Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38742 * 120.01193 * 2 1 4 4 C 1.37170 * 120.61490 * 179.97438 * 3 2 1 5 5 C 1.41124 * 120.43107 * 0.26292 * 4 3 2 6 6 N 1.34751 * 128.75507 * 180.29033 * 5 4 3 7 7 C 1.28790 * 117.91991 * 179.68229 * 6 5 4 8 8 N 1.38542 * 124.81456 * 179.76364 * 7 6 5 9 9 C 1.34776 * 119.99800 * 359.97438 * 8 7 6 10 10 O 1.21270 * 119.99990 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99950 * 180.02562 * 9 8 7 12 12 N 1.46903 * 109.47324 * 180.02562 * 11 9 8 13 13 C 1.46905 * 110.99660 * 293.95186 * 12 11 9 14 14 C 1.46900 * 111.00193 * 169.99891 * 12 11 9 15 15 C 1.50698 * 109.47308 * 189.99815 * 14 12 11 16 16 H 1.08003 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00297 * 180.02562 * 15 14 12 18 18 N 1.31521 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47153 * 119.99730 * 19 17 15 22 22 H 1.48502 * 109.46833 * 239.99780 * 19 17 15 23 23 S 1.75804 * 110.37237 * 359.75901 * 7 6 5 24 24 C 1.39814 * 118.36868 * 359.51244 * 5 4 3 25 25 C 1.37693 * 120.00812 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46762 * 89.99973 * 1 2 3 27 27 H 1.09002 * 109.46756 * 209.99981 * 1 2 3 28 28 H 1.08993 * 109.46768 * 329.99995 * 1 2 3 29 29 H 1.08005 * 119.69115 * 359.95808 * 3 2 1 30 30 H 1.08002 * 119.78110 * 179.97438 * 4 3 2 31 31 H 0.96993 * 120.00049 * 179.97438 * 8 7 6 32 32 H 1.09003 * 109.47259 * 300.00117 * 11 9 8 33 33 H 1.09002 * 109.47202 * 60.00166 * 11 9 8 34 34 H 1.08999 * 109.46832 * 59.99944 * 13 12 11 35 35 H 1.09004 * 109.46996 * 180.02562 * 13 12 11 36 36 H 1.08994 * 109.47404 * 299.99823 * 13 12 11 37 37 H 1.08996 * 109.47261 * 310.00271 * 14 12 11 38 38 H 1.09002 * 109.47008 * 69.99485 * 14 12 11 39 39 H 0.97000 * 119.99960 * 180.02562 * 18 17 15 40 40 H 1.07992 * 119.90098 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2014 0.0000 4 6 3.5726 1.2158 0.0005 5 6 4.3002 0.0066 -0.0045 6 7 5.6354 -0.1745 0.0005 7 6 6.0801 -1.3832 0.0004 8 7 7.4207 -1.7328 0.0005 9 6 8.3673 -0.7734 0.0001 10 8 8.0455 0.3959 -0.0008 11 6 9.8255 -1.1536 -0.0004 12 7 10.6488 0.0630 -0.0002 13 6 10.4824 0.8114 -1.2533 14 6 12.0625 -0.2580 0.2375 15 6 12.8336 1.0147 0.4751 16 1 12.3243 1.9669 0.4522 17 6 14.1892 0.9637 0.7216 18 7 14.8092 -0.1958 0.7499 19 14 15.1449 2.5413 1.0168 20 1 14.2223 3.7020 0.9331 21 1 15.7664 2.4987 2.3647 22 1 16.2057 2.6775 -0.0134 23 16 4.7447 -2.5266 0.0004 24 6 3.5885 -1.1969 0.0005 25 6 2.1956 -1.1924 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8899 0.5138 29 1 1.6561 2.1339 -0.0007 30 1 4.0991 2.1588 0.0001 31 1 7.6780 -2.6680 0.0008 32 1 10.0477 -1.7425 0.8895 33 1 10.0471 -1.7426 -0.8905 34 1 9.4369 1.0969 -1.3698 35 1 11.1032 1.7070 -1.2267 36 1 10.7839 0.1856 -2.0931 37 1 12.1466 -0.9025 1.1125 38 1 12.4696 -0.7725 -0.6330 39 1 15.7628 -0.2318 0.9237 40 1 1.6542 -2.1267 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = 16.776203 kcal Electronic energy + Delta-G solvation = -23015.766652 eV Core-core repulsion = 19535.642358 eV Total energy + Delta-G solvation = -3480.124295 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76129 -40.82868 -38.50098 -37.53654 -35.83200 -34.64318 -32.54293 -31.84494 -30.24799 -28.89110 -27.44258 -26.26035 -25.12070 -23.98636 -22.89846 -22.22847 -21.02718 -19.82747 -18.59031 -18.32455 -17.91100 -17.09856 -16.82095 -16.58369 -16.23940 -16.01605 -15.70071 -15.56218 -15.28372 -15.17800 -14.82501 -14.32297 -14.31432 -13.71638 -13.60050 -13.37354 -13.00372 -12.90204 -12.75046 -12.73912 -12.64744 -12.60697 -12.37958 -12.00995 -11.88169 -11.49734 -11.23112 -11.17829 -11.11236 -10.62189 -10.34395 -9.21756 -9.07657 -9.00896 -8.22017 -6.30177 -0.63081 -0.25689 0.13090 0.46497 1.11075 1.39817 1.40988 1.54452 1.68856 1.73521 2.40328 2.66391 2.97939 3.10826 3.34833 3.60923 3.80809 3.90546 4.20772 4.24216 4.25878 4.35806 4.45797 4.52476 4.65005 4.68654 4.87980 4.91925 4.92075 5.09170 5.14214 5.15162 5.20505 5.26624 5.29436 5.51267 5.62505 5.73075 5.90912 6.03215 6.23204 6.51304 6.70182 6.84040 7.06283 7.38695 8.88798 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.002327 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.187997 B =12031.931999 C =12760.072886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.090 4.090 5 C 0.069 3.931 6 N -0.516 5.516 7 C 0.322 3.678 8 N -0.622 5.622 9 C 0.513 3.487 10 O -0.493 6.493 11 C 0.043 3.957 12 N -0.544 5.544 13 C 0.042 3.958 14 C 0.209 3.791 15 C -0.526 4.526 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.276 1.276 23 S 0.113 5.887 24 C -0.194 4.194 25 C -0.074 4.074 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.127 0.873 31 H 0.443 0.557 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H -0.023 1.023 39 H 0.266 0.734 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.921 -7.827 -2.882 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.050 4.050 6 N -0.238 5.238 7 C -0.053 4.053 8 N -0.277 5.277 9 C 0.298 3.702 10 O -0.361 6.361 11 C -0.088 4.088 12 N -0.269 5.269 13 C -0.106 4.106 14 C 0.084 3.916 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.201 1.201 23 S 0.364 5.636 24 C -0.313 4.313 25 C -0.097 4.097 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.181 0.819 30 H 0.145 0.855 31 H 0.285 0.715 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H -0.005 1.005 39 H 0.074 0.926 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -29.637 -7.432 -2.468 30.654 hybrid contribution 1.338 0.583 -0.450 1.528 sum -28.298 -6.849 -2.918 29.261 Atomic orbital electron populations 1.20866 0.87478 1.04462 1.03767 1.20273 0.98140 0.91586 0.97547 1.21210 0.92031 0.99832 0.98419 1.20902 0.94566 0.95262 1.00383 1.19284 0.85870 0.95415 1.04456 1.66387 1.14363 1.21218 1.21869 1.24196 0.90865 0.91136 0.99140 1.43145 1.00007 1.12405 1.72114 1.21424 0.88208 0.85401 0.75214 1.90769 1.82183 1.19528 1.43617 1.22019 0.87675 0.93950 1.05199 1.61670 1.09557 1.20084 1.35581 1.22237 1.01268 0.98310 0.88813 1.19455 0.81949 0.95798 0.94412 1.21456 0.93200 0.93752 1.48023 0.92767 1.25803 0.98589 0.99758 0.95113 1.70051 1.10364 1.25855 1.50621 0.85390 0.78249 0.79354 0.77960 1.19556 1.20174 1.20121 1.84432 0.94638 1.05786 1.78728 1.23835 1.00059 0.95050 1.12393 1.20509 0.88869 1.00112 1.00162 0.89584 0.90048 0.89818 0.81932 0.85537 0.71519 0.85892 0.89493 0.91504 0.92665 0.96262 0.96326 1.00495 0.92558 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 71.24 0.71 0.04 16 2 C -0.07 -0.99 5.88 -19.87 -0.12 -1.11 16 3 C -0.09 -1.55 9.65 22.14 0.21 -1.33 16 4 C -0.09 -2.21 10.10 22.73 0.23 -1.98 16 5 C 0.07 2.01 6.94 39.79 0.28 2.29 16 6 N -0.52 -17.92 8.63 -188.87 -1.63 -19.55 16 7 C 0.32 9.04 8.19 179.60 1.47 10.51 16 8 N -0.62 -15.51 5.39 -310.88 -1.67 -17.18 16 9 C 0.51 17.21 7.52 87.66 0.66 17.87 16 10 O -0.49 -21.42 12.93 -3.00 -0.04 -21.46 16 11 C 0.04 1.43 5.45 85.56 0.47 1.90 16 12 N -0.54 -24.55 4.49 -931.64 -4.18 -28.73 16 13 C 0.04 1.82 9.03 127.69 1.15 2.97 16 14 C 0.21 10.98 4.72 85.56 0.40 11.38 16 15 C -0.53 -30.45 8.46 25.60 0.22 -30.24 16 16 H 0.05 3.20 7.12 -2.91 -0.02 3.18 16 17 C 0.01 0.33 5.46 84.65 0.46 0.79 16 18 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 19 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 S 0.11 2.24 23.39 -56.49 -1.32 0.92 16 24 C -0.19 -4.46 6.52 22.90 0.15 -4.31 16 25 C -0.07 -1.20 9.71 22.39 0.22 -0.98 16 26 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 28 H 0.08 0.34 8.09 -2.39 -0.02 0.33 16 29 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.44 6.66 8.82 -92.71 -0.82 5.85 16 32 H 0.12 3.58 7.93 -2.39 -0.02 3.56 16 33 H 0.09 2.42 8.12 -2.39 -0.02 2.41 16 34 H 0.07 2.86 5.88 -2.39 -0.01 2.85 16 35 H 0.05 2.58 6.76 -2.38 -0.02 2.57 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.02 1.01 7.93 -2.39 -0.02 1.00 16 38 H -0.02 -1.24 8.12 -2.39 -0.02 -1.26 16 39 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -79.13 352.22 0.23 -78.90 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.26 Total: 6.77 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.51 Total: 7.81 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -7.20 Total: -120.17 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.32 Total: 0.92 kcal Total: -79.13 0.23 -78.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.677 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds