375 -10.25755 -10.20272 -10.10233 -9.93455 -9.71079 -9.57403 -9.28029 -8.73997 -8.61184 -7.37117 -6.10548 -4.11116 1.10592 1.28341 1.59001 1.73833 2.17724 2.49530 2.59038 2.78869 2.94484 3.27177 3.34884 3.37043 4.06184 4.26672 4.33871 4.38867 4.45963 4.59275 4.75655 4.91295 5.08554 5.13972 5.22032 5.22957 5.26914 5.41641 5.47509 5.54642 5.67899 5.88398 5.89352 5.93628 5.97176 6.02362 6.15436 6.24172 6.50706 6.65711 6.77629 7.01669 7.12841 7.62089 8.43269 8.69818 8.93362 9.48610 11.02170 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.002907 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.527434 B = 9630.548189 C =10433.281591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.184 4.184 3 C 0.138 3.862 4 N -0.458 5.458 5 C 0.178 3.822 6 S -0.040 6.040 7 C -0.065 4.065 8 C 0.002 3.998 9 C -0.519 4.519 10 H 0.078 0.922 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.264 1.264 17 N -0.287 5.287 18 N -0.272 5.272 19 C 0.246 3.754 20 C -0.121 4.121 21 C -0.196 4.196 22 C -0.031 4.031 23 O -0.175 6.175 24 C 0.053 3.947 25 C -0.083 4.083 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.208 0.792 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -13.555 -25.574 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.203 4.203 3 C 0.015 3.985 4 N -0.151 5.151 5 C -0.195 4.195 6 S 0.190 5.810 7 C -0.213 4.213 8 C -0.038 4.038 9 C -0.558 4.558 10 H 0.096 0.904 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.189 1.189 17 N -0.131 5.131 18 N -0.113 5.113 19 C -0.022 4.022 20 C -0.125 4.125 21 C -0.216 4.216 22 C -0.097 4.097 23 O -0.072 6.072 24 C -0.001 4.001 25 C -0.139 4.139 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.170 0.830 37 H 0.225 0.775 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.993 -13.440 -24.871 28.707 hybrid contribution -0.733 0.314 -0.835 1.155 sum 4.260 -13.126 -25.706 29.176 Atomic orbital electron populations 1.24012 0.95414 1.02882 0.96458 1.22969 0.96333 0.97619 1.03368 1.21009 0.91816 0.98004 0.87630 1.46528 1.12952 1.43849 1.11815 1.27021 1.03136 1.03912 0.85445 1.85461 1.09666 1.66154 1.19713 1.23783 1.04371 1.04886 0.88291 1.19434 0.92536 0.95172 0.96666 1.20902 1.03486 1.37176 0.94279 0.90385 1.24959 0.98357 0.95110 0.94631 1.69897 1.36473 1.40187 1.06917 0.86813 0.84678 0.78387 0.79702 1.20056 1.21137 1.18892 1.74746 0.97761 1.16347 1.24238 1.74299 1.22711 1.13918 1.00367 1.21755 0.83346 1.02068 0.95003 1.18305 1.06441 0.96696 0.91048 1.22736 1.04839 1.02045 0.92009 1.23820 1.01535 0.89174 0.95196 1.83876 1.61406 1.44896 1.16990 1.22587 0.96574 0.95267 0.85641 1.20524 1.03467 0.99366 0.90592 0.87687 0.87497 0.86811 0.87995 0.87831 0.89001 0.89009 0.95503 0.95925 0.92477 0.82991 0.77522 0.89806 0.89918 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 14.32 29.01 0.42 -0.79 16 2 C -0.18 -1.71 9.85 -36.03 -0.35 -2.06 16 3 C 0.14 1.39 6.34 -5.19 -0.03 1.36 16 4 N -0.46 -6.51 2.82 -115.35 -0.33 -6.84 16 5 C 0.18 3.09 8.07 -88.15 -0.71 2.38 16 6 S -0.04 -0.68 21.70 -107.50 -2.33 -3.01 16 7 C -0.06 -1.34 5.17 37.16 0.19 -1.15 16 8 C 0.00 0.04 4.04 -27.88 -0.11 -0.07 16 9 C -0.52 -14.58 9.66 -34.44 -0.33 -14.92 16 10 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 13 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 17 N -0.29 -5.63 11.58 30.72 0.36 -5.28 16 18 N -0.27 -4.92 11.40 32.60 0.37 -4.55 16 19 C 0.25 3.67 7.59 -153.79 -1.17 2.51 16 20 C -0.12 -1.44 6.03 -103.25 -0.62 -2.06 16 21 C -0.20 -1.75 10.18 -37.49 -0.38 -2.13 16 22 C -0.03 -0.22 12.04 29.35 0.35 0.13 16 23 O -0.18 -1.65 10.55 6.63 0.07 -1.58 16 24 C 0.05 0.56 7.37 -35.10 -0.26 0.30 16 25 C -0.08 -0.75 10.23 36.00 0.37 -0.39 16 26 H 0.10 0.79 7.84 -52.49 -0.41 0.37 16 27 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.10 0.81 6.50 -51.93 -0.34 0.48 16 30 H 0.10 0.99 7.36 -51.93 -0.38 0.61 16 31 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 32 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 33 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.15 1.08 7.50 -52.49 -0.39 0.68 16 37 H 0.21 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.16 7.17 -51.93 -0.37 0.79 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.73 360.76 -8.27 -42.00 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.21 Total: -1.20 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.74 Total: -14.93 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 1.18 Total: -43.22 kcal Atomic # 8 Polarization: -1.65 SS G_CDS: 0.07 Total: -1.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.33 Total: -3.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.73 -8.27 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072098952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.256 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds