Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38742 * 120.01193 * 2 1 4 4 C 1.37170 * 120.61490 * 179.97438 * 3 2 1 5 5 C 1.41124 * 120.43107 * 0.26292 * 4 3 2 6 6 N 1.34751 * 128.75507 * 180.29033 * 5 4 3 7 7 C 1.28790 * 117.91991 * 179.68229 * 6 5 4 8 8 N 1.38542 * 124.81456 * 179.76364 * 7 6 5 9 9 C 1.34776 * 119.99800 * 359.97438 * 8 7 6 10 10 O 1.21270 * 119.99990 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99950 * 180.02562 * 9 8 7 12 12 N 1.46903 * 109.47324 * 180.02562 * 11 9 8 13 13 C 1.46905 * 110.99660 * 293.95186 * 12 11 9 14 14 C 1.46900 * 111.00193 * 169.99891 * 12 11 9 15 15 C 1.50698 * 109.47308 * 189.99815 * 14 12 11 16 16 H 1.08003 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00297 * 180.02562 * 15 14 12 18 18 N 1.31521 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47153 * 119.99730 * 19 17 15 22 22 H 1.48502 * 109.46833 * 239.99780 * 19 17 15 23 23 S 1.75804 * 110.37237 * 359.75901 * 7 6 5 24 24 C 1.39814 * 118.36868 * 359.51244 * 5 4 3 25 25 C 1.37693 * 120.00812 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46762 * 89.99973 * 1 2 3 27 27 H 1.09002 * 109.46756 * 209.99981 * 1 2 3 28 28 H 1.08993 * 109.46768 * 329.99995 * 1 2 3 29 29 H 1.08005 * 119.69115 * 359.95808 * 3 2 1 30 30 H 1.08002 * 119.78110 * 179.97438 * 4 3 2 31 31 H 0.96993 * 120.00049 * 179.97438 * 8 7 6 32 32 H 1.09003 * 109.47259 * 300.00117 * 11 9 8 33 33 H 1.09002 * 109.47202 * 60.00166 * 11 9 8 34 34 H 1.08999 * 109.46832 * 59.99944 * 13 12 11 35 35 H 1.09004 * 109.46996 * 180.02562 * 13 12 11 36 36 H 1.08994 * 109.47404 * 299.99823 * 13 12 11 37 37 H 1.08996 * 109.47261 * 310.00271 * 14 12 11 38 38 H 1.09002 * 109.47008 * 69.99485 * 14 12 11 39 39 H 0.97000 * 119.99960 * 180.02562 * 18 17 15 40 40 H 1.07992 * 119.90098 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2014 0.0000 4 6 3.5726 1.2158 0.0005 5 6 4.3002 0.0066 -0.0045 6 7 5.6354 -0.1745 0.0005 7 6 6.0801 -1.3832 0.0004 8 7 7.4207 -1.7328 0.0005 9 6 8.3673 -0.7734 0.0001 10 8 8.0455 0.3959 -0.0008 11 6 9.8255 -1.1536 -0.0004 12 7 10.6488 0.0630 -0.0002 13 6 10.4824 0.8114 -1.2533 14 6 12.0625 -0.2580 0.2375 15 6 12.8336 1.0147 0.4751 16 1 12.3243 1.9669 0.4522 17 6 14.1892 0.9637 0.7216 18 7 14.8092 -0.1958 0.7499 19 14 15.1449 2.5413 1.0168 20 1 14.2223 3.7020 0.9331 21 1 15.7664 2.4987 2.3647 22 1 16.2057 2.6775 -0.0134 23 16 4.7447 -2.5266 0.0004 24 6 3.5885 -1.1969 0.0005 25 6 2.1956 -1.1924 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8899 0.5138 29 1 1.6561 2.1339 -0.0007 30 1 4.0991 2.1588 0.0001 31 1 7.6780 -2.6680 0.0008 32 1 10.0477 -1.7425 0.8895 33 1 10.0471 -1.7426 -0.8905 34 1 9.4369 1.0969 -1.3698 35 1 11.1032 1.7070 -1.2267 36 1 10.7839 0.1856 -2.0931 37 1 12.1466 -0.9025 1.1125 38 1 12.4696 -0.7725 -0.6330 39 1 15.7628 -0.2318 0.9237 40 1 1.6542 -2.1267 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = 40.548022 kcal Electronic energy + Delta-G solvation = -23014.735829 eV Core-core repulsion = 19535.642358 eV Total energy + Delta-G solvation = -3479.093471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71539 -39.75137 -37.40454 -35.99701 -34.68285 -32.53575 -31.79003 -31.03851 -28.70387 -27.08540 -26.54670 -24.73454 -23.98385 -22.84866 -21.94069 -20.53229 -20.00394 -18.78943 -17.28308 -17.04742 -16.24732 -15.89281 -15.83351 -15.35372 -14.85930 -14.70185 -14.59491 -14.13611 -14.00906 -13.99794 -13.82698 -13.44030 -12.90608 -12.50610 -12.39892 -12.11883 -12.07811 -11.87614 -11.45237 -11.11397 -11.08970 -10.88398 -10.70831 -10.63439 -10.31853 -10.21779 -10.09755 -9.89129 -9.37939 -9.06267 -8.46003 -8.39455 -8.13975 -7.32491 -6.05283 -4.05749 0.27665 0.67341 0.91973 1.35679 2.09572 2.69538 2.88678 3.31759 3.39122 3.45703 3.51331 4.01750 4.39492 4.43523 4.53588 4.80707 4.87356 4.95021 4.96041 5.21534 5.23831 5.31248 5.31955 5.51472 5.59856 5.66370 5.72776 5.77199 5.91789 6.14127 6.20063 6.28024 6.36577 6.45429 6.81802 6.92850 7.18214 7.24533 7.65245 7.76919 7.98940 8.11422 8.23330 8.47778 9.02419 9.58548 11.05793 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.002327 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.187997 B =12031.931999 C =12760.072886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 C -0.102 4.102 4 C -0.067 4.067 5 C 0.111 3.889 6 N -0.471 5.471 7 C 0.353 3.647 8 N -0.639 5.639 9 C 0.504 3.496 10 O -0.441 6.441 11 C 0.044 3.956 12 N -0.524 5.524 13 C 0.031 3.969 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.066 0.934 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.285 1.285 23 S 0.043 5.957 24 C -0.177 4.177 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.423 0.577 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.007 0.993 37 H 0.032 0.968 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.382 -6.817 -2.852 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.088 4.088 5 C -0.009 4.009 6 N -0.192 5.192 7 C -0.023 4.023 8 N -0.292 5.292 9 C 0.288 3.712 10 O -0.305 6.305 11 C -0.089 4.089 12 N -0.249 5.249 13 C -0.117 4.117 14 C 0.069 3.931 15 C -0.544 4.544 16 H 0.084 0.916 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 S 0.293 5.707 24 C -0.296 4.296 25 C -0.091 4.091 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.260 0.740 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.012 0.988 39 H 0.070 0.930 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.061 -6.359 -2.434 27.904 hybrid contribution 0.795 0.317 -0.451 0.967 sum -26.266 -6.042 -2.885 27.106 Atomic orbital electron populations 1.20765 0.90360 1.03057 1.02552 1.19787 0.96226 0.92371 1.00207 1.20837 0.93207 0.98002 1.00266 1.20718 0.93156 0.96002 0.98882 1.19024 0.86207 0.93763 1.01941 1.66443 1.12466 1.18952 1.21301 1.24017 0.90107 0.90105 0.98042 1.43580 1.00554 1.12079 1.73017 1.21624 0.87845 0.85640 0.76077 1.90783 1.81405 1.17430 1.40884 1.21942 0.88238 0.95705 1.02987 1.61876 1.10992 1.17249 1.34747 1.22393 1.01651 0.99022 0.88660 1.19810 0.80037 0.97389 0.95889 1.21183 0.92373 0.93176 1.47625 0.91573 1.24987 0.97689 0.96478 0.95538 1.69963 1.09861 1.24003 1.50150 0.86407 0.79722 0.83421 0.77709 1.19567 1.20987 1.21112 1.84843 0.97604 1.08491 1.79766 1.23450 0.98710 0.95128 1.12342 1.20083 0.89835 0.98385 1.00826 0.90921 0.91408 0.91151 0.84829 0.84505 0.73952 0.87757 0.92323 0.91815 0.90446 0.97442 0.95005 0.98779 0.92964 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.08 -0.69 5.88 -104.63 -0.62 -1.30 16 3 C -0.10 -0.92 9.65 -39.78 -0.38 -1.30 16 4 C -0.07 -0.79 10.10 -38.88 -0.39 -1.19 16 5 C 0.11 1.58 6.94 -84.90 -0.59 0.99 16 6 N -0.47 -7.84 8.63 -11.05 -0.10 -7.94 16 7 C 0.35 4.94 8.19 -88.47 -0.72 4.22 16 8 N -0.64 -8.06 5.39 -12.19 -0.07 -8.12 16 9 C 0.50 8.35 7.52 -10.99 -0.08 8.27 16 10 O -0.44 -9.20 12.93 5.57 0.07 -9.13 16 11 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 12 N -0.52 -11.57 4.49 -245.82 -1.10 -12.68 16 13 C 0.03 0.65 9.03 60.07 0.54 1.20 16 14 C 0.19 4.95 4.72 -4.98 -0.02 4.93 16 15 C -0.50 -14.29 8.46 -34.44 -0.29 -14.58 16 16 H 0.07 1.90 7.12 -52.48 -0.37 1.52 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 S 0.04 0.45 23.39 -107.50 -2.51 -2.06 16 24 C -0.18 -2.12 6.52 -38.60 -0.25 -2.37 16 25 C -0.07 -0.64 9.71 -39.39 -0.38 -1.03 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.42 3.45 8.82 -40.82 -0.36 3.09 16 32 H 0.10 1.56 7.93 -51.93 -0.41 1.15 16 33 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 34 H 0.06 1.31 5.88 -51.93 -0.31 1.01 16 35 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 38 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -35.18 352.22 -10.79 -45.97 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.15 Total: -2.23 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.96 Total: -0.23 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.53 Total: -54.45 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.51 Total: -2.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.18 -10.79 -45.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.519 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds