Wall clock time and date at job start Tue Mar 31 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99919 * 2 1 4 4 N 1.46504 * 109.47212 * 125.00216 * 3 2 1 5 5 C 1.36730 * 127.18581 * 264.65995 * 4 3 2 6 6 S 1.76202 * 126.38783 * 359.97438 * 5 4 3 7 7 C 1.81004 * 99.99917 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47218 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47073 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99777 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99776 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00147 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47125 * 89.99960 * 13 11 9 15 15 H 1.48502 * 109.47143 * 209.99996 * 13 11 9 16 16 H 1.48494 * 109.47217 * 329.99735 * 13 11 9 17 17 N 1.31291 * 107.22075 * 179.89430 * 5 4 3 18 18 N 1.28499 * 110.10435 * 0.37663 * 17 5 4 19 19 C 1.31251 * 109.98601 * 359.76116 * 18 17 5 20 20 C 1.47917 * 126.47075 * 179.97438 * 19 18 17 21 21 C 1.46833 * 127.13755 * 226.48369 * 20 19 18 22 22 C 1.34323 * 106.02230 * 179.86972 * 21 20 19 23 23 O 1.34169 * 109.05042 * 0.39973 * 22 21 20 24 24 C 1.34092 * 110.78300 * 359.73601 * 23 22 21 25 25 C 1.50698 * 125.78929 * 180.02562 * 24 23 22 26 26 H 1.07997 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99837 * 179.72112 * 1 2 3 28 28 H 1.08001 * 120.00479 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47527 * 245.00198 * 3 2 1 30 30 H 1.09003 * 109.47097 * 5.00457 * 3 2 1 31 31 H 1.08997 * 109.47439 * 300.00078 * 7 6 5 32 32 H 1.09001 * 109.46653 * 60.00209 * 7 6 5 33 33 H 1.08997 * 109.47154 * 300.00467 * 8 7 6 34 34 H 1.08996 * 109.47099 * 59.99903 * 8 7 6 35 35 H 0.97003 * 119.99754 * 180.02562 * 12 11 9 36 36 H 1.08000 * 126.99020 * 0.02562 * 21 20 19 37 37 H 1.08003 * 125.47320 * 180.09641 * 22 21 20 38 38 H 1.09003 * 109.46962 * 269.99397 * 25 24 23 39 39 H 1.08997 * 109.47338 * 29.99943 * 25 24 23 40 40 H 1.09003 * 109.47050 * 149.99935 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7802 1.8837 2.3641 6 16 1.3184 2.7078 2.9014 7 6 1.8012 3.1333 4.5931 8 6 0.6545 3.8790 5.2785 9 6 1.0568 4.2338 6.6868 10 1 2.0329 3.9557 7.0559 11 6 0.1791 4.9145 7.5037 12 7 0.5299 5.2237 8.7329 13 14 -1.5090 5.3962 6.8650 14 1 -2.4762 4.3064 7.1516 15 1 -1.9550 6.6432 7.5368 16 1 -1.4377 5.6220 5.3991 17 7 3.8668 1.6834 3.0732 18 7 4.7423 1.0561 2.3723 19 6 4.2665 0.8125 1.1735 20 6 4.9670 0.1122 0.0751 21 6 5.0524 0.5293 -1.3302 22 6 5.7866 -0.4084 -1.9513 23 8 6.1410 -1.3478 -1.0613 24 6 5.6608 -1.0552 0.1560 25 6 5.8572 -1.8793 1.4023 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0046 28 1 1.8501 -0.9353 -0.0004 29 1 2.6212 1.4027 -0.9313 30 1 1.3585 2.1316 0.0897 31 1 2.0250 2.2218 5.1473 32 1 2.6854 3.7703 4.5692 33 1 0.4312 4.7906 4.7242 34 1 -0.2300 3.2425 5.3023 35 1 -0.0877 5.7022 9.3077 36 1 4.6160 1.4121 -1.7736 37 1 6.0456 -0.4089 -2.9999 38 1 5.0468 -2.6029 1.4908 39 1 6.8097 -2.4058 1.3435 40 1 5.8569 -1.2251 2.2742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072098952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:19 Heat of formation + Delta-G solvation = 86.472098 kcal Electronic energy + Delta-G solvation = -23378.055291 eV Core-core repulsion = 19900.953237 eV Total energy + Delta-G solvation = -3477.102054 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.00984 -43.34025 -37.33273 -35.79949 -34.86351 -33.80418 -33.34859 -32.84443 -31.36482 -28.21006 -27.68328 -27.42751 -24.44161 -23.88656 -22.77349 -22.25349 -21.43576 -20.46336 -19.17790 -18.94583 -18.08345 -17.44537 -17.36006 -17.06350 -16.44019 -16.29079 -15.79335 -15.60395 -15.14148 -14.80759 -14.78959 -14.40088 -14.18638 -13.94690 -13.89001 -13.77007 -13.49469 -13.13261 -12.89453 -12.72382 -12.61865 -12.33103 -12.22415 -11.99739 -11.84425 -11.66245 -11.44473 -11.36637 -11.18917 -10.79187 -10.62469 -10.50935 -9.53517 -8.70519 -8.30740 -6.38158 -0.06988 0.15456 0.74923 0.95744 1.04041 1.26968 1.38585 1.40735 1.52269 1.66580 1.78313 1.95664 2.36077 3.03773 3.19456 3.45776 3.60711 3.73023 3.81606 4.02354 4.07559 4.12924 4.20083 4.28956 4.41493 4.51972 4.54306 4.64360 4.69539 4.70054 4.77308 4.85374 4.91771 5.15787 5.17272 5.25206 5.33527 5.50749 5.51593 5.52886 5.67697 6.05291 6.21331 6.68369 7.25743 7.43602 8.85880 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.002907 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.527434 B = 9630.548189 C =10433.281591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.200 4.200 3 C 0.130 3.870 4 N -0.449 5.449 5 C 0.158 3.842 6 S 0.021 5.979 7 C -0.069 4.069 8 C 0.009 3.991 9 C -0.534 4.534 10 H 0.032 0.968 11 C 0.009 3.991 12 N -0.948 5.948 13 Si 0.951 3.049 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.240 1.240 17 N -0.329 5.329 18 N -0.313 5.313 19 C 0.265 3.735 20 C -0.153 4.153 21 C -0.209 4.209 22 C -0.011 4.011 23 O -0.177 6.177 24 C 0.050 3.950 25 C -0.084 4.084 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.269 0.731 36 H 0.170 0.830 37 H 0.254 0.746 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -14.308 -29.746 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.219 4.219 3 C 0.009 3.991 4 N -0.143 5.143 5 C -0.217 4.217 6 S 0.251 5.749 7 C -0.219 4.219 8 C -0.030 4.030 9 C -0.574 4.574 10 H 0.050 0.950 11 C -0.189 4.189 12 N -0.588 5.588 13 Si 0.773 3.227 14 H -0.187 1.187 15 H -0.208 1.208 16 H -0.163 1.163 17 N -0.173 5.173 18 N -0.153 5.153 19 C -0.003 4.003 20 C -0.158 4.158 21 C -0.228 4.228 22 C -0.076 4.076 23 O -0.073 6.073 24 C -0.004 4.004 25 C -0.140 4.140 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.187 0.813 37 H 0.270 0.730 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.319 -14.210 -29.077 32.533 hybrid contribution -0.068 0.429 0.341 0.552 sum 3.251 -13.781 -28.736 32.035 Atomic orbital electron populations 1.24246 0.95018 1.04026 0.94207 1.22880 0.96727 0.96906 1.05365 1.21399 0.91747 0.98879 0.87038 1.46765 1.13189 1.42653 1.11645 1.27029 1.02969 1.04911 0.86763 1.84905 1.08599 1.66111 1.15332 1.23405 1.02973 1.03677 0.91800 1.19263 0.93634 0.96011 0.94136 1.21203 1.01870 1.37191 0.97087 0.94981 1.26007 1.03355 0.94893 0.94643 1.70064 1.38496 1.41488 1.08714 0.85646 0.78454 0.78265 0.80307 1.18707 1.20804 1.16299 1.74640 0.98987 1.17654 1.26020 1.74213 1.23411 1.15627 1.02045 1.22240 0.83334 1.00112 0.94660 1.18532 1.07722 0.97722 0.91780 1.22954 1.06072 1.03429 0.90394 1.24705 0.99247 0.87344 0.96324 1.83909 1.61165 1.45532 1.16729 1.22739 0.96004 0.95137 0.86478 1.20522 1.05102 0.99065 0.89291 0.86792 0.86123 0.87349 0.85682 0.87038 0.90559 0.90628 0.94473 0.94579 0.92206 0.81271 0.73019 0.88697 0.87848 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 14.32 67.78 0.97 -0.85 16 2 C -0.20 -3.28 9.85 25.65 0.25 -3.02 16 3 C 0.13 2.34 6.34 85.63 0.54 2.89 16 4 N -0.45 -12.46 2.82 -518.85 -1.46 -13.93 16 5 C 0.16 5.50 8.07 179.49 1.45 6.95 16 6 S 0.02 0.69 21.70 -56.49 -1.23 -0.53 16 7 C -0.07 -2.93 5.17 71.98 0.37 -2.56 16 8 C 0.01 0.42 4.04 29.85 0.12 0.54 16 9 C -0.53 -31.12 9.66 25.60 0.25 -30.88 16 10 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 11 C 0.01 0.51 5.47 84.65 0.46 0.97 16 12 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 13 Si 0.95 43.10 27.47 68.60 1.88 44.98 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 17 N -0.33 -13.47 11.58 -56.73 -0.66 -14.13 16 18 N -0.31 -11.77 11.40 -50.78 -0.58 -12.35 16 19 C 0.26 7.93 7.59 136.25 1.03 8.97 16 20 C -0.15 -3.50 6.03 -18.98 -0.11 -3.61 16 21 C -0.21 -3.14 10.18 23.63 0.24 -2.90 16 22 C -0.01 -0.12 12.04 66.92 0.81 0.69 16 23 O -0.18 -2.86 10.55 0.82 0.01 -2.86 16 24 C 0.05 1.01 7.37 25.17 0.19 1.20 16 25 C -0.08 -1.49 10.23 71.24 0.73 -0.77 16 26 H 0.11 1.31 7.84 -2.91 -0.02 1.29 16 27 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.11 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.13 1.65 6.50 -2.39 -0.02 1.63 16 30 H 0.11 1.82 7.36 -2.39 -0.02 1.81 16 31 H 0.08 3.41 8.14 -2.40 -0.02 3.39 16 32 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 34 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.17 1.84 7.50 -2.91 -0.02 1.82 16 37 H 0.25 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.87 7.17 -2.39 -0.02 1.85 16 Total: -1.00 -77.52 360.76 6.56 -70.96 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.99 Total: 9.64 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 7.30 Total: -22.39 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -2.40 Total: -99.81 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.01 Total: -2.86 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.23 Total: -0.53 kcal Total: -77.52 6.56 -70.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072098952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.431 kcal (2) G-P(sol) polarization free energy of solvation -77.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds