Wall clock time and date at job start Tue Mar 31 2020 12:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47256 * 2 1 4 4 C 1.34980 * 120.00040 * 94.99489 * 3 2 1 5 5 C 1.46223 * 119.99964 * 180.02562 * 4 3 2 6 6 O 1.21754 * 120.00449 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99868 * 180.02562 * 5 4 3 8 8 C 1.36711 * 119.99929 * 179.97438 * 7 5 4 9 9 H 1.07998 * 120.00299 * 222.67584 * 8 7 5 10 10 C 1.39129 * 120.00001 * 42.95078 * 8 7 5 11 11 N 1.31315 * 119.99934 * 19.53808 * 10 8 7 12 12 Si 1.86805 * 120.00125 * 199.53823 * 10 8 7 13 13 H 1.48501 * 109.46848 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47147 * 119.99945 * 12 10 8 15 15 H 1.48498 * 109.47081 * 240.00114 * 12 10 8 16 16 C 1.46501 * 120.00118 * 0.02562 * 7 5 4 17 17 C 1.53000 * 117.49706 * 183.16841 * 16 7 5 18 18 C 1.52997 * 117.49934 * 114.54571 * 16 7 5 19 19 C 1.47147 * 120.00093 * 274.99979 * 3 2 1 20 20 C 1.39897 * 120.16722 * 64.71640 * 19 3 2 21 21 C 1.37864 * 119.84723 * 179.72238 * 20 19 3 22 22 C 1.38413 * 120.18985 * 0.58310 * 21 20 19 23 23 C 1.38506 * 120.33540 * 359.69719 * 22 21 20 24 24 Cl 1.73599 * 119.92348 * 180.02562 * 23 22 21 25 25 C 1.38023 * 120.14805 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.46585 * 60.00227 * 1 2 3 27 27 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47083 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.47370 * 239.99439 * 2 1 3 30 30 H 1.09002 * 109.46939 * 120.00133 * 2 1 3 31 31 H 1.08004 * 119.99633 * 0.02562 * 4 3 2 32 32 H 0.97004 * 120.00309 * 174.93675 * 11 10 8 33 33 H 1.09001 * 115.54728 * 328.87809 * 16 7 5 34 34 H 1.08994 * 117.50152 * 359.97438 * 17 16 7 35 35 H 1.09001 * 117.49235 * 145.02066 * 17 16 7 36 36 H 1.09006 * 117.49767 * 214.97898 * 18 16 7 37 37 H 1.09003 * 117.50027 * 359.97438 * 18 16 7 38 38 H 1.08001 * 120.07257 * 0.02562 * 20 19 3 39 39 H 1.07999 * 119.90407 * 180.29692 * 21 20 19 40 40 H 1.07998 * 119.83097 * 179.71256 * 22 21 20 41 41 H 1.08003 * 120.09038 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3533 2.0232 1.1645 5 6 2.8402 3.4020 1.1646 6 8 2.9567 4.0066 0.1142 7 7 3.1612 4.0033 2.3273 8 6 3.6169 5.2922 2.3273 9 1 4.4491 5.5707 2.9568 10 6 3.0050 6.2464 1.5206 11 7 1.7915 6.0392 1.0637 12 14 3.9097 7.8223 1.0875 13 1 5.2522 7.8127 1.7222 14 1 4.0604 7.9174 -0.3868 15 1 3.1360 8.9892 1.5823 16 6 3.0228 3.2753 3.5911 17 6 3.3321 4.0360 4.8820 18 6 4.3014 2.9674 4.3727 19 6 2.1730 2.1515 -1.2695 20 6 1.0426 2.4495 -2.0380 21 6 1.1813 3.1394 -3.2235 22 6 2.4361 3.5269 -3.6606 23 6 3.5611 3.2309 -2.9087 24 17 5.1297 3.7226 -3.4668 25 6 3.4376 2.5467 -1.7164 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.2505 1.4867 2.0962 32 1 1.3364 6.7343 0.5630 33 1 2.2234 2.5349 3.6219 34 1 3.6390 5.0778 4.7911 35 1 2.7360 3.7961 5.7625 36 1 4.3432 2.0246 4.9182 37 1 5.2458 3.3061 3.9465 38 1 0.0631 2.1441 -1.7009 39 1 0.3088 3.3742 -3.8151 40 1 2.5386 4.0631 -4.5924 41 1 4.3154 2.3166 -1.1307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073051211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:38 Heat of formation + Delta-G solvation = 27.536822 kcal Electronic energy + Delta-G solvation = -25093.296253 eV Core-core repulsion = 21579.302116 eV Total energy + Delta-G solvation = -3513.994137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79675 -39.76970 -37.86747 -37.31917 -36.29442 -34.67981 -32.82941 -32.07543 -31.34972 -30.47286 -27.30921 -25.11044 -23.71457 -23.33125 -23.13383 -22.78085 -21.65662 -19.70008 -18.60150 -17.83725 -17.31269 -16.76838 -16.37734 -16.30531 -15.83537 -15.56758 -15.20548 -15.00846 -14.66208 -14.42658 -14.38720 -14.07387 -13.89199 -13.39780 -13.36351 -12.95957 -12.85225 -12.74363 -12.67256 -12.39494 -12.28296 -12.23327 -12.10923 -11.98798 -11.82931 -11.62259 -11.46784 -11.20932 -10.73545 -10.26752 -9.84244 -9.51100 -9.06461 -8.78095 -8.17331 -5.88850 0.17394 0.44454 0.86703 1.26512 1.31735 1.40610 1.45505 2.30886 2.82605 2.88466 3.13079 3.21196 3.54796 3.71979 3.98428 4.01363 4.12243 4.16829 4.27538 4.30381 4.42017 4.45379 4.55376 4.56554 4.63262 4.81663 4.88501 4.89736 5.01106 5.05297 5.07279 5.15800 5.28650 5.30805 5.40522 5.45903 5.46786 5.50743 5.55541 5.65403 5.74840 6.03543 6.24020 7.08091 7.32167 7.78899 8.49724 8.89351 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.006673 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.852263 B = 4194.925412 C = 5864.427665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.037 4.037 4 C -0.186 4.186 5 C 0.481 3.519 6 O -0.554 6.554 7 N -0.437 5.437 8 C -0.351 4.351 9 H 0.071 0.929 10 C 0.035 3.965 11 N -0.853 5.853 12 Si 0.954 3.046 13 H -0.263 1.263 14 H -0.298 1.298 15 H -0.273 1.273 16 C 0.046 3.954 17 C -0.172 4.172 18 C -0.181 4.181 19 C -0.018 4.018 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.052 4.052 24 Cl -0.090 7.090 25 C -0.052 4.052 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.256 0.744 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.140 0.860 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -12.829 -1.943 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.040 4.040 4 C -0.207 4.207 5 C 0.272 3.728 6 O -0.435 6.435 7 N -0.157 5.157 8 C -0.479 4.479 9 H 0.089 0.911 10 C -0.173 4.173 11 N -0.488 5.488 12 Si 0.780 3.220 13 H -0.187 1.187 14 H -0.226 1.226 15 H -0.199 1.199 16 C -0.059 4.059 17 C -0.210 4.210 18 C -0.220 4.220 19 C -0.018 4.018 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.078 4.078 24 Cl -0.061 7.061 25 C -0.071 4.071 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.158 0.842 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.471 -12.392 -2.658 12.912 hybrid contribution 0.784 1.641 -0.108 1.821 sum -1.688 -10.751 -2.766 11.229 Atomic orbital electron populations 1.21794 0.93507 1.02997 1.01986 1.20640 0.97051 0.89447 1.04161 1.21225 0.95581 0.96595 0.90601 1.23238 1.03513 0.95061 0.98872 1.18580 0.82958 0.87231 0.83998 1.90696 1.55489 1.66524 1.30834 1.42904 1.58851 1.10670 1.03226 1.18948 1.14584 0.85613 1.28748 0.91123 1.25791 0.94722 1.00438 0.96315 1.69893 1.11715 1.33616 1.33563 0.85500 0.79542 0.79636 0.77302 1.18706 1.22562 1.19911 1.22021 0.99320 1.00019 0.84584 1.23104 1.03495 0.97570 0.96797 1.23305 0.94051 1.00703 1.03936 1.18751 0.92445 0.97036 0.93581 1.21474 0.98032 0.99157 0.94648 1.21181 0.97015 0.98237 0.96910 1.21178 0.91294 1.01444 1.00686 1.20819 0.86395 1.03338 0.97284 1.98306 1.27786 1.90794 1.89214 1.20754 0.97373 0.96227 0.92728 0.92769 0.89836 0.93101 0.89970 0.88926 0.83860 0.93424 0.85654 0.90330 0.86488 0.85733 0.91163 0.84335 0.82721 0.84170 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.84 71.98 0.71 -2.14 16 2 C -0.08 -1.70 6.08 29.85 0.18 -1.52 16 3 C -0.04 -1.24 4.76 -18.27 -0.09 -1.33 16 4 C -0.19 -7.08 8.94 23.60 0.21 -6.87 16 5 C 0.48 24.05 6.77 86.32 0.58 24.63 16 6 O -0.55 -31.36 9.86 -4.52 -0.04 -31.40 16 7 N -0.44 -21.78 2.83 -618.13 -1.75 -23.53 16 8 C -0.35 -19.45 7.98 84.15 0.67 -18.78 16 9 H 0.07 3.87 7.18 -2.91 -0.02 3.85 16 10 C 0.04 2.01 4.33 84.98 0.37 2.38 16 11 N -0.85 -51.46 11.70 21.69 0.25 -51.21 16 12 Si 0.95 46.98 29.60 68.60 2.03 49.01 16 13 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 C 0.05 1.75 5.75 44.99 0.26 2.01 16 17 C -0.17 -5.89 9.79 30.59 0.30 -5.59 16 18 C -0.18 -5.75 10.36 30.59 0.32 -5.43 16 19 C -0.02 -0.67 3.85 -20.15 -0.08 -0.74 16 20 C -0.12 -3.89 9.51 22.58 0.21 -3.68 16 21 C -0.12 -3.65 10.03 22.22 0.22 -3.43 16 22 C -0.13 -4.37 9.82 22.38 0.22 -4.15 16 23 C -0.05 -2.02 6.31 22.28 0.14 -1.88 16 24 Cl -0.09 -3.26 28.95 -2.72 -0.08 -3.34 16 25 C -0.05 -2.13 6.73 22.60 0.15 -1.97 16 26 H 0.05 1.10 6.01 -2.39 -0.01 1.09 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 31 H 0.14 4.45 6.27 -2.91 -0.02 4.44 16 32 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 33 H 0.13 4.14 6.57 -2.39 -0.02 4.12 16 34 H 0.08 3.14 6.68 -2.39 -0.02 3.12 16 35 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.14 4.03 6.20 -2.91 -0.02 4.01 16 39 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 40 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.10 4.41 8.05 -2.91 -0.02 4.38 16 Total: -1.00 -72.02 353.40 5.84 -66.19 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 1.04 Total: 22.80 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.39 Total: -28.51 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.50 Total: -74.74 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.04 Total: -31.40 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.08 Total: -3.34 kcal Total: -72.02 5.84 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073051211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.723 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds