Wall clock time and date at job start Tue Mar 31 2020 11:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99954 * 2 1 4 4 H 1.48494 * 109.46851 * 239.99802 * 3 2 1 5 5 H 1.48503 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47100 * 119.99755 * 3 2 1 7 7 C 1.37878 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00075 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47071 * 184.77383 * 9 7 2 11 11 C 1.46906 * 111.00237 * 284.10221 * 10 9 7 12 12 C 1.50703 * 109.47094 * 169.99877 * 11 10 9 13 13 N 1.30924 * 126.40223 * 89.99601 * 12 11 10 14 14 C 1.35390 * 105.57988 * 180.02562 * 13 12 11 15 15 C 1.47733 * 126.45168 * 180.02562 * 14 13 12 16 16 C 1.34860 * 125.27226 * 179.69550 * 15 14 13 17 17 C 1.37821 * 114.71973 * 179.79027 * 16 15 14 18 18 C 1.33715 * 115.07432 * 0.50681 * 17 16 15 19 19 S 1.75860 * 109.74553 * 359.72674 * 18 17 16 20 20 N 1.31037 * 107.10214 * 0.02562 * 14 13 12 21 21 O 1.21295 * 110.04087 * 0.02562 * 20 14 13 22 22 C 1.46901 * 111.00266 * 160.14515 * 10 9 7 23 23 C 1.52998 * 109.46958 * 287.78821 * 22 10 9 24 24 C 1.53001 * 117.49517 * 245.45403 * 23 22 10 25 25 C 1.53006 * 117.49569 * 176.79857 * 23 22 10 26 26 H 0.96999 * 120.00200 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47169 * 64.78020 * 9 7 2 28 28 H 1.08991 * 109.47115 * 304.77842 * 9 7 2 29 29 H 1.08994 * 109.47037 * 50.00065 * 11 10 9 30 30 H 1.08995 * 109.46845 * 289.99975 * 11 10 9 31 31 H 1.08001 * 122.63955 * 359.97438 * 16 15 14 32 32 H 1.08001 * 122.46052 * 180.22799 * 17 16 15 33 33 H 1.07999 * 125.12898 * 179.72581 * 18 17 16 34 34 H 1.08999 * 109.46659 * 47.78396 * 22 10 9 35 35 H 1.08997 * 109.47192 * 167.78075 * 22 10 9 36 36 H 1.08995 * 115.55487 * 31.13095 * 23 22 10 37 37 H 1.09002 * 117.50371 * 0.02562 * 24 23 22 38 38 H 1.09000 * 117.49665 * 145.02229 * 24 23 22 39 39 H 1.08998 * 117.49989 * 214.97474 * 25 23 22 40 40 H 1.08998 * 117.49809 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2015 -3.6132 0.1164 11 6 2.8921 -3.8509 -1.1582 12 6 4.0228 -4.8238 -0.9431 13 7 3.9538 -6.1279 -1.0358 14 6 5.2008 -6.5784 -0.7617 15 6 5.6392 -7.9890 -0.7389 16 6 6.8910 -8.4111 -0.4680 17 6 7.0581 -9.7788 -0.5020 18 6 5.9592 -10.4764 -0.8079 19 16 4.6111 -9.3776 -1.0684 20 7 5.9457 -5.5277 -0.5204 21 8 5.2831 -4.5166 -0.6202 22 6 1.5293 -4.8320 0.5861 23 6 1.1736 -4.6800 2.0664 24 6 1.8748 -5.6082 3.0603 25 6 0.3959 -5.8203 2.7268 26 1 -0.4850 0.8400 0.0004 27 1 0.6905 -2.5951 -0.9294 28 1 0.5615 -2.5205 0.8443 29 1 3.2900 -2.9094 -1.5368 30 1 2.1889 -4.2649 -1.8807 31 1 7.6984 -7.7312 -0.2393 32 1 8.0079 -10.2519 -0.3009 33 1 5.9073 -11.5525 -0.8837 34 1 0.6188 -4.9905 0.0081 35 1 2.1942 -5.6861 0.4580 36 1 0.9537 -3.6644 2.3952 37 1 2.5898 -6.3268 2.6596 38 1 2.1159 -5.2032 4.0431 39 1 -0.3352 -5.5549 3.4903 40 1 0.1374 -6.6785 2.1065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:48 Heat of formation + Delta-G solvation = 121.605072 kcal Electronic energy + Delta-G solvation = -23812.624269 eV Core-core repulsion = 20337.045695 eV Total energy + Delta-G solvation = -3475.578574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.62206 -39.47084 -38.93824 -37.33196 -36.73954 -34.80205 -33.72531 -30.64588 -29.59827 -29.13892 -26.25372 -25.94997 -24.69405 -23.57556 -23.24222 -22.62984 -21.05133 -19.96155 -19.43145 -19.25085 -18.50438 -17.72064 -16.97771 -16.73384 -16.65205 -16.33972 -15.77313 -15.24406 -14.79393 -14.70904 -14.48123 -14.31220 -13.90592 -13.78361 -13.68644 -13.33668 -13.27929 -13.00107 -12.87276 -12.60959 -12.52329 -12.42435 -12.30018 -12.24734 -11.84956 -11.78531 -11.50341 -11.33322 -11.11992 -10.87196 -10.53442 -9.67792 -9.55962 -9.19190 -8.14993 -6.23848 -0.61878 0.12178 0.38331 0.94857 1.14101 1.47150 1.48736 1.56258 1.68018 1.84807 2.32563 2.44792 2.83647 2.97916 3.17747 3.26754 3.75912 3.88979 4.00131 4.11479 4.16807 4.19329 4.35474 4.38701 4.47595 4.54745 4.62851 4.65180 4.70368 4.72966 4.77249 4.97996 5.01488 5.15728 5.20484 5.22502 5.23895 5.36457 5.36927 5.69869 6.06218 6.18048 6.48321 6.89931 6.96253 7.45318 8.94981 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.003352 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.077214 B = 8350.147916 C = 9409.632244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.536 5.536 11 C 0.148 3.852 12 C 0.225 3.775 13 N -0.490 5.490 14 C 0.235 3.765 15 C -0.171 4.171 16 C -0.085 4.085 17 C -0.146 4.146 18 C -0.185 4.185 19 S 0.169 5.831 20 N -0.391 5.391 21 O 0.077 5.923 22 C 0.085 3.915 23 C -0.161 4.161 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.264 0.736 27 H -0.021 1.021 28 H 0.022 0.978 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.179 0.821 33 H 0.208 0.792 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 -21.015 -0.994 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.088 3.912 10 N -0.262 5.262 11 C 0.019 3.981 12 C 0.004 3.996 13 N -0.225 5.225 14 C -0.036 4.036 15 C -0.290 4.290 16 C -0.121 4.121 17 C -0.175 4.175 18 C -0.322 4.322 19 S 0.433 5.567 20 N -0.101 5.101 21 O 0.020 5.980 22 C -0.043 4.043 23 C -0.179 4.179 24 C -0.209 4.209 25 C -0.199 4.199 26 H 0.072 0.928 27 H -0.003 1.003 28 H 0.040 0.960 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.164 0.836 32 H 0.196 0.804 33 H 0.225 0.775 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.979 -21.352 -0.916 23.181 hybrid contribution 0.884 1.527 -0.146 1.770 sum 9.862 -19.826 -1.062 22.169 Atomic orbital electron populations 1.70052 1.07502 1.27849 1.51732 1.25752 0.95570 1.02657 0.94946 0.85573 0.78231 0.78595 0.79054 1.19053 1.21247 1.19876 1.21441 0.93799 0.90842 1.49973 0.91665 1.19443 0.89690 0.87263 0.94801 1.61958 1.31964 1.06146 1.26111 1.20580 0.88740 0.95805 0.93020 1.28857 0.87361 0.91477 0.91880 1.72085 1.20304 1.07467 1.22646 1.23136 0.86031 0.94613 0.99785 1.21472 0.99463 0.90928 1.17087 1.20643 0.95120 0.97577 0.98740 1.20309 1.01575 0.91535 1.04057 1.26507 0.95096 1.05162 1.05422 1.84511 1.12094 0.93497 1.66587 1.74972 1.19332 0.93339 1.22474 1.85289 1.20167 1.29618 1.62902 1.21711 0.96784 0.92116 0.93674 1.22173 1.06083 0.96067 0.93619 1.22939 0.95496 1.02337 1.00098 1.23028 0.94238 0.99476 1.03137 0.92758 1.00294 0.96027 0.86213 0.89352 0.83613 0.80378 0.77548 0.94854 0.90796 0.89459 0.89700 0.88445 0.87634 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.52 -27.83 8.62 25.60 0.22 -27.60 16 8 H 0.07 3.41 7.66 -2.91 -0.02 3.39 16 9 C 0.21 10.50 4.55 85.56 0.39 10.89 16 10 N -0.54 -22.02 4.37 -905.38 -3.96 -25.97 16 11 C 0.15 5.28 5.41 85.56 0.46 5.75 16 12 C 0.23 7.80 7.15 88.35 0.63 8.43 16 13 N -0.49 -16.56 10.48 -302.28 -3.17 -19.73 16 14 C 0.23 7.65 8.02 136.96 1.10 8.75 16 15 C -0.17 -4.48 6.44 24.01 0.15 -4.33 16 16 C -0.08 -1.79 10.05 21.39 0.22 -1.57 16 17 C -0.15 -2.06 10.16 21.14 0.21 -1.84 16 18 C -0.18 -2.38 11.23 66.79 0.75 -1.63 16 19 S 0.17 3.41 23.32 -56.49 -1.32 2.09 16 20 N -0.39 -13.55 12.16 -58.78 -0.72 -14.27 16 21 O 0.08 2.75 11.29 74.48 0.84 3.59 16 22 C 0.09 3.10 5.11 86.30 0.44 3.54 16 23 C -0.16 -5.64 5.58 -10.79 -0.06 -5.70 16 24 C -0.17 -5.07 10.18 30.62 0.31 -4.76 16 25 C -0.16 -4.41 10.25 30.62 0.31 -4.09 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H -0.02 -1.07 8.00 -2.38 -0.02 -1.09 16 28 H 0.02 1.17 6.47 -2.39 -0.02 1.15 16 29 H 0.12 4.31 7.33 -2.39 -0.02 4.29 16 30 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 35 H 0.07 2.61 5.82 -2.39 -0.01 2.60 16 36 H 0.09 3.58 6.88 -2.39 -0.02 3.57 16 37 H 0.08 2.50 8.04 -2.39 -0.02 2.48 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -63.28 357.26 0.66 -62.62 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.06 Total: 13.27 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.61 Total: -13.19 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -7.55 Total: -113.39 kcal Atomic # 8 Polarization: 2.75 SS G_CDS: 0.84 Total: 3.59 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.32 Total: 2.09 kcal Total: -63.28 0.66 -62.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.223 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds