Wall clock time and date at job start Tue Mar 31 2020 12:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31125 * 126.55341 * 2 1 4 4 C 1.34496 * 105.61428 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.28660 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47096 * 89.99602 * 5 4 3 7 7 C 1.40003 * 119.99961 * 179.97438 * 6 5 4 8 8 C 1.38643 * 120.09675 * 359.73145 * 7 6 5 9 9 C 1.38293 * 120.00483 * 179.69935 * 8 7 6 10 10 C 1.38262 * 120.20057 * 0.59878 * 9 8 7 11 11 C 1.38249 * 120.19872 * 359.67395 * 10 9 8 12 12 C 1.38730 * 119.99365 * 0.02596 * 11 10 9 13 13 S 1.76197 * 120.10241 * 179.97438 * 12 11 10 14 14 C 1.81405 * 103.00125 * 5.73942 * 13 12 11 15 15 H 1.09003 * 109.46808 * 309.34162 * 14 13 12 16 16 C 1.52994 * 109.47059 * 189.34595 * 14 13 12 17 17 C 1.50694 * 109.47314 * 69.33925 * 14 13 12 18 18 H 1.08008 * 119.99793 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00287 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99419 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00202 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47175 * 90.00030 * 21 19 17 23 23 H 1.48506 * 109.47158 * 210.00398 * 21 19 17 24 24 H 1.48507 * 109.46983 * 330.00001 * 21 19 17 25 25 N 1.29941 * 107.42574 * 359.97438 * 4 3 2 26 26 O 1.21306 * 110.25024 * 359.70860 * 25 4 3 27 27 H 1.08997 * 109.47076 * 89.99823 * 1 2 3 28 28 H 1.09000 * 109.46879 * 210.00037 * 1 2 3 29 29 H 1.09000 * 109.46719 * 329.99953 * 1 2 3 30 30 H 1.08993 * 109.46615 * 209.99733 * 5 4 3 31 31 H 1.09006 * 109.46648 * 329.99772 * 5 4 3 32 32 H 0.97003 * 120.00355 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.99889 * 359.97438 * 8 7 6 34 34 H 1.07996 * 119.89965 * 180.31543 * 9 8 7 35 35 H 1.08002 * 119.90520 * 179.70554 * 10 9 8 36 36 H 1.08004 * 120.00581 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.47874 * 53.79241 * 16 14 13 38 38 H 1.09002 * 109.47256 * 173.79691 * 16 14 13 39 39 H 1.09004 * 109.47206 * 293.78975 * 16 14 13 40 40 H 0.97000 * 119.99245 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 -0.0006 5 6 4.8113 1.3885 -0.0014 6 7 5.2225 1.6531 1.3796 7 6 6.3803 2.3978 1.6347 8 6 7.1421 2.8811 0.5820 9 6 8.2820 3.6218 0.8361 10 6 8.6726 3.8724 2.1385 11 6 7.9223 3.3898 3.1946 12 6 6.7739 2.6511 2.9491 13 16 5.8159 2.0340 4.2929 14 6 6.6266 2.7651 5.7417 15 1 7.6987 2.5740 5.6931 16 6 6.0545 2.1403 7.0157 17 6 6.3816 4.2519 5.7575 18 1 5.7963 4.7111 4.9745 19 6 6.9047 5.0261 6.7715 20 7 7.6178 4.4669 7.7246 21 14 6.6004 6.8690 6.7915 22 1 5.3564 7.1571 7.5498 23 1 7.7466 7.5529 7.4425 24 1 6.4562 7.3620 5.3981 25 7 3.4645 -0.7243 -0.0003 26 8 2.3029 -1.0736 0.0061 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 5.5982 0.8367 -0.5155 31 1 4.6347 2.3334 -0.5153 32 1 4.6931 1.3118 2.1173 33 1 6.8430 2.6829 -0.4367 34 1 8.8714 4.0017 0.0148 35 1 9.5662 4.4474 2.3315 36 1 8.2300 3.5878 4.2108 37 1 6.1326 1.0548 6.9548 38 1 6.6160 2.4971 7.8792 39 1 5.0073 2.4238 7.1209 40 1 7.9860 5.0116 8.4378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086207548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:59 Heat of formation + Delta-G solvation = 93.044326 kcal Electronic energy + Delta-G solvation = -23480.833074 eV Core-core repulsion = 20004.016013 eV Total energy + Delta-G solvation = -3476.817061 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.86479 -38.89613 -36.65598 -35.20293 -34.11426 -33.54123 -30.61635 -30.27684 -29.63667 -29.03300 -26.58036 -25.31527 -23.88041 -22.55554 -22.07078 -21.26946 -20.61720 -18.45678 -17.86100 -17.20599 -16.42457 -16.21345 -15.80558 -15.31240 -14.92181 -14.31515 -14.06986 -14.00828 -13.82775 -13.55834 -13.44894 -13.39383 -12.99495 -12.67552 -12.51279 -12.24989 -11.87923 -11.70502 -11.54531 -11.29575 -11.13422 -10.94366 -10.74428 -10.48666 -10.34459 -10.18854 -9.99333 -9.83249 -9.36215 -8.94529 -8.88909 -8.46300 -7.40883 -6.36689 -6.06164 -4.24607 0.87405 1.85632 1.90379 2.11424 2.55204 2.71267 3.24877 3.27319 3.31619 3.36533 3.62122 3.72671 3.93124 4.35068 4.37469 4.62317 4.86074 4.87861 5.06372 5.15131 5.29420 5.33046 5.40041 5.53641 5.56005 5.72686 5.77872 6.04650 6.16218 6.49618 6.60599 6.65868 6.74120 6.82884 6.88833 7.17226 7.30178 7.36675 7.59567 7.62737 7.82350 7.90706 7.91068 8.03875 8.77016 9.40136 10.88635 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003512 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.525470 B = 7969.725060 C = 8876.941516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.176 3.824 3 N -0.470 5.470 4 C 0.160 3.840 5 C 0.225 3.775 6 N -0.742 5.742 7 C 0.219 3.781 8 C -0.193 4.193 9 C -0.093 4.093 10 C -0.160 4.160 11 C -0.067 4.067 12 C -0.114 4.114 13 S -0.207 6.207 14 C 0.100 3.900 15 H 0.050 0.950 16 C -0.124 4.124 17 C -0.516 4.516 18 H 0.067 0.933 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 N -0.366 5.366 26 O 0.082 5.918 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.405 0.595 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.019 0.981 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 -7.639 -15.635 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 N -0.204 5.204 4 C -0.113 4.113 5 C 0.099 3.901 6 N -0.377 5.377 7 C 0.113 3.887 8 C -0.217 4.217 9 C -0.115 4.115 10 C -0.182 4.182 11 C -0.092 4.092 12 C -0.231 4.231 13 S 0.038 5.962 14 C -0.027 4.027 15 H 0.068 0.932 16 C -0.184 4.184 17 C -0.555 4.555 18 H 0.085 0.915 19 C -0.134 4.134 20 N -0.526 5.526 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 N -0.072 5.072 26 O 0.020 5.980 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.242 0.758 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.163 0.837 37 H 0.038 0.962 38 H 0.116 0.884 39 H 0.058 0.942 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.176 -8.466 -15.571 19.958 hybrid contribution 0.542 1.738 0.376 1.859 sum -8.634 -6.728 -15.194 18.727 Atomic orbital electron populations 1.20416 0.80031 1.06139 1.05397 1.28912 0.99042 0.80600 0.95924 1.71946 1.00123 1.28800 1.19555 1.25780 0.95332 0.88274 1.01959 1.19295 0.87324 0.97113 0.86375 1.44423 1.27422 1.60652 1.05240 1.17222 0.86711 0.92826 0.91932 1.20350 0.98522 1.06260 0.96595 1.20745 0.96079 0.98160 0.96479 1.20853 1.01173 1.03773 0.92391 1.21415 0.92427 0.94502 1.00810 1.21069 1.00702 1.07166 0.94113 1.84440 1.46334 1.63256 1.02158 1.21054 0.96656 0.97493 0.87517 0.93165 1.21635 1.00709 0.96050 0.99979 1.21271 1.33964 0.90106 1.10177 0.91510 1.24956 0.94548 0.98857 0.95068 1.69873 1.34358 1.35800 1.12613 0.86491 0.77862 0.84721 0.78528 1.20489 1.21075 1.19580 1.74701 0.97366 1.15661 1.19482 1.85312 1.11442 1.35884 1.65379 0.88009 0.88305 0.87536 0.89764 0.89288 0.75849 0.86716 0.86804 0.86693 0.83709 0.96175 0.88442 0.94243 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.18 1.70 8.51 -13.06 -0.11 1.59 16 3 N -0.47 -6.05 11.55 -9.87 -0.11 -6.16 16 4 C 0.16 2.17 7.59 -156.37 -1.19 0.98 16 5 C 0.23 2.97 5.54 -5.19 -0.03 2.95 16 6 N -0.74 -12.22 5.68 -59.62 -0.34 -12.55 16 7 C 0.22 4.00 6.66 -83.50 -0.56 3.44 16 8 C -0.19 -3.06 9.31 -39.41 -0.37 -3.43 16 9 C -0.09 -1.45 10.04 -39.55 -0.40 -1.85 16 10 C -0.16 -2.84 10.04 -39.57 -0.40 -3.24 16 11 C -0.07 -1.40 8.84 -39.40 -0.35 -1.75 16 12 C -0.11 -2.38 6.06 -38.92 -0.24 -2.62 16 13 S -0.21 -4.57 19.76 -107.50 -2.12 -6.69 16 14 C 0.10 2.47 2.00 -27.89 -0.06 2.42 16 15 H 0.05 1.32 6.90 -51.92 -0.36 0.96 16 16 C -0.12 -2.95 8.88 37.15 0.33 -2.62 16 17 C -0.52 -13.71 7.07 -34.44 -0.24 -13.95 16 18 H 0.07 1.85 7.71 -52.48 -0.40 1.45 16 19 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 20 N -0.89 -24.17 11.39 55.43 0.63 -23.54 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.37 -5.00 12.16 30.90 0.38 -4.62 16 26 O 0.08 0.93 11.31 18.10 0.20 1.13 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 31 H 0.09 1.08 7.97 -51.93 -0.41 0.67 16 32 H 0.40 7.21 7.01 -40.82 -0.29 6.92 16 33 H 0.11 1.48 6.74 -52.48 -0.35 1.12 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.15 3.35 5.12 -52.48 -0.27 3.08 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 2.47 6.26 -51.93 -0.33 2.15 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -30.39 349.84 -9.34 -39.73 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.92 Total: 7.69 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.31 Total: -16.21 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.55 Total: -46.88 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 0.20 Total: 1.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -2.12 Total: -6.69 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.39 -9.34 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086207548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.779 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds