Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28881 * 124.77325 * 2 1 4 4 C 1.32438 * 117.10747 * 180.02562 * 3 2 1 5 5 C 1.48557 * 122.93616 * 180.02562 * 4 3 2 6 6 C 1.36537 * 126.25603 * 185.04970 * 5 4 3 7 7 N 1.35550 * 108.50775 * 180.02562 * 6 5 4 8 8 H 0.97001 * 125.57950 * 180.02562 * 7 6 5 9 9 C 1.37645 * 108.83002 * 0.02562 * 7 6 5 10 10 C 1.46700 * 126.01083 * 179.97438 * 9 7 6 11 11 O 1.21695 * 120.00277 * 174.48339 * 10 9 7 12 12 N 1.34781 * 119.99731 * 354.48408 * 10 9 7 13 13 C 1.46503 * 119.99952 * 8.11530 * 12 10 9 14 14 C 1.46504 * 119.99940 * 188.11708 * 12 10 9 15 15 H 1.09000 * 109.46896 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47269 * 119.99849 * 14 12 10 17 17 C 1.50700 * 109.46857 * 239.99884 * 14 12 10 18 18 H 1.08008 * 120.00073 * 0.02562 * 17 14 12 19 19 C 1.37872 * 120.00024 * 179.97438 * 17 14 12 20 20 N 1.31516 * 120.00220 * 179.97438 * 19 17 14 21 21 Si 1.86807 * 119.99968 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.46953 * 89.99607 * 21 19 17 23 23 H 1.48496 * 109.47030 * 209.99702 * 21 19 17 24 24 H 1.48504 * 109.46848 * 329.99823 * 21 19 17 25 25 C 1.36706 * 107.98255 * 0.22661 * 9 7 6 26 26 C 1.34700 * 114.12909 * 0.27017 * 4 3 2 27 27 S 1.70921 * 124.77468 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46986 * 89.99926 * 1 2 3 29 29 H 1.09001 * 109.46673 * 209.99556 * 1 2 3 30 30 H 1.08996 * 109.46955 * 329.99698 * 1 2 3 31 31 H 1.08002 * 125.74404 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.46780 * 67.38130 * 13 12 10 33 33 H 1.09002 * 109.47150 * 307.37918 * 13 12 10 34 34 H 1.09001 * 109.47053 * 187.38399 * 13 12 10 35 35 H 1.09005 * 109.46753 * 59.99683 * 16 14 12 36 36 H 1.08996 * 109.47268 * 179.97438 * 16 14 12 37 37 H 1.09003 * 109.47062 * 300.00275 * 16 14 12 38 38 H 0.97004 * 120.00100 * 179.97438 * 20 19 17 39 39 H 1.08005 * 126.40603 * 179.75045 * 25 9 7 40 40 H 1.08000 * 126.06107 * 179.70301 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2421 1.0586 0.0000 4 6 3.5546 0.8820 -0.0005 5 6 4.5214 2.0099 0.0000 6 6 5.8796 1.9093 -0.0974 7 7 6.4073 3.1573 -0.0598 8 1 7.3518 3.3725 -0.1111 9 6 5.3835 4.0690 0.0633 10 6 5.5311 5.5266 0.1395 11 8 4.5443 6.2386 0.1465 12 7 6.7598 6.0771 0.2018 13 6 7.9477 5.2403 0.0150 14 6 6.9074 7.5123 0.4565 15 1 5.9219 7.9648 0.5674 16 6 7.7130 7.7224 1.7400 17 6 7.6280 8.1561 -0.7000 18 1 7.9440 7.5562 -1.5407 19 6 7.8828 9.5110 -0.6852 20 7 8.5121 10.0727 -1.6942 21 14 7.3356 10.5486 0.7686 22 1 8.4174 10.5857 1.7853 23 1 7.0412 11.9293 0.3083 24 1 6.1132 9.9553 1.3679 25 6 4.2053 3.3772 0.1076 26 6 3.9364 -0.4098 -0.0068 27 16 2.4819 -1.4040 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 6.4392 0.9901 -0.1891 32 1 7.9832 4.8845 -1.0147 33 1 7.9019 4.3878 0.6927 34 1 8.8419 5.8261 0.2280 35 1 8.6984 7.2699 1.6286 36 1 7.8232 8.7901 1.9292 37 1 7.1918 7.2566 2.5765 38 1 8.6911 11.0261 -1.6840 39 1 3.2165 3.8007 0.2047 40 1 4.9538 -0.7720 -0.0128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = 83.396638 kcal Electronic energy + Delta-G solvation = -23627.108909 eV Core-core repulsion = 20149.873493 eV Total energy + Delta-G solvation = -3477.235416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47782 -39.69795 -38.61629 -35.72659 -33.36290 -32.69331 -31.04072 -30.41807 -29.28858 -27.77897 -26.72566 -25.19120 -24.29381 -22.97308 -21.00609 -20.26630 -19.76421 -19.38324 -17.77958 -16.92792 -16.68683 -15.92794 -15.53487 -15.26944 -15.22921 -14.95087 -14.30485 -13.96998 -13.64934 -13.50530 -13.29052 -13.10130 -12.93643 -12.82632 -12.59470 -12.50582 -12.31621 -12.22290 -11.90751 -11.58994 -11.52428 -11.23178 -10.77503 -10.22054 -9.77412 -9.74514 -9.72097 -9.55079 -9.46427 -9.28259 -8.68843 -8.51082 -7.96396 -7.81044 -6.19334 -4.20812 0.51634 1.20860 1.57712 1.70862 2.16787 3.12877 3.19792 3.34574 3.36701 3.39857 3.65599 3.83704 3.91136 4.31081 4.74003 4.85783 4.93270 5.07520 5.10343 5.14518 5.18238 5.21430 5.25005 5.54008 5.57537 5.59865 5.77999 5.93815 6.09392 6.16234 6.22064 6.28498 6.38957 6.68613 6.74956 6.89556 7.07136 7.22229 7.37254 7.55684 7.68753 8.05131 8.37658 8.74306 8.81841 9.40966 10.93275 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031171 B = 0.002581 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.057712 B =10844.451301 C =11305.694741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.463 5.463 4 C 0.166 3.834 5 C -0.126 4.126 6 C 0.036 3.964 7 N -0.540 5.540 8 H 0.426 0.574 9 C -0.032 4.032 10 C 0.578 3.422 11 O -0.532 6.532 12 N -0.587 5.587 13 C 0.072 3.928 14 C 0.230 3.770 15 H 0.065 0.935 16 C -0.162 4.162 17 C -0.530 4.530 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.262 1.262 25 C -0.082 4.082 26 C -0.272 4.272 27 S 0.100 5.900 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.151 0.849 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -24.707 5.074 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.224 4.224 3 N -0.178 5.178 4 C 0.035 3.965 5 C -0.135 4.135 6 C -0.103 4.103 7 N -0.146 5.146 8 H 0.275 0.725 9 C -0.144 4.144 10 C 0.365 3.635 11 O -0.409 6.409 12 N -0.318 5.318 13 C -0.072 4.072 14 C 0.129 3.871 15 H 0.083 0.917 16 C -0.220 4.220 17 C -0.568 4.568 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.187 1.187 25 C -0.108 4.108 26 C -0.411 4.411 27 S 0.354 5.646 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.169 0.831 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.739 -24.578 4.995 26.247 hybrid contribution 1.124 1.278 0.571 1.795 sum -6.615 -23.300 5.565 24.852 Atomic orbital electron populations 1.20466 0.85181 1.04245 1.03977 1.26987 1.01778 0.90716 1.02964 1.66143 1.04481 1.31226 1.15917 1.18064 0.88166 0.90946 0.99298 1.17244 0.90427 0.91307 1.14551 1.21902 0.93415 0.88623 1.06385 1.43379 1.10060 1.05639 1.55483 0.72537 1.20450 0.88110 0.90144 1.15744 1.17091 0.83870 0.84947 0.77549 1.90807 1.37707 1.61270 1.51078 1.47778 1.04084 1.10572 1.69388 1.21887 0.91320 0.94735 0.99291 1.19356 0.98195 0.76000 0.93570 0.91677 1.22490 1.00757 1.00663 0.98107 1.21137 1.37796 0.93859 1.04015 0.90370 1.24867 0.94221 0.97533 0.96060 1.69871 1.40613 1.11819 1.30772 0.86914 0.79793 0.79496 0.82511 1.20377 1.22022 1.18710 1.21008 0.97343 0.91139 1.01283 1.26737 1.02695 0.95343 1.16316 1.83808 0.98081 1.13082 1.69631 0.89516 0.90162 0.89095 0.81093 0.92624 0.93405 0.88355 0.92585 0.92900 0.94672 0.92353 0.83115 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 36.01 0.38 -0.16 16 2 C 0.05 0.57 7.37 -13.51 -0.10 0.47 16 3 N -0.46 -6.38 10.44 -8.39 -0.09 -6.46 16 4 C 0.17 2.18 6.71 -84.60 -0.57 1.61 16 5 C -0.13 -1.76 6.08 -105.31 -0.64 -2.40 16 6 C 0.04 0.40 11.46 -16.52 -0.19 0.21 16 7 N -0.54 -6.79 5.27 -9.40 -0.05 -6.84 16 8 H 0.43 4.35 4.49 -40.82 -0.18 4.17 16 9 C -0.03 -0.54 6.74 -82.39 -0.55 -1.10 16 10 C 0.58 12.16 7.62 -12.84 -0.10 12.06 16 11 O -0.53 -13.23 16.23 5.19 0.08 -13.15 16 12 N -0.59 -11.98 2.75 -176.79 -0.49 -12.47 16 13 C 0.07 1.08 7.84 59.85 0.47 1.55 16 14 C 0.23 5.49 2.17 -69.08 -0.15 5.35 16 15 H 0.07 1.74 5.98 -51.93 -0.31 1.43 16 16 C -0.16 -3.39 8.66 37.16 0.32 -3.07 16 17 C -0.53 -14.48 8.84 -34.44 -0.30 -14.78 16 18 H 0.08 2.30 7.89 -52.48 -0.41 1.88 16 19 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 20 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 21 Si 0.88 21.63 24.37 -169.99 -4.14 17.49 16 22 H -0.28 -6.44 6.87 56.52 0.39 -6.06 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 25 C -0.08 -1.37 10.46 -39.19 -0.41 -1.78 16 26 C -0.27 -2.73 10.85 29.48 0.32 -2.41 16 27 S 0.10 0.85 23.16 -107.50 -2.49 -1.64 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.17 1.14 7.75 -52.49 -0.41 0.74 16 32 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 33 H 0.05 0.55 5.63 -51.93 -0.29 0.26 16 34 H 0.10 1.52 6.60 -51.93 -0.34 1.18 16 35 H 0.06 1.06 6.89 -51.93 -0.36 0.70 16 36 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.15 2.69 8.06 -52.48 -0.42 2.26 16 40 H 0.18 1.24 7.72 -52.49 -0.41 0.84 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -35.19 340.23 -7.47 -42.66 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.58 Total: 3.58 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.62 Total: -2.39 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.15 Total: -51.68 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.19 -7.47 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.053 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds