Wall clock time and date at job start Tue Mar 31 2020 12:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 C 1.53003 * 109.46644 * 119.99931 * 2 1 3 5 5 C 1.50700 * 109.47129 * 239.99312 * 2 1 3 6 6 N 1.29367 * 124.66178 * 59.70808 * 5 2 1 7 7 C 1.30956 * 117.49526 * 179.76252 * 6 5 2 8 8 C 1.37152 * 113.82893 * 0.51489 * 7 6 5 9 9 C 1.41646 * 126.18958 * 179.69982 * 8 7 6 10 10 C 1.35717 * 120.00340 * 0.03473 * 9 8 7 11 11 C 1.41341 * 119.99940 * 179.97438 * 10 9 8 12 12 O 1.21845 * 120.00294 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99980 * 179.97438 * 11 10 9 14 14 C 1.36770 * 120.00254 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00430 * 327.49159 * 14 13 11 16 16 C 1.39067 * 120.00075 * 147.48855 * 14 13 11 17 17 N 1.31360 * 120.00058 * 153.06248 * 16 14 13 18 18 Si 1.86800 * 119.99701 * 333.06653 * 16 14 13 19 19 H 1.48501 * 109.46969 * 95.07688 * 18 16 14 20 20 H 1.48505 * 109.46791 * 215.07600 * 18 16 14 21 21 H 1.48498 * 109.47072 * 335.07403 * 18 16 14 22 22 C 1.46499 * 119.99949 * 0.02562 * 13 11 10 23 23 C 1.47210 * 109.47374 * 93.52875 * 22 13 11 24 24 N 9.15062 * 112.61141 * 265.07868 * 2 1 3 25 25 S 1.70908 * 124.67118 * 240.00214 * 5 2 1 26 26 H 1.09003 * 109.46767 * 60.00237 * 1 2 3 27 27 H 1.09001 * 109.47277 * 300.00080 * 1 2 3 28 28 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47006 * 59.99754 * 3 2 1 30 30 H 1.09004 * 109.47083 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47002 * 299.99619 * 3 2 1 32 32 H 1.09001 * 109.47383 * 60.00067 * 4 2 1 33 33 H 1.09004 * 109.46663 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47263 * 299.99436 * 4 2 1 35 35 H 1.07994 * 123.08292 * 180.22080 * 7 6 5 36 36 H 1.08000 * 119.99673 * 180.02562 * 9 8 7 37 37 H 1.08000 * 119.99987 * 0.02562 * 10 9 8 38 38 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.47137 * 213.52694 * 22 13 11 40 40 H 1.08994 * 109.47212 * 333.52711 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7106 -1.2304 6 7 1.7716 -0.3513 -2.4455 7 6 2.2863 -1.0695 -3.4120 8 6 3.0367 -2.1309 -2.9744 9 6 3.7043 -3.0763 -3.7910 10 6 3.6333 -2.9758 -5.1426 11 6 4.3000 -3.9189 -5.9573 12 8 4.9381 -4.8224 -5.4463 13 7 4.2292 -3.8194 -7.2995 14 6 4.8747 -4.7317 -8.0879 15 1 5.8027 -5.1725 -7.7550 16 6 4.3361 -5.0918 -9.3185 17 7 5.1236 -5.5100 -10.2831 18 14 2.4927 -4.9807 -9.5996 19 1 2.1670 -3.6803 -10.2385 20 1 2.0596 -6.0903 -10.4865 21 1 1.7864 -5.0832 -8.2974 22 6 3.4615 -2.7334 -7.9140 23 6 4.3564 -1.5995 -8.1978 24 7 5.0482 -0.7247 -8.4161 25 16 3.0190 -2.1060 -1.2125 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 -1.7489 1.2493 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 2.1301 -0.8492 -4.4576 36 1 4.2700 -3.8771 -3.3380 37 1 3.0681 -2.1747 -5.5956 38 1 4.7481 -5.7608 -11.1415 39 1 3.0147 -3.0853 -8.8439 40 1 2.6746 -2.4132 -7.2312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079860464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:40 Heat of formation + Delta-G solvation = 66.648991 kcal Electronic energy + Delta-G solvation = -23323.722048 eV Core-core repulsion = 19845.760400 eV Total energy + Delta-G solvation = -3477.961648 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03338 -39.32934 -37.11136 -36.34836 -34.90645 -33.81050 -32.39588 -28.91259 -27.89567 -27.77473 -27.56724 -26.46981 -24.96194 -22.60861 -21.10045 -19.31494 -18.72787 -18.33440 -17.55255 -16.84801 -16.58758 -15.79225 -15.39792 -15.10939 -14.62066 -14.28017 -14.15330 -14.04033 -13.85408 -13.69577 -13.40803 -12.97392 -12.65129 -12.58533 -12.56240 -12.44529 -12.32665 -12.01100 -11.92582 -11.78546 -11.54835 -11.41724 -11.31595 -11.06603 -11.04697 -10.54669 -10.54620 -10.10243 -9.65465 -9.40200 -9.18194 -8.82623 -8.25616 -8.01581 -6.71519 -4.13741 0.06397 1.22781 1.67328 1.91080 2.79825 2.90911 2.99645 3.05347 3.09356 3.21975 3.83137 3.88085 3.98627 4.26758 4.43890 4.48165 4.56321 4.71413 4.90041 4.99131 5.11123 5.13767 5.19868 5.23222 5.28567 5.42029 5.44020 5.51942 5.56664 5.59978 5.62891 5.74132 5.82114 5.94945 5.97342 6.17759 6.36689 6.52262 7.22214 7.67565 7.92523 8.00567 8.19736 8.68205 8.98513 9.46123 10.38865 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.002911 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.403918 B = 9617.537941 C = 9883.233272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.012 3.988 3 C -0.134 4.134 4 C -0.155 4.155 5 C 0.035 3.965 6 N -0.464 5.464 7 C 0.044 3.956 8 C -0.192 4.192 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.485 3.515 12 O -0.561 6.561 13 N -0.443 5.443 14 C -0.316 4.316 15 H 0.117 0.883 16 C 0.061 3.939 17 N -0.832 5.832 18 Si 0.859 3.141 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.252 1.252 22 C 0.175 3.825 23 C 0.206 3.794 24 N -0.434 5.434 25 S 0.150 5.850 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.178 0.822 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.281 0.719 39 H 0.109 0.891 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 9.792 18.618 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 C -0.193 4.193 4 C -0.213 4.213 5 C -0.240 4.240 6 N -0.176 5.176 7 C -0.111 4.111 8 C -0.313 4.313 9 C -0.060 4.060 10 C -0.188 4.188 11 C 0.279 3.721 12 O -0.444 6.444 13 N -0.164 5.164 14 C -0.443 4.443 15 H 0.134 0.866 16 C -0.148 4.148 17 N -0.466 5.466 18 Si 0.684 3.316 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.175 1.175 22 C 0.048 3.952 23 C -0.113 4.113 24 N -0.112 5.112 25 S 0.410 5.590 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.195 0.805 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.994 10.368 19.109 23.928 hybrid contribution -1.265 -0.193 -1.553 2.012 sum -11.260 10.175 17.556 23.206 Atomic orbital electron populations 1.21836 0.92350 1.02359 1.02679 1.19197 0.96520 0.95115 0.88353 1.21840 1.01197 0.93548 1.02682 1.22037 1.01773 1.00748 0.96743 1.27101 1.01702 0.98554 0.96604 1.65812 1.22892 1.30402 0.98518 1.22511 0.97092 0.91814 0.99664 1.23923 1.07707 1.03046 0.96588 1.20258 0.96723 0.96327 0.92695 1.22312 1.02048 1.00033 0.94384 1.16696 0.86158 0.87253 0.82004 1.90741 1.44746 1.36603 1.72327 1.43669 1.45823 1.21796 1.05072 1.19179 1.06650 1.19907 0.98518 0.86595 1.25408 0.98584 0.95995 0.94848 1.69784 1.35825 1.38369 1.02583 0.87233 0.86131 0.78244 0.79948 1.19396 1.20262 1.17537 1.19613 0.91199 0.82649 1.01710 1.29817 0.94637 0.93827 0.93042 1.81079 1.08570 1.12588 1.09012 1.83843 1.46668 1.26078 1.02363 0.91434 0.91764 0.92498 0.91742 0.92503 0.91446 0.91768 0.91778 0.90743 0.80507 0.84378 0.86342 0.90877 0.87342 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.45 37.16 0.31 -0.70 16 2 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 3 C -0.13 -1.04 8.45 37.16 0.31 -0.73 16 4 C -0.15 -1.01 7.53 37.16 0.28 -0.73 16 5 C 0.04 0.39 5.77 -13.32 -0.08 0.32 16 6 N -0.46 -6.01 10.47 -11.16 -0.12 -6.13 16 7 C 0.04 0.58 10.84 -18.32 -0.20 0.38 16 8 C -0.19 -2.61 6.32 -38.68 -0.24 -2.85 16 9 C -0.04 -0.57 9.49 -39.18 -0.37 -0.94 16 10 C -0.16 -2.72 8.54 -39.30 -0.34 -3.06 16 11 C 0.48 10.57 7.39 -15.08 -0.11 10.46 16 12 O -0.56 -14.33 15.91 5.06 0.08 -14.25 16 13 N -0.44 -9.87 2.21 -121.27 -0.27 -10.14 16 14 C -0.32 -8.26 9.39 -15.04 -0.14 -8.40 16 15 H 0.12 3.46 7.80 -52.49 -0.41 3.05 16 16 C 0.06 1.54 5.27 -17.45 -0.09 1.45 16 17 N -0.83 -22.26 13.95 55.50 0.77 -21.48 16 18 Si 0.86 17.67 25.17 -169.99 -4.28 13.40 16 19 H -0.27 -4.97 6.60 56.52 0.37 -4.59 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.25 -4.98 7.11 56.52 0.40 -4.58 16 22 C 0.18 3.13 4.64 -6.83 -0.03 3.10 16 23 C 0.21 3.97 15.74 -20.74 -0.33 3.64 16 24 N -0.43 -9.02 18.54 42.18 0.78 -8.23 16 25 S 0.15 1.68 21.49 -107.50 -2.31 -0.63 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.42 7.91 -51.93 -0.41 0.01 16 33 H 0.06 0.42 7.91 -51.93 -0.41 0.01 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.18 2.01 6.89 -52.49 -0.36 1.65 16 36 H 0.14 2.26 7.46 -52.49 -0.39 1.87 16 37 H 0.12 1.60 4.57 -52.49 -0.24 1.36 16 38 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.11 1.98 2.82 -51.93 -0.15 1.83 16 40 H 0.12 1.51 5.89 -51.93 -0.31 1.20 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -31.08 353.91 -5.98 -37.06 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.80 Total: 3.19 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.18 Total: 1.88 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 1.17 Total: -45.98 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -4.28 Total: 13.40 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.31 Total: -0.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.08 -5.98 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.707 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds