Wall clock time and date at job start Tue Mar 31 2020 12:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.44597 * 123.57561 * 87.93890 * 3 2 1 5 5 C 1.32618 * 113.14551 * 179.97438 * 4 3 2 6 6 S 1.75461 * 110.78043 * 0.02562 * 5 4 3 7 7 C 1.36983 * 123.58095 * 267.93697 * 3 2 1 8 8 N 1.38806 * 124.64563 * 359.97438 * 7 3 2 9 9 C 1.34773 * 119.99747 * 179.97438 * 8 7 3 10 10 O 1.21288 * 120.00236 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99857 * 180.02562 * 9 8 7 12 12 N 1.46903 * 109.47166 * 180.02562 * 11 9 8 13 13 C 1.46907 * 110.99784 * 190.00049 * 12 11 9 14 14 C 1.50702 * 109.46992 * 75.52667 * 13 12 11 15 15 H 1.08001 * 119.99963 * 356.43940 * 14 13 12 16 16 C 1.37877 * 119.99742 * 176.43798 * 14 13 12 17 17 N 1.31513 * 119.99893 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00219 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46697 * 89.99950 * 18 16 14 20 20 H 1.48496 * 109.47053 * 210.00442 * 18 16 14 21 21 H 1.48506 * 109.46880 * 330.00269 * 18 16 14 22 22 C 1.46900 * 110.99682 * 66.04930 * 12 11 9 23 23 C 1.53002 * 109.46819 * 195.94117 * 22 12 11 24 24 C 1.53001 * 117.49673 * 243.78013 * 23 22 12 25 25 C 1.52993 * 117.49887 * 175.15900 * 23 22 12 26 26 H 1.08001 * 123.42133 * 0.02562 * 4 3 2 27 27 H 1.08000 * 124.60538 * 180.26429 * 5 4 3 28 28 H 0.97000 * 119.99873 * 0.02562 * 8 7 3 29 29 H 1.09002 * 109.47379 * 300.00676 * 11 9 8 30 30 H 1.09001 * 109.47191 * 60.00517 * 11 9 8 31 31 H 1.08998 * 109.46512 * 195.52202 * 13 12 11 32 32 H 1.08991 * 109.47124 * 315.52493 * 13 12 11 33 33 H 0.97000 * 119.99869 * 180.02562 * 17 16 14 34 34 H 1.09000 * 109.47127 * 315.93675 * 22 12 11 35 35 H 1.08995 * 109.47172 * 75.94361 * 22 12 11 36 36 H 1.09000 * 115.55000 * 29.48803 * 23 22 12 37 37 H 1.08996 * 117.50068 * 0.02562 * 24 23 22 38 38 H 1.09008 * 117.49837 * 145.02076 * 24 23 22 39 39 H 1.09000 * 117.50140 * 214.97869 * 25 23 22 40 40 H 1.09001 * 117.50120 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3677 -0.0423 -1.2039 5 6 4.6720 -0.0326 -0.9640 6 16 4.9872 0.0295 0.7609 7 6 3.3257 0.0421 1.1405 8 7 2.8108 0.0887 2.4287 9 6 3.6447 0.1267 3.4867 10 8 4.8451 0.1205 3.3133 11 6 3.0857 0.1768 4.8852 12 7 4.1903 0.2121 5.8531 13 6 3.6958 0.0229 7.2234 14 6 3.3529 -1.4289 7.4377 15 1 3.4340 -2.1294 6.6197 16 6 2.9356 -1.8628 8.6781 17 7 2.6368 -3.1298 8.8653 18 14 2.7960 -0.6514 10.0932 19 1 1.4304 -0.0685 10.1128 20 1 3.0520 -1.3560 11.3750 21 1 3.7947 0.4333 9.9165 22 6 4.9526 1.4624 5.7365 23 6 6.2969 1.3086 6.4508 24 6 6.5584 2.2031 7.6642 25 6 7.2891 2.4684 6.3464 26 1 2.9457 -0.0779 -2.1974 27 1 5.4361 -0.0555 -1.7269 28 1 1.8507 0.0933 2.5673 29 1 2.4737 1.0714 5.0001 30 1 2.4739 -0.7075 5.0639 31 1 4.4673 0.3225 7.9326 32 1 2.8054 0.6328 7.3758 33 1 2.3429 -3.4350 9.7378 34 1 5.1242 1.6864 4.6836 35 1 4.3891 2.2755 6.1939 36 1 6.7045 0.2979 6.4729 37 1 5.7727 2.9009 7.9538 38 1 7.1383 1.7810 8.4851 39 1 8.3496 2.2209 6.3002 40 1 6.9841 3.3413 5.7692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:00 Heat of formation + Delta-G solvation = 47.616331 kcal Electronic energy + Delta-G solvation = -23685.311357 eV Core-core repulsion = 20206.524391 eV Total energy + Delta-G solvation = -3478.786966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62628 -39.46252 -38.77278 -37.04185 -36.80021 -35.73484 -34.56026 -30.98576 -30.07879 -28.96471 -26.27175 -25.35148 -23.29982 -23.03241 -22.36927 -21.63475 -21.09481 -19.92341 -18.96433 -18.87208 -17.32010 -17.04388 -16.74250 -16.45949 -16.19803 -15.79230 -15.38150 -15.24966 -15.16422 -15.02933 -14.80771 -14.32323 -14.26558 -13.79109 -13.75757 -13.69396 -13.40961 -13.08678 -12.91641 -12.56912 -12.52731 -12.30812 -12.22316 -11.97390 -11.87655 -11.79168 -11.50042 -11.09114 -10.90096 -10.76571 -10.54001 -9.38195 -9.17178 -9.05506 -8.25405 -6.28301 -0.31561 0.29199 1.06285 1.09371 1.35735 1.36675 1.39267 1.48926 1.62727 1.66240 2.36461 2.45163 2.92513 3.06026 3.08574 3.20073 3.56638 3.95996 3.99040 4.10407 4.20270 4.24443 4.31450 4.45267 4.52725 4.66028 4.78197 4.81872 4.82881 4.95462 4.97222 5.06714 5.10848 5.23336 5.31086 5.32046 5.44489 5.58301 5.81300 5.98820 6.28674 6.45870 6.60684 6.73976 6.78224 7.35318 8.91101 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.003736 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.394734 B = 7493.716308 C = 8965.801365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.295 3.705 3 C -0.137 4.137 4 C -0.076 4.076 5 C -0.267 4.267 6 S 0.305 5.695 7 C 0.054 3.946 8 N -0.632 5.632 9 C 0.516 3.484 10 O -0.495 6.495 11 C 0.047 3.953 12 N -0.527 5.527 13 C 0.176 3.824 14 C -0.511 4.511 15 H 0.037 0.963 16 C 0.011 3.989 17 N -0.949 5.949 18 Si 0.939 3.061 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.245 1.245 22 C 0.088 3.912 23 C -0.153 4.153 24 C -0.190 4.190 25 C -0.155 4.155 26 H 0.173 0.827 27 H 0.203 0.797 28 H 0.425 0.575 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.039 0.961 32 H -0.004 1.004 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 12.961 -16.891 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.019 4.019 3 C -0.159 4.159 4 C -0.105 4.105 5 C -0.402 4.402 6 S 0.566 5.434 7 C -0.168 4.168 8 N -0.276 5.276 9 C 0.304 3.696 10 O -0.369 6.369 11 C -0.084 4.084 12 N -0.252 5.252 13 C 0.049 3.951 14 C -0.550 4.550 15 H 0.056 0.944 16 C -0.186 4.186 17 N -0.590 5.590 18 Si 0.763 3.237 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.168 1.168 22 C -0.039 4.039 23 C -0.172 4.172 24 C -0.227 4.227 25 C -0.192 4.192 26 H 0.190 0.810 27 H 0.220 0.780 28 H 0.264 0.736 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.175 12.490 -16.040 21.558 hybrid contribution -2.486 0.209 0.434 2.532 sum 4.689 12.698 -15.606 20.659 Atomic orbital electron populations 1.81303 1.12775 1.12521 1.08002 1.25144 0.91886 0.91894 0.93001 1.16229 0.84714 1.22114 0.92817 1.20847 0.91765 1.00768 0.97093 1.26251 1.00611 1.11123 1.02220 1.84635 0.94224 1.67404 0.97124 1.22359 1.02731 1.04392 0.87316 1.42987 1.11878 1.70674 1.02082 1.21267 0.86654 0.74676 0.87001 1.90600 1.15183 1.46652 1.84469 1.21849 0.94424 1.04649 0.87497 1.61465 1.23057 1.35699 1.04939 1.19981 0.94010 0.94885 0.86190 1.21256 1.43262 0.93962 0.96497 0.94436 1.25771 0.94713 0.96708 1.01432 1.70051 1.47579 1.16827 1.24498 0.85827 0.79718 0.79742 0.78380 1.19183 1.21315 1.16822 1.21757 0.92360 0.89146 1.00676 1.22105 0.97084 0.96126 1.01912 1.23088 1.03937 1.03382 0.92276 1.22981 0.97789 0.99113 0.99357 0.80986 0.78042 0.73606 0.89513 0.87579 0.94300 0.98665 0.92597 0.89604 0.94977 0.89498 0.88860 0.89132 0.87845 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.00 18.54 19.00 0.35 -12.65 16 2 C 0.30 6.92 14.98 88.33 1.32 8.24 16 3 C -0.14 -2.70 5.88 -20.70 -0.12 -2.82 16 4 C -0.08 -1.07 10.35 22.73 0.24 -0.83 16 5 C -0.27 -3.33 11.10 66.66 0.74 -2.59 16 6 S 0.30 5.85 19.96 -56.49 -1.13 4.72 16 7 C 0.05 1.17 6.98 83.29 0.58 1.75 16 8 N -0.63 -14.72 5.37 -309.04 -1.66 -16.38 16 9 C 0.52 14.73 7.35 87.66 0.64 15.38 16 10 O -0.50 -15.83 11.91 -3.05 -0.04 -15.86 16 11 C 0.05 1.49 5.27 85.55 0.45 1.94 16 12 N -0.53 -20.15 4.12 -905.36 -3.73 -23.88 16 13 C 0.18 7.80 3.67 85.56 0.31 8.12 16 14 C -0.51 -28.13 9.15 25.60 0.23 -27.90 16 15 H 0.04 2.32 7.92 -2.91 -0.02 2.30 16 16 C 0.01 0.62 5.47 84.65 0.46 1.09 16 17 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 18 Si 0.94 42.38 27.54 68.60 1.89 44.27 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.24 -10.18 6.44 99.48 0.64 -9.54 16 22 C 0.09 2.80 4.80 86.30 0.41 3.21 16 23 C -0.15 -4.80 4.97 -10.80 -0.05 -4.86 16 24 C -0.19 -5.14 10.00 30.59 0.31 -4.84 16 25 C -0.16 -3.64 10.25 30.59 0.31 -3.33 16 26 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 27 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.43 8.63 8.15 -92.71 -0.76 7.87 16 29 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 30 H 0.11 3.77 7.33 -2.39 -0.02 3.75 16 31 H 0.04 1.76 5.78 -2.39 -0.01 1.74 16 32 H 0.00 -0.18 7.61 -2.39 -0.02 -0.20 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.09 2.59 5.81 -2.39 -0.01 2.58 16 35 H 0.03 0.95 7.79 -2.39 -0.02 0.93 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 38 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.12 355.80 2.09 -67.03 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.26 Total: 18.02 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.84 Total: -7.44 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.74 Total: -110.74 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.04 Total: -15.86 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.89 Total: 44.27 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.13 Total: 4.72 kcal Total: -69.12 2.09 -67.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.642 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds