Wall clock time and date at job start Tue Mar 31 2020 12:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47256 * 2 1 4 4 C 1.34980 * 120.00040 * 94.99489 * 3 2 1 5 5 C 1.46223 * 119.99964 * 180.02562 * 4 3 2 6 6 O 1.21754 * 120.00449 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99868 * 180.02562 * 5 4 3 8 8 C 1.36711 * 119.99929 * 179.97438 * 7 5 4 9 9 H 1.07998 * 120.00299 * 222.67584 * 8 7 5 10 10 C 1.39129 * 120.00001 * 42.95078 * 8 7 5 11 11 N 1.31315 * 119.99934 * 19.53808 * 10 8 7 12 12 Si 1.86805 * 120.00125 * 199.53823 * 10 8 7 13 13 H 1.48501 * 109.46848 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47147 * 119.99945 * 12 10 8 15 15 H 1.48498 * 109.47081 * 240.00114 * 12 10 8 16 16 C 1.46501 * 120.00118 * 0.02562 * 7 5 4 17 17 C 1.53000 * 117.49706 * 183.16841 * 16 7 5 18 18 C 1.52997 * 117.49934 * 114.54571 * 16 7 5 19 19 C 1.47147 * 120.00093 * 274.99979 * 3 2 1 20 20 C 1.39897 * 120.16722 * 64.71640 * 19 3 2 21 21 C 1.37864 * 119.84723 * 179.72238 * 20 19 3 22 22 C 1.38413 * 120.18985 * 0.58310 * 21 20 19 23 23 C 1.38506 * 120.33540 * 359.69719 * 22 21 20 24 24 Cl 1.73599 * 119.92348 * 180.02562 * 23 22 21 25 25 C 1.38023 * 120.14805 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.46585 * 60.00227 * 1 2 3 27 27 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47083 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.47370 * 239.99439 * 2 1 3 30 30 H 1.09002 * 109.46939 * 120.00133 * 2 1 3 31 31 H 1.08004 * 119.99633 * 0.02562 * 4 3 2 32 32 H 0.97004 * 120.00309 * 174.93675 * 11 10 8 33 33 H 1.09001 * 115.54728 * 328.87809 * 16 7 5 34 34 H 1.08994 * 117.50152 * 359.97438 * 17 16 7 35 35 H 1.09001 * 117.49235 * 145.02066 * 17 16 7 36 36 H 1.09006 * 117.49767 * 214.97898 * 18 16 7 37 37 H 1.09003 * 117.50027 * 359.97438 * 18 16 7 38 38 H 1.08001 * 120.07257 * 0.02562 * 20 19 3 39 39 H 1.07999 * 119.90407 * 180.29692 * 21 20 19 40 40 H 1.07998 * 119.83097 * 179.71256 * 22 21 20 41 41 H 1.08003 * 120.09038 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3533 2.0232 1.1645 5 6 2.8402 3.4020 1.1646 6 8 2.9567 4.0066 0.1142 7 7 3.1612 4.0033 2.3273 8 6 3.6169 5.2922 2.3273 9 1 4.4491 5.5707 2.9568 10 6 3.0050 6.2464 1.5206 11 7 1.7915 6.0392 1.0637 12 14 3.9097 7.8223 1.0875 13 1 5.2522 7.8127 1.7222 14 1 4.0604 7.9174 -0.3868 15 1 3.1360 8.9892 1.5823 16 6 3.0228 3.2753 3.5911 17 6 3.3321 4.0360 4.8820 18 6 4.3014 2.9674 4.3727 19 6 2.1730 2.1515 -1.2695 20 6 1.0426 2.4495 -2.0380 21 6 1.1813 3.1394 -3.2235 22 6 2.4361 3.5269 -3.6606 23 6 3.5611 3.2309 -2.9087 24 17 5.1297 3.7226 -3.4668 25 6 3.4376 2.5467 -1.7164 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.2505 1.4867 2.0962 32 1 1.3364 6.7343 0.5630 33 1 2.2234 2.5349 3.6219 34 1 3.6390 5.0778 4.7911 35 1 2.7360 3.7961 5.7625 36 1 4.3432 2.0246 4.9182 37 1 5.2458 3.3061 3.9465 38 1 0.0631 2.1441 -1.7009 39 1 0.3088 3.3742 -3.8151 40 1 2.5386 4.0631 -4.5924 41 1 4.3154 2.3166 -1.1307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073051211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:39 Heat of formation + Delta-G solvation = 42.964926 kcal Electronic energy + Delta-G solvation = -25092.627240 eV Core-core repulsion = 21579.302116 eV Total energy + Delta-G solvation = -3513.325124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.25513 -38.20668 -36.37597 -35.80684 -34.94413 -32.81047 -30.99116 -30.78675 -29.98816 -28.99690 -25.54461 -23.66121 -22.41793 -21.94144 -21.72732 -21.23766 -20.01404 -18.20997 -16.97007 -16.09669 -15.86420 -15.02505 -14.89880 -14.71025 -14.39961 -14.01895 -13.88833 -13.44595 -13.22300 -13.11806 -12.80164 -12.63442 -12.41805 -12.22054 -11.64804 -11.60291 -11.22844 -11.00205 -10.95000 -10.90024 -10.86452 -10.80389 -10.67118 -10.57537 -10.21860 -10.15398 -9.98302 -9.76827 -8.90886 -8.63431 -8.27520 -8.05550 -7.42576 -6.94228 -6.12260 -3.81990 1.60138 1.88243 2.28674 2.71267 3.30124 3.40251 3.43417 4.23489 4.26717 4.44777 4.83866 4.95730 5.01620 5.19851 5.32601 5.36956 5.38180 5.49786 5.54231 5.57049 5.69375 5.76238 5.77842 5.95666 5.99382 6.02591 6.04330 6.11172 6.20547 6.26931 6.35169 6.40478 6.46613 6.69386 6.72953 6.83200 6.89633 6.94400 7.01668 7.13519 7.41285 7.60715 8.26154 9.05681 9.20223 9.67074 10.34692 10.94974 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.006673 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.852263 B = 4194.925412 C = 5864.427665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.067 4.067 4 C -0.155 4.155 5 C 0.490 3.510 6 O -0.515 6.515 7 N -0.414 5.414 8 C -0.345 4.345 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.817 5.817 12 Si 0.906 3.094 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.286 1.286 16 C 0.073 3.927 17 C -0.174 4.174 18 C -0.207 4.207 19 C 0.003 3.997 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.034 4.034 24 Cl -0.092 7.092 25 C -0.032 4.032 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -10.679 -2.440 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.070 4.070 4 C -0.176 4.176 5 C 0.281 3.719 6 O -0.394 6.394 7 N -0.133 5.133 8 C -0.472 4.472 9 H 0.095 0.905 10 C -0.134 4.134 11 N -0.450 5.450 12 Si 0.734 3.266 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.213 1.213 16 C -0.033 4.033 17 C -0.212 4.212 18 C -0.246 4.246 19 C 0.003 3.997 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.061 4.061 24 Cl -0.063 7.063 25 C -0.051 4.051 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.398 -10.231 -3.194 10.809 hybrid contribution 0.410 1.091 0.123 1.172 sum -0.988 -9.141 -3.071 9.693 Atomic orbital electron populations 1.21811 0.94966 1.01243 1.02551 1.20502 0.96037 0.92592 1.02415 1.20677 0.99381 0.94932 0.92029 1.23386 1.00368 0.97142 0.96738 1.17725 0.84194 0.85530 0.84483 1.90730 1.54202 1.64981 1.29461 1.42731 1.58283 1.11033 1.01273 1.18859 1.14884 0.84232 1.29211 0.90466 1.25178 0.94224 0.98001 0.95993 1.69797 1.10507 1.33031 1.31621 0.86240 0.79832 0.81595 0.78971 1.19609 1.20485 1.21283 1.21734 0.96730 0.98929 0.85939 1.23070 1.02835 0.98772 0.96530 1.23310 0.96225 0.99478 1.05574 1.18407 0.92331 0.96414 0.92567 1.21145 0.97651 0.99297 0.94458 1.20727 0.96177 0.99649 0.97046 1.20833 0.91436 1.01548 1.00025 1.20566 0.85571 1.02978 0.96947 1.98318 1.27827 1.90820 1.89339 1.20808 0.97348 0.94783 0.92128 0.92322 0.92721 0.92389 0.91248 0.91109 0.86765 0.92621 0.87941 0.87543 0.89822 0.89818 0.89120 0.86326 0.86188 0.86263 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.84 37.16 0.37 -1.35 16 2 C -0.08 -1.00 6.08 -27.88 -0.17 -1.17 16 3 C -0.07 -1.17 4.76 -102.16 -0.49 -1.65 16 4 C -0.15 -3.01 8.94 -37.53 -0.34 -3.35 16 5 C 0.49 12.05 6.77 -13.05 -0.09 11.96 16 6 O -0.51 -14.10 9.86 5.14 0.05 -14.05 16 7 N -0.41 -10.16 2.83 -109.37 -0.31 -10.47 16 8 C -0.35 -9.28 7.98 -15.05 -0.12 -9.40 16 9 H 0.08 2.04 7.18 -52.49 -0.38 1.66 16 10 C 0.08 2.17 4.33 -17.44 -0.08 2.10 16 11 N -0.82 -23.84 11.70 55.51 0.65 -23.19 16 12 Si 0.91 22.15 29.60 -169.99 -5.03 17.12 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.07 1.44 5.75 -67.93 -0.39 1.05 16 17 C -0.17 -3.10 9.79 -26.73 -0.26 -3.37 16 18 C -0.21 -3.49 10.36 -26.73 -0.28 -3.77 16 19 C 0.00 0.06 3.85 -105.07 -0.40 -0.34 16 20 C -0.11 -1.89 9.51 -39.10 -0.37 -2.26 16 21 C -0.12 -1.96 10.03 -39.65 -0.40 -2.36 16 22 C -0.12 -2.09 9.82 -39.42 -0.39 -2.48 16 23 C -0.03 -0.66 6.31 -39.56 -0.25 -0.91 16 24 Cl -0.09 -1.64 28.95 -51.86 -1.50 -3.14 16 25 C -0.03 -0.64 6.73 -39.06 -0.26 -0.90 16 26 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.11 1.90 6.27 -52.48 -0.33 1.57 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.10 1.81 6.57 -51.93 -0.34 1.47 16 34 H 0.11 2.11 6.68 -51.93 -0.35 1.76 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.12 1.86 6.20 -52.49 -0.33 1.53 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.12 2.49 8.05 -52.48 -0.42 2.06 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -31.50 353.40 -10.12 -41.62 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.39 Total: 4.99 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.91 Total: -18.19 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.34 Total: -33.66 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.05 Total: -14.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.50 Total: -3.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.50 -10.12 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073051211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.583 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds