Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31888 * 119.38468 * 2 1 4 4 C 1.32430 * 121.77426 * 180.28255 * 3 2 1 5 5 S 1.76199 * 119.83613 * 180.02562 * 4 3 2 6 6 C 1.81007 * 99.99706 * 359.97438 * 5 4 3 7 7 C 1.50703 * 109.46772 * 180.02562 * 6 5 4 8 8 O 1.21291 * 120.00452 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99718 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99697 * 0.02562 * 9 7 6 11 11 C 1.37093 * 120.00099 * 179.97438 * 9 7 6 12 12 H 1.08004 * 119.99843 * 24.39389 * 11 9 7 13 13 C 1.38944 * 120.00223 * 204.38889 * 11 9 7 14 14 N 1.31418 * 120.00011 * 12.67133 * 13 11 9 15 15 Si 1.86802 * 120.00237 * 192.66487 * 13 11 9 16 16 H 1.48500 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46891 * 119.99836 * 15 13 11 18 18 H 1.48498 * 109.47218 * 240.00178 * 15 13 11 19 19 C 1.40661 * 120.33388 * 359.97438 * 4 3 2 20 20 C 1.43199 * 120.61802 * 179.97438 * 19 4 3 21 21 N 4.76329 * 139.38711 * 0.43026 * 3 1 2 22 22 C 1.39923 * 118.76941 * 0.02562 * 19 4 3 23 23 C 1.50702 * 120.81323 * 179.97438 * 22 19 4 24 24 C 1.38319 * 119.38576 * 180.27970 * 2 1 3 25 25 C 1.50702 * 120.23427 * 359.69254 * 24 2 1 26 26 H 1.09003 * 109.46249 * 269.72455 * 1 2 3 27 27 H 1.08999 * 109.47024 * 29.72050 * 1 2 3 28 28 H 1.08998 * 109.47187 * 149.72405 * 1 2 3 29 29 H 1.08994 * 109.46910 * 299.99697 * 6 5 4 30 30 H 1.08999 * 109.46825 * 59.99889 * 6 5 4 31 31 H 1.08997 * 109.47707 * 85.86864 * 10 9 7 32 32 H 1.09002 * 109.46639 * 205.87104 * 10 9 7 33 33 H 1.08999 * 109.47162 * 325.86632 * 10 9 7 34 34 H 0.97000 * 119.99680 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47312 * 270.01996 * 23 22 19 36 36 H 1.08996 * 109.47307 * 30.02818 * 23 22 19 37 37 H 1.09004 * 109.46815 * 150.02633 * 23 22 19 38 38 H 1.09004 * 109.46996 * 90.00349 * 25 24 2 39 39 H 1.08996 * 109.46989 * 210.00289 * 25 24 2 40 40 H 1.09000 * 109.47417 * 330.00053 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1492 0.0000 4 6 3.4773 1.2044 -0.0056 5 16 4.2894 2.7681 -0.0046 6 6 2.8524 3.8686 0.0040 7 6 3.3175 5.3020 0.0053 8 8 4.5037 5.5548 0.0014 9 7 2.4151 6.3032 0.0120 10 6 0.9823 5.9979 0.0184 11 6 2.8381 7.6073 0.0137 12 1 3.8134 7.8591 -0.3761 13 6 2.0122 8.6049 0.5169 14 7 0.9440 8.2850 1.2122 15 14 2.4204 10.4009 0.2051 16 1 3.6658 10.4932 -0.5983 17 1 1.3045 11.0405 -0.5372 18 1 2.6150 11.0967 1.5025 19 6 4.2377 0.0211 -0.0111 20 6 5.6687 0.0737 -0.0177 21 7 6.8039 0.1156 -0.0233 22 6 3.5699 -1.2085 -0.0113 23 6 4.3388 -2.5046 -0.0177 24 6 2.1857 -1.2052 -0.0059 25 6 1.4236 -2.5053 -0.0052 26 1 -0.3632 -0.0049 1.0277 27 1 -0.3633 0.8925 -0.5095 28 1 -0.3633 -0.8875 -0.5181 29 1 2.2481 3.6839 -0.8841 30 1 2.2550 3.6791 0.8958 31 1 0.6474 5.8475 1.0447 32 1 0.4321 6.8275 -0.4256 33 1 0.8014 5.0914 -0.5593 34 1 0.3676 8.9815 1.5637 35 1 4.5201 -2.8144 -1.0469 36 1 5.2916 -2.3644 0.4928 37 1 3.7607 -3.2725 0.4964 38 1 1.2351 -2.8165 -1.0328 39 1 2.0100 -3.2699 0.5042 40 1 0.4745 -2.3699 0.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = 29.449187 kcal Electronic energy + Delta-G solvation = -23446.293321 eV Core-core repulsion = 19966.718568 eV Total energy + Delta-G solvation = -3479.574753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75971 -38.45167 -36.78684 -34.92017 -34.76827 -33.80490 -31.80402 -29.53551 -29.01699 -28.74117 -26.84902 -26.17964 -24.28440 -23.23975 -21.68965 -19.46252 -18.43994 -17.71687 -16.99831 -16.80985 -16.09706 -15.53851 -14.89271 -14.65672 -14.49381 -14.06234 -13.88061 -13.82442 -13.74768 -13.49558 -13.22230 -12.99875 -12.94335 -12.80307 -12.72071 -12.51518 -12.41230 -12.30691 -11.89564 -11.80248 -11.59008 -11.38392 -11.29402 -10.93424 -10.42464 -10.34897 -10.18638 -9.74811 -9.71945 -9.44206 -9.07817 -8.59918 -7.75700 -7.43159 -6.39308 -3.95871 0.37423 0.86478 1.54741 2.30822 2.68026 2.81237 3.11772 3.23253 3.30610 3.58388 3.68582 3.75028 4.09446 4.19670 4.23722 4.58919 4.65056 4.77962 4.79687 5.04175 5.04837 5.10175 5.20467 5.29540 5.36093 5.40406 5.51379 5.58801 5.60799 5.64296 5.71450 5.80087 5.90186 5.92686 6.29576 6.31708 6.78386 7.13285 7.40061 7.51368 7.58384 8.03229 8.38626 9.08418 9.31057 9.84554 10.65511 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.003154 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.985206 B = 8874.826054 C =10111.188401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.180 3.820 3 N -0.489 5.489 4 C 0.153 3.847 5 S 0.033 5.967 6 C -0.121 4.121 7 C 0.454 3.546 8 O -0.577 6.577 9 N -0.435 5.435 10 C 0.109 3.891 11 C -0.307 4.307 12 H 0.100 0.900 13 C 0.032 3.968 14 N -0.879 5.879 15 Si 0.928 3.072 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.082 4.082 20 C 0.260 3.740 21 N -0.403 5.403 22 C 0.025 3.975 23 C -0.125 4.125 24 C -0.163 4.163 25 C -0.108 4.108 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.268 0.732 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -22.223 -2.364 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.037 3.963 3 N -0.202 5.202 4 C -0.099 4.099 5 S 0.278 5.722 6 C -0.273 4.273 7 C 0.240 3.760 8 O -0.462 6.462 9 N -0.153 5.153 10 C -0.035 4.035 11 C -0.435 4.435 12 H 0.118 0.882 13 C -0.172 4.172 14 N -0.518 5.518 15 Si 0.754 3.246 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.096 4.096 20 C -0.056 4.056 21 N -0.078 5.078 22 C 0.014 3.986 23 C -0.182 4.182 24 C -0.169 4.169 25 C -0.165 4.165 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.100 -20.628 -2.284 20.984 hybrid contribution -1.488 -0.059 0.036 1.490 sum -4.588 -20.687 -2.247 21.308 Atomic orbital electron populations 1.20867 0.88208 1.04080 1.03677 1.21408 0.97160 0.87476 0.90242 1.68154 1.06558 1.28709 1.16816 1.23983 0.92460 0.98690 0.94734 1.86696 1.08613 0.89523 1.87365 1.23750 0.99381 0.96645 1.07542 1.19274 0.86852 0.84813 0.85052 1.90567 1.16088 1.83591 1.55992 1.43477 1.04783 1.05120 1.61967 1.21549 0.82476 0.98600 1.00860 1.19730 1.04040 0.80715 1.38995 0.88179 1.25378 0.96200 1.00652 0.94930 1.70005 1.15131 1.33917 1.32712 0.85834 0.78693 0.81731 0.78307 1.19118 1.20566 1.20643 1.16250 0.85465 0.93453 1.14409 1.25111 0.92102 0.94212 0.94172 1.81224 1.11552 1.06573 1.08498 1.20036 0.93222 0.93670 0.91680 1.20986 1.00044 0.93489 1.03634 1.20296 0.92800 0.96865 1.06954 1.20779 0.99901 0.93145 1.02680 0.89656 0.89806 0.90085 0.87362 0.87133 0.92719 0.90461 0.95318 0.92154 0.89593 0.90951 0.89674 0.90818 0.91002 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.33 36.01 0.34 -0.47 16 2 C 0.18 1.90 6.78 -82.54 -0.56 1.34 16 3 N -0.49 -6.78 9.03 -7.93 -0.07 -6.85 16 4 C 0.15 2.31 7.01 -16.38 -0.11 2.19 16 5 S 0.03 0.61 20.20 -107.50 -2.17 -1.56 16 6 C -0.12 -2.33 3.93 36.01 0.14 -2.19 16 7 C 0.45 11.20 7.65 -10.98 -0.08 11.11 16 8 O -0.58 -16.25 15.58 5.55 0.09 -16.17 16 9 N -0.43 -11.13 3.01 -122.19 -0.37 -11.50 16 10 C 0.11 2.38 8.44 59.85 0.51 2.89 16 11 C -0.31 -8.54 9.24 -14.94 -0.14 -8.67 16 12 H 0.10 2.93 7.45 -52.48 -0.39 2.54 16 13 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 14 N -0.88 -23.11 10.83 55.50 0.60 -22.51 16 15 Si 0.93 20.62 29.57 -169.99 -5.03 15.59 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.08 -1.09 5.77 -106.43 -0.61 -1.71 16 20 C 0.26 3.83 12.92 -22.47 -0.29 3.54 16 21 N -0.40 -6.56 18.54 41.84 0.78 -5.79 16 22 C 0.02 0.25 5.95 -103.93 -0.62 -0.37 16 23 C -0.13 -0.87 9.28 36.01 0.33 -0.54 16 24 C -0.16 -1.44 5.89 -104.53 -0.62 -2.06 16 25 C -0.11 -0.54 8.80 36.01 0.32 -0.23 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.39 6.67 -51.93 -0.35 0.04 16 29 H 0.11 1.89 7.39 -51.92 -0.38 1.50 16 30 H 0.11 2.01 8.09 -51.92 -0.42 1.59 16 31 H 0.05 1.22 7.82 -51.93 -0.41 0.81 16 32 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 33 H 0.03 0.52 6.61 -51.93 -0.34 0.17 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.57 7.19 -51.93 -0.37 0.20 16 37 H 0.08 0.40 6.07 -51.93 -0.31 0.08 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.28 6.05 -51.93 -0.31 -0.03 16 40 H 0.07 0.29 6.70 -51.93 -0.35 -0.05 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.82 351.83 -7.18 -40.00 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.82 Total: -2.11 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.49 Total: 5.59 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.94 Total: -46.65 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.17 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.17 Total: -1.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.82 -7.18 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.450 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds