Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47020 * 240.00007 * 3 2 1 5 5 H 1.48494 * 109.47117 * 119.99751 * 3 2 1 6 6 H 1.48506 * 109.46963 * 359.97438 * 3 2 1 7 7 C 1.38798 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99683 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00347 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00171 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47150 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47002 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47075 * 182.23846 * 12 11 10 14 14 C 1.46899 * 111.00064 * 60.94725 * 13 12 11 15 15 C 1.53004 * 117.49795 * 135.67322 * 14 13 12 16 16 C 1.53000 * 117.49930 * 67.01198 * 14 13 12 17 17 C 1.46899 * 111.00110 * 296.99494 * 13 12 11 18 18 H 1.08991 * 109.64412 * 64.65399 * 17 13 12 19 19 C 1.53882 * 109.64710 * 185.08473 * 17 13 12 20 20 C 1.54975 * 106.65965 * 167.15108 * 19 17 13 21 21 S 1.83295 * 102.47887 * 317.38183 * 20 19 17 22 22 O 1.42098 * 109.35243 * 269.90017 * 21 20 19 23 23 O 1.42093 * 109.47306 * 136.73147 * 21 20 19 24 24 C 1.54166 * 109.64639 * 304.22390 * 17 13 12 25 25 H 0.96996 * 119.99881 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46931 * 299.99810 * 10 9 7 27 27 H 1.08996 * 109.47270 * 59.98981 * 10 9 7 28 28 H 1.08995 * 109.47095 * 299.99377 * 11 10 9 29 29 H 1.09004 * 109.47205 * 59.99720 * 11 10 9 30 30 H 1.08998 * 109.47439 * 302.23932 * 12 11 10 31 31 H 1.08996 * 109.47479 * 62.24195 * 12 11 10 32 32 H 1.09003 * 115.55236 * 281.34102 * 14 13 12 33 33 H 1.08997 * 117.50305 * 359.97438 * 15 14 13 34 34 H 1.08999 * 117.49603 * 145.02542 * 15 14 13 35 35 H 1.08998 * 117.50120 * 214.97908 * 16 14 13 36 36 H 1.09001 * 117.50081 * 359.97438 * 16 14 13 37 37 H 1.09001 * 110.02586 * 286.32177 * 19 17 13 38 38 H 1.09000 * 110.02873 * 47.74129 * 19 17 13 39 39 H 1.08994 * 110.75916 * 199.17928 * 20 19 17 40 40 H 1.08999 * 111.07206 * 75.73086 * 20 19 17 41 41 H 1.09007 * 110.31519 * 331.14415 * 24 17 13 42 42 H 1.08997 * 110.32066 * 93.23358 * 24 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 3.1040 1.6964 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1514 -6.3077 0.0005 13 7 2.6369 -7.6826 -0.0529 14 6 1.8582 -7.9060 -1.2783 15 6 2.1045 -9.2073 -2.0445 16 6 2.6121 -7.8782 -2.6094 17 6 1.8398 -7.9933 1.1412 18 1 0.9506 -7.3634 1.1623 19 6 1.4239 -9.4746 1.1148 20 6 0.8852 -9.8102 2.5286 21 16 2.0975 -8.9774 3.6224 22 8 3.1544 -9.8776 3.9255 23 8 1.4094 -8.3140 4.6738 24 6 2.6831 -7.7421 2.4071 25 1 -0.4850 -0.8400 -0.0004 26 1 3.1245 -3.7314 -0.8895 27 1 3.1246 -3.7313 0.8904 28 1 1.3711 -5.4841 0.8914 29 1 1.3704 -5.4847 -0.8886 30 1 3.7815 -6.1215 -0.8691 31 1 3.7380 -6.1745 0.9094 32 1 0.8415 -7.5131 -1.2675 33 1 2.8446 -9.8975 -1.6396 34 1 1.2499 -9.6702 -2.5380 35 1 2.0913 -7.4674 -3.4743 36 1 3.6858 -7.6937 -2.5759 37 1 0.6406 -9.6292 0.3727 38 1 2.2861 -10.1003 0.8840 39 1 0.8877 -10.8870 2.6974 40 1 -0.1139 -9.3995 2.6749 41 1 3.7412 -7.8936 2.1932 42 1 2.5140 -6.7320 2.7803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = -79.291603 kcal Electronic energy + Delta-G solvation = -22871.448768 eV Core-core repulsion = 19490.309860 eV Total energy + Delta-G solvation = -3381.138907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46089 -38.09991 -37.13265 -36.77465 -35.64820 -34.78397 -32.53453 -30.17111 -27.68090 -26.97485 -24.88917 -23.36361 -23.07148 -22.58983 -20.53674 -20.11959 -19.78912 -18.04668 -17.82860 -17.09977 -16.76282 -16.56505 -16.29120 -16.00184 -15.84871 -15.67577 -15.08464 -14.79831 -14.72633 -14.56646 -14.03682 -13.67154 -13.37535 -13.24913 -13.20971 -13.08050 -12.97252 -12.91096 -12.72934 -12.39236 -12.28643 -12.16707 -11.99312 -11.85064 -11.60249 -11.47398 -11.34247 -11.13233 -11.10539 -10.94356 -10.44553 -9.38129 -8.96188 -8.89077 -6.30562 -0.91399 1.40188 1.55626 1.57797 1.58537 1.77249 2.30563 2.61706 2.65329 2.91475 2.97984 3.09797 3.10466 3.39129 3.63836 3.77396 3.83668 3.97655 3.98947 4.06401 4.11852 4.14944 4.19227 4.37157 4.46471 4.53622 4.58524 4.67408 4.72055 4.82219 4.82689 4.88177 5.00422 5.04759 5.10359 5.14602 5.21952 5.38051 5.60033 5.88028 6.09232 6.13909 7.01952 8.48432 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.003213 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.275539 B = 8712.687384 C = 9976.457073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.017 4.017 3 Si 1.132 2.868 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.606 4.606 8 H 0.064 0.936 9 S -0.246 6.246 10 C -0.065 4.065 11 C -0.122 4.122 12 C 0.064 3.936 13 N -0.488 5.488 14 C -0.014 4.014 15 C -0.143 4.143 16 C -0.176 4.176 17 C 0.083 3.917 18 H 0.067 0.933 19 C -0.110 4.110 20 C -0.559 4.559 21 S 2.394 3.606 22 O -0.973 6.973 23 O -0.986 6.986 24 C -0.589 4.589 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 -23.872 -1.499 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.220 4.220 3 Si 0.950 3.050 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.201 1.201 7 C -0.754 4.754 8 H 0.082 0.918 9 S -0.018 6.018 10 C -0.215 4.215 11 C -0.162 4.162 12 C -0.066 4.066 13 N -0.210 5.210 14 C -0.123 4.123 15 C -0.180 4.180 16 C -0.213 4.213 17 C -0.027 4.027 18 H 0.085 0.915 19 C -0.149 4.149 20 C -0.692 4.692 21 S 2.582 3.418 22 O -0.971 6.971 23 O -0.983 6.983 24 C -0.719 4.719 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.882 -22.932 -0.512 23.264 hybrid contribution 0.498 -0.104 -0.627 0.807 sum 4.380 -23.036 -1.139 23.476 Atomic orbital electron populations 1.70924 1.07776 1.30151 1.45834 1.27739 0.96397 1.06161 0.91713 0.82766 0.74056 0.69915 0.78301 1.19000 1.19137 1.20146 1.23903 0.95840 0.92828 1.62822 0.91754 1.84175 1.16903 1.03295 1.97468 1.23015 0.98677 0.96689 1.03103 1.21911 0.99930 0.91885 1.02449 1.22250 0.95520 0.85007 1.03785 1.62214 1.35712 1.22870 1.00235 1.22428 0.96537 1.04694 0.88634 1.23159 1.03614 0.90178 1.01087 1.23047 1.00712 1.02216 0.95331 1.22117 0.94382 0.97872 0.88301 0.91533 1.22288 1.03873 0.93579 0.95145 1.30434 1.15110 1.14697 1.08978 1.08690 0.77641 0.77651 0.77803 1.93565 1.55719 1.63414 1.84355 1.93568 1.74690 1.75623 1.54465 1.30647 1.12219 1.17134 1.11904 0.92627 0.91811 0.91799 0.91689 0.91641 0.89955 0.89407 0.89702 0.87495 0.87314 0.88673 0.88680 0.86754 0.87519 0.81821 0.82811 0.82515 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.89 13.67 21.65 0.30 -56.59 16 2 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 3 Si 1.13 49.59 29.92 68.60 2.05 51.65 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.61 -35.20 9.50 67.95 0.65 -34.56 16 8 H 0.06 3.63 7.80 -2.91 -0.02 3.60 16 9 S -0.25 -12.76 20.46 -56.49 -1.16 -13.91 16 10 C -0.07 -2.48 5.67 71.98 0.41 -2.08 16 11 C -0.12 -3.43 4.62 30.59 0.14 -3.29 16 12 C 0.06 1.35 4.97 86.30 0.43 1.78 16 13 N -0.49 -8.16 4.67 -841.90 -3.93 -12.09 16 14 C -0.01 -0.23 3.07 44.92 0.14 -0.09 16 15 C -0.14 -1.66 9.92 30.62 0.30 -1.35 16 16 C -0.18 -2.72 9.91 30.62 0.30 -2.42 16 17 C 0.08 1.22 1.89 45.61 0.09 1.31 16 18 H 0.07 1.07 6.68 -2.39 -0.02 1.06 16 19 C -0.11 -1.01 5.05 31.57 0.16 -0.85 16 20 C -0.56 -4.63 7.31 72.66 0.53 -4.09 16 21 S 2.39 40.15 6.10 -56.49 -0.34 39.80 16 22 O -0.97 -22.78 18.15 -127.47 -2.31 -25.10 16 23 O -0.99 -25.71 18.15 -127.47 -2.31 -28.02 16 24 C -0.59 -9.01 5.37 72.38 0.39 -8.62 16 25 H 0.26 16.78 7.12 -92.71 -0.66 16.12 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 28 H 0.06 1.85 6.69 -2.39 -0.02 1.83 16 29 H 0.06 1.91 6.83 -2.39 -0.02 1.89 16 30 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 31 H 0.09 1.75 6.63 -2.39 -0.02 1.73 16 32 H 0.09 1.50 7.61 -2.39 -0.02 1.48 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.56 7.94 -2.39 -0.02 1.54 16 37 H 0.11 0.79 7.66 -2.39 -0.02 0.77 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.16 2.15 7.70 -2.38 -0.02 2.13 16 42 H 0.14 2.25 8.13 -2.39 -0.02 2.23 16 Total: -1.00 -80.98 358.70 -2.60 -83.58 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.11 Total: 15.43 kcal Atomic # 6 Polarization: -58.75 SS G_CDS: 4.00 Total: -54.75 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -3.63 Total: -68.68 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -4.63 Total: -53.12 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 16 Polarization: 27.39 SS G_CDS: -1.50 Total: 25.89 kcal Total: -80.98 -2.60 -83.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.290 kcal (2) G-P(sol) polarization free energy of solvation -80.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds