Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99998 * 2 1 4 4 H 1.48504 * 109.46838 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47204 * 299.99845 * 3 2 1 6 6 H 1.48501 * 109.46958 * 59.99912 * 3 2 1 7 7 C 1.38803 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99950 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.80992 * 99.99806 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47188 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47388 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47049 * 174.61265 * 12 11 10 14 14 C 1.46904 * 110.99745 * 74.97494 * 13 12 11 15 15 C 1.52998 * 117.49905 * 2.68531 * 14 13 12 16 16 C 1.53000 * 117.49467 * 294.02942 * 14 13 12 17 17 C 1.46907 * 111.00081 * 198.91964 * 13 12 11 18 18 H 1.08989 * 109.64358 * 295.62225 * 17 13 12 19 19 C 1.53874 * 109.53629 * 175.25688 * 17 13 12 20 20 C 1.55056 * 106.62173 * 193.03366 * 19 17 13 21 21 S 1.83284 * 102.56393 * 42.43829 * 20 19 17 22 22 O 1.42095 * 109.35448 * 90.18746 * 21 20 19 23 23 O 1.42101 * 109.35269 * 223.38584 * 21 20 19 24 24 C 1.54163 * 109.64264 * 56.05396 * 17 13 12 25 25 H 0.97005 * 119.99951 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47402 * 60.00501 * 10 9 7 27 27 H 1.08994 * 109.47657 * 299.99962 * 10 9 7 28 28 H 1.08998 * 109.46719 * 60.00473 * 11 10 9 29 29 H 1.09003 * 109.47120 * 300.00504 * 11 10 9 30 30 H 1.09009 * 109.46923 * 54.62057 * 12 11 10 31 31 H 1.08997 * 109.47200 * 294.61851 * 12 11 10 32 32 H 1.08999 * 115.55218 * 148.36674 * 14 13 12 33 33 H 1.09002 * 117.50144 * 0.02562 * 15 14 13 34 34 H 1.08998 * 117.49936 * 145.02287 * 15 14 13 35 35 H 1.09004 * 117.49933 * 214.98516 * 16 14 13 36 36 H 1.08996 * 117.50295 * 359.97438 * 16 14 13 37 37 H 1.09002 * 110.03009 * 73.74845 * 19 17 13 38 38 H 1.08993 * 110.03391 * 312.32745 * 19 17 13 39 39 H 1.08996 * 110.78755 * 284.16563 * 20 19 17 40 40 H 1.08997 * 110.78623 * 160.70836 * 20 19 17 41 41 H 1.08999 * 110.32077 * 28.72619 * 24 17 13 42 42 H 1.09006 * 110.31943 * 266.53028 * 24 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8913 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 7 2.6401 -7.6787 0.1312 14 6 2.0435 -8.1404 -1.1293 15 6 2.1069 -7.1935 -2.3295 16 6 0.7760 -7.4321 -1.6120 17 6 3.6978 -8.5944 0.5793 18 1 4.4770 -8.6540 -0.1804 19 6 3.1008 -9.9922 0.8189 20 6 4.1697 -10.8041 1.5951 21 16 4.7808 -9.5876 2.8224 22 8 4.0027 -9.6829 4.0075 23 8 6.1979 -9.6638 2.8955 24 6 4.3014 -8.0814 1.9019 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8906 27 1 3.1244 -3.7313 -0.8894 28 1 1.3705 -5.4846 -0.8886 29 1 1.3708 -5.4840 0.8914 30 1 3.8127 -6.0853 0.8380 31 1 3.7041 -6.2135 -0.9341 32 1 2.1288 -9.2090 -1.3262 33 1 2.5918 -6.2282 -2.1839 34 1 2.2338 -7.6393 -3.3160 35 1 0.0277 -8.0348 -2.1268 36 1 0.3847 -6.6240 -0.9941 37 1 2.8853 -10.4746 -0.1345 38 1 2.1896 -9.9125 1.4116 39 1 4.9735 -11.1201 0.9302 40 1 3.7179 -11.6621 2.0927 41 1 3.5578 -7.5156 2.4630 42 1 5.1776 -7.4640 1.7037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -56.711646 kcal Electronic energy + Delta-G solvation = -22713.706402 eV Core-core repulsion = 19333.546635 eV Total energy + Delta-G solvation = -3380.159767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71976 -38.07722 -37.26259 -36.93664 -34.91352 -34.59747 -32.78748 -30.09800 -28.05441 -27.35225 -24.88609 -23.66537 -22.73729 -22.00458 -20.68249 -19.75556 -19.56157 -18.41686 -17.77267 -17.06298 -16.90907 -16.71809 -16.57387 -16.09818 -15.52399 -15.34069 -14.99669 -14.82905 -14.59402 -14.04823 -13.87806 -13.59782 -13.34296 -13.24382 -13.20521 -13.05995 -12.99085 -12.90895 -12.77339 -12.43531 -12.28360 -12.20170 -12.04309 -11.92625 -11.59512 -11.36870 -11.30281 -11.16521 -11.13986 -10.94394 -10.31011 -9.13393 -8.66528 -8.38532 -6.14169 -0.88312 1.30466 1.36877 1.48023 1.61895 1.74341 2.27098 2.58784 2.68851 2.95755 3.06930 3.16430 3.31308 3.40998 3.64729 3.79770 3.95072 4.00516 4.03664 4.11423 4.16610 4.18283 4.19856 4.39349 4.49102 4.61515 4.67977 4.69843 4.77214 4.83092 4.86792 4.93954 5.04908 5.10594 5.14032 5.20781 5.35914 5.38726 5.44406 5.98306 6.14933 6.17062 7.03997 8.70972 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002845 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.004730 B = 9840.354201 C =10892.924541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.071 0.929 9 S -0.195 6.195 10 C -0.089 4.089 11 C -0.100 4.100 12 C 0.053 3.947 13 N -0.504 5.504 14 C 0.024 3.976 15 C -0.223 4.223 16 C -0.191 4.191 17 C 0.089 3.911 18 H 0.087 0.913 19 C -0.118 4.118 20 C -0.553 4.553 21 S 2.393 3.607 22 O -0.982 6.982 23 O -0.982 6.982 24 C -0.593 4.593 25 H 0.271 0.729 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -24.763 -2.916 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.686 4.686 8 H 0.089 0.911 9 S 0.034 5.966 10 C -0.238 4.238 11 C -0.138 4.138 12 C -0.076 4.076 13 N -0.227 5.227 14 C -0.084 4.084 15 C -0.262 4.262 16 C -0.229 4.229 17 C -0.020 4.020 18 H 0.105 0.895 19 C -0.156 4.156 20 C -0.687 4.687 21 S 2.581 3.419 22 O -0.979 6.979 23 O -0.979 6.979 24 C -0.723 4.723 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.167 0.833 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.315 -24.950 -1.602 26.049 hybrid contribution 1.651 1.991 -1.067 2.798 sum 8.966 -22.958 -2.668 24.791 Atomic orbital electron populations 1.70159 1.07653 1.28458 1.48068 1.26054 0.96023 1.03070 0.93806 0.84984 0.78432 0.76761 0.78305 1.18703 1.19603 1.19744 1.23070 0.94672 0.92134 1.58712 0.91078 1.84631 1.13991 1.01006 1.96999 1.23176 1.00131 0.97929 1.02585 1.21672 0.98479 0.90053 1.03607 1.22286 0.96090 0.87247 1.01952 1.61894 1.30993 1.01262 1.28536 1.22896 1.00310 0.98167 0.87047 1.23641 1.02025 1.02392 0.98099 1.23436 0.91836 1.03902 1.03692 1.22124 0.93462 0.92274 0.94121 0.89499 1.22409 0.97911 0.90979 1.04326 1.30423 1.10263 1.13155 1.14843 1.08725 0.74306 0.80850 0.77994 1.93574 1.72356 1.86055 1.45890 1.93559 1.30358 1.86155 1.87845 1.30700 1.12008 1.19610 1.09982 0.91975 0.92336 0.92131 0.89730 0.92023 0.89795 0.92651 0.83254 0.89215 0.87377 0.87258 0.89400 0.85758 0.88485 0.81798 0.82219 0.83969 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.22 21.65 0.29 -54.62 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.18 9.50 67.96 0.65 -30.53 16 8 H 0.07 3.98 7.80 -2.91 -0.02 3.96 16 9 S -0.19 -10.35 21.44 -56.49 -1.21 -11.56 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.10 -3.05 4.07 30.60 0.12 -2.93 16 12 C 0.05 1.19 4.36 86.30 0.38 1.56 16 13 N -0.50 -8.75 4.50 -841.90 -3.79 -12.53 16 14 C 0.02 0.37 5.77 44.91 0.26 0.63 16 15 C -0.22 -4.08 9.02 30.62 0.28 -3.80 16 16 C -0.19 -3.76 9.56 30.62 0.29 -3.47 16 17 C 0.09 1.01 2.35 45.60 0.11 1.12 16 18 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 19 C -0.12 -0.77 5.34 31.59 0.17 -0.60 16 20 C -0.55 -2.73 7.31 72.69 0.53 -2.20 16 21 S 2.39 34.81 6.10 -56.49 -0.34 34.46 16 22 O -0.98 -23.31 18.14 -127.49 -2.31 -25.63 16 23 O -0.98 -21.60 18.15 -127.49 -2.31 -23.91 16 24 C -0.59 -7.90 5.29 72.38 0.38 -7.51 16 25 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.33 8.14 -2.40 -0.02 2.31 16 28 H 0.08 2.62 3.84 -2.39 -0.01 2.62 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 1.78 6.13 -2.38 -0.01 1.76 16 31 H 0.06 1.17 6.10 -2.39 -0.01 1.16 16 32 H 0.15 1.29 6.30 -2.39 -0.02 1.27 16 33 H 0.09 2.03 4.91 -2.39 -0.01 2.02 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.26 5.43 -2.39 -0.01 2.25 16 37 H 0.12 0.25 6.79 -2.39 -0.02 0.23 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.14 2.27 7.88 -2.39 -0.02 2.25 16 42 H 0.15 1.68 7.86 -2.38 -0.02 1.66 16 Total: -1.00 -81.48 350.77 -2.60 -84.08 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.02 Total: 13.06 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 4.04 Total: -49.47 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -3.50 Total: -67.15 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -4.63 Total: -49.54 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 24.45 SS G_CDS: -1.56 Total: 22.90 kcal Total: -81.48 -2.60 -84.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.367 kcal (2) G-P(sol) polarization free energy of solvation -81.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds