Wall clock time and date at job start Tue Mar 31 2020 12:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38114 * 120.01952 * 2 1 4 4 C 1.38473 * 120.04157 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.95290 * 179.97438 * 4 3 2 6 6 C 1.38516 * 120.09154 * 0.02562 * 4 3 2 7 7 C 1.38075 * 120.04340 * 359.73494 * 6 4 3 8 8 C 1.38839 * 120.02561 * 180.02562 * 2 1 3 9 9 N 1.40123 * 120.04495 * 359.95622 * 8 2 1 10 10 C 1.36116 * 124.93233 * 132.89378 * 9 8 2 11 11 C 1.35743 * 107.07707 * 180.26226 * 10 9 8 12 12 O 1.36083 * 127.25992 * 179.71777 * 11 10 9 13 13 C 1.41869 * 105.48160 * 359.61015 * 11 10 9 14 14 C 1.47358 * 126.45424 * 180.11207 * 13 11 10 15 15 O 1.21629 * 120.00263 * 5.42525 * 14 13 11 16 16 N 1.34779 * 119.99848 * 185.42172 * 14 13 11 17 17 C 1.46497 * 119.99860 * 5.69018 * 16 14 13 18 18 C 1.36911 * 120.00089 * 185.68664 * 16 14 13 19 19 H 1.08000 * 119.99839 * 329.39186 * 18 16 14 20 20 C 1.39013 * 119.99996 * 149.38978 * 18 16 14 21 21 N 1.31388 * 119.99937 * 163.90373 * 20 18 16 22 22 Si 1.86796 * 120.00020 * 343.89903 * 20 18 16 23 23 H 1.48505 * 109.47020 * 90.45256 * 22 20 18 24 24 H 1.48501 * 109.47189 * 210.45132 * 22 20 18 25 25 H 1.48500 * 109.47273 * 330.45609 * 22 20 18 26 26 N 1.28460 * 124.92387 * 312.89962 * 9 8 2 27 27 H 1.09000 * 109.46878 * 272.37332 * 1 2 3 28 28 H 1.08991 * 109.47380 * 32.37289 * 1 2 3 29 29 H 1.09002 * 109.46866 * 152.37877 * 1 2 3 30 30 H 1.08003 * 119.97880 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.97760 * 180.02562 * 6 4 3 32 32 H 1.07999 * 120.02165 * 180.26133 * 7 6 4 33 33 H 1.08004 * 126.46082 * 0.02562 * 10 9 8 34 34 H 0.96706 * 113.99453 * 90.03230 * 12 11 10 35 35 H 1.08997 * 109.47848 * 54.71187 * 17 16 14 36 36 H 1.09004 * 109.47461 * 174.71120 * 17 16 14 37 37 H 1.09000 * 109.47300 * 294.70968 * 17 16 14 38 38 H 0.96998 * 120.00024 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1959 0.0000 4 6 3.5827 1.1964 -0.0005 5 9 4.2568 2.3672 -0.0011 6 6 4.2777 -0.0018 -0.0016 7 6 3.5906 -1.1995 0.0034 8 6 2.2017 -1.2021 -0.0005 9 7 1.5026 -2.4164 -0.0002 10 6 1.7715 -3.4708 -0.8179 11 6 0.8777 -4.4470 -0.5165 12 8 0.7748 -5.6760 -1.0918 13 6 0.0753 -3.9170 0.5264 14 6 -1.0425 -4.5979 1.2034 15 8 -1.2908 -5.7608 0.9478 16 7 -1.7898 -3.9320 2.1060 17 6 -1.5721 -2.4997 2.3233 18 6 -2.7524 -4.5941 2.8198 19 1 -3.2631 -5.4394 2.3827 20 6 -3.0722 -4.1785 4.1072 21 7 -4.1856 -4.5879 4.6721 22 14 -1.9190 -3.0382 5.0341 23 1 -2.2945 -1.6272 4.7630 24 1 -2.0226 -3.3068 6.4910 25 1 -0.5233 -3.2740 4.5853 26 7 0.5149 -2.6961 0.7720 27 1 -0.3633 0.0426 1.0268 28 1 -0.3633 0.8679 -0.5502 29 1 -0.3633 -0.9106 -0.4765 30 1 1.6580 2.1312 0.0004 31 1 5.3577 0.0008 -0.0016 32 1 4.1328 -2.1335 0.0068 33 1 2.5469 -3.5199 -1.5681 34 1 1.3047 -6.3589 -0.6582 35 1 -1.6503 -1.9719 1.3729 36 1 -2.3246 -2.1183 3.0136 37 1 -0.5794 -2.3429 2.7453 38 1 -4.4086 -4.2982 5.5706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080476743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:25 Heat of formation + Delta-G solvation = 21.643083 kcal Electronic energy + Delta-G solvation = -26694.308451 eV Core-core repulsion = 22648.182024 eV Total energy + Delta-G solvation = -4046.126427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.31389 -42.76323 -39.58713 -38.30309 -36.94909 -34.76775 -33.38551 -33.10509 -31.99968 -29.96577 -29.25108 -27.43964 -26.45203 -25.47120 -23.70769 -22.80772 -21.53591 -21.13996 -19.29311 -18.29459 -17.62278 -17.22885 -17.13059 -17.03455 -16.16692 -16.01899 -15.58079 -15.43760 -14.79447 -14.32522 -14.18437 -13.94001 -13.89433 -13.74149 -13.66321 -13.46322 -13.21010 -12.61533 -12.52323 -12.28058 -12.21631 -12.03128 -11.83940 -11.53649 -11.35364 -10.54960 -10.29943 -10.07296 -9.85706 -9.63206 -9.41421 -9.22386 -8.92813 -8.71291 -8.34864 -7.78949 -6.41520 -3.94033 0.39126 0.68379 1.87774 2.18569 2.34693 3.00239 3.04974 3.22796 3.25631 3.74735 4.09534 4.10803 4.21794 4.24574 4.26413 4.57779 4.60443 4.73105 4.79650 5.03690 5.16575 5.19225 5.23454 5.32025 5.50740 5.51495 5.58539 5.63854 5.82079 5.90614 5.98388 6.02654 6.22452 6.24143 6.36691 6.47562 6.91917 7.50433 7.90228 8.00891 8.22249 8.51036 8.91517 9.28607 9.75070 10.69779 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.004449 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.670145 B = 6291.849916 C = 7715.273247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.143 4.143 4 C 0.110 3.890 5 F -0.135 7.135 6 C -0.146 4.146 7 C -0.079 4.079 8 C 0.125 3.875 9 N -0.247 5.247 10 C -0.046 4.046 11 C 0.048 3.952 12 O -0.453 6.453 13 C 0.008 3.992 14 C 0.530 3.470 15 O -0.553 6.553 16 N -0.446 5.446 17 C 0.061 3.939 18 C -0.310 4.310 19 H 0.115 0.885 20 C 0.055 3.945 21 N -0.862 5.862 22 Si 0.888 3.112 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.263 1.263 26 N -0.253 5.253 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.183 0.817 34 H 0.387 0.613 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.599 12.754 -9.607 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.162 4.162 4 C 0.090 3.910 5 F -0.113 7.113 6 C -0.165 4.165 7 C -0.099 4.099 8 C 0.035 3.965 9 N -0.031 5.031 10 C -0.186 4.186 11 C -0.008 4.008 12 O -0.258 6.258 13 C -0.155 4.155 14 C 0.317 3.683 15 O -0.433 6.433 16 N -0.166 5.166 17 C -0.082 4.082 18 C -0.438 4.438 19 H 0.133 0.867 20 C -0.151 4.151 21 N -0.499 5.499 22 Si 0.716 3.284 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.188 1.188 26 N -0.086 5.086 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.200 0.800 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.797 13.432 -9.300 23.431 hybrid contribution 1.242 -0.021 0.445 1.320 sum 18.039 13.410 -8.855 24.159 Atomic orbital electron populations 1.20940 0.88932 1.03556 1.04154 1.19745 0.97553 0.90260 0.95722 1.20944 0.92142 0.98983 1.04140 1.17733 0.90071 0.81422 1.01781 1.91527 1.80261 1.45855 1.93689 1.20944 1.01171 0.90223 1.04196 1.20894 0.91409 0.99083 0.98535 1.17322 0.90230 0.82507 1.06426 1.42133 1.24212 1.10668 1.26111 1.22832 1.04303 0.89415 1.02040 1.18136 0.96928 0.88921 0.96791 1.84874 1.71146 1.15304 1.54477 1.23250 1.01552 0.91583 0.99132 1.16581 0.81909 0.85650 0.84199 1.90685 1.70479 1.16111 1.66042 1.43550 1.31261 1.06588 1.35179 1.22183 1.01033 0.83373 1.01637 1.19264 1.12508 1.15611 0.96403 0.86750 1.25354 0.95936 0.97505 0.96300 1.69684 1.20929 1.43762 1.15546 0.86930 0.82435 0.80130 0.78908 1.20144 1.21691 1.18786 1.74158 1.02108 1.16668 1.15654 0.89180 0.90834 0.90560 0.83555 0.83624 0.83845 0.80010 0.75888 0.92312 0.90756 0.92265 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.05 36.01 0.33 -1.00 16 2 C -0.03 -0.33 5.89 -104.44 -0.62 -0.95 16 3 C -0.14 -1.27 9.68 -39.54 -0.38 -1.66 16 4 C 0.11 0.96 7.30 -39.39 -0.29 0.68 16 5 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 6 C -0.15 -1.13 10.02 -39.54 -0.40 -1.52 16 7 C -0.08 -0.69 9.60 -39.40 -0.38 -1.07 16 8 C 0.13 1.44 6.13 -83.60 -0.51 0.93 16 9 N -0.25 -3.52 2.92 -10.40 -0.03 -3.55 16 10 C -0.05 -0.61 11.10 -16.54 -0.18 -0.80 16 11 C 0.05 0.82 7.35 -39.09 -0.29 0.54 16 12 O -0.45 -7.52 13.21 -21.93 -0.29 -7.81 16 13 C 0.01 0.16 6.84 -82.67 -0.57 -0.41 16 14 C 0.53 13.38 7.61 -12.55 -0.10 13.29 16 15 O -0.55 -15.62 16.30 3.33 0.05 -15.57 16 16 N -0.45 -11.45 2.74 -123.45 -0.34 -11.79 16 17 C 0.06 1.32 6.71 59.85 0.40 1.72 16 18 C -0.31 -8.99 9.60 -15.00 -0.14 -9.13 16 19 H 0.11 3.69 7.72 -52.49 -0.40 3.29 16 20 C 0.06 1.53 5.28 -17.45 -0.09 1.44 16 21 N -0.86 -25.01 13.96 55.50 0.77 -24.23 16 22 Si 0.89 20.90 24.27 -169.99 -4.13 16.77 16 23 H -0.27 -5.97 6.58 56.52 0.37 -5.60 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.21 6.55 56.52 0.37 -5.84 16 26 N -0.25 -4.48 6.67 33.45 0.22 -4.26 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.08 1.02 6.67 -51.93 -0.35 0.67 16 30 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 0.99 8.00 -52.49 -0.42 0.57 16 33 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.39 4.71 9.07 45.56 0.41 5.12 16 35 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 36 H 0.07 1.62 4.37 -51.93 -0.23 1.40 16 37 H 0.06 1.23 5.99 -51.93 -0.31 0.92 16 38 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -34.76 327.69 -4.96 -39.72 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.99 Total: 4.91 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.21 Total: 2.07 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.63 Total: -43.82 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.24 Total: -23.38 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.13 Total: 16.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.76 -4.96 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080476743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.362 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds