Wall clock time and date at job start Tue Mar 31 2020 12:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28881 * 124.77325 * 2 1 4 4 C 1.32438 * 117.10747 * 180.02562 * 3 2 1 5 5 C 1.48557 * 122.93616 * 180.02562 * 4 3 2 6 6 C 1.36537 * 126.25603 * 185.04970 * 5 4 3 7 7 N 1.35550 * 108.50775 * 180.02562 * 6 5 4 8 8 H 0.97001 * 125.57950 * 180.02562 * 7 6 5 9 9 C 1.37645 * 108.83002 * 0.02562 * 7 6 5 10 10 C 1.46700 * 126.01083 * 179.97438 * 9 7 6 11 11 O 1.21695 * 120.00277 * 174.48339 * 10 9 7 12 12 N 1.34781 * 119.99731 * 354.48408 * 10 9 7 13 13 C 1.46503 * 119.99952 * 8.11530 * 12 10 9 14 14 C 1.46504 * 119.99940 * 188.11708 * 12 10 9 15 15 H 1.09000 * 109.46896 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47269 * 119.99849 * 14 12 10 17 17 C 1.50700 * 109.46857 * 239.99884 * 14 12 10 18 18 H 1.08008 * 120.00073 * 0.02562 * 17 14 12 19 19 C 1.37872 * 120.00024 * 179.97438 * 17 14 12 20 20 N 1.31516 * 120.00220 * 179.97438 * 19 17 14 21 21 Si 1.86807 * 119.99968 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.46953 * 89.99607 * 21 19 17 23 23 H 1.48496 * 109.47030 * 209.99702 * 21 19 17 24 24 H 1.48504 * 109.46848 * 329.99823 * 21 19 17 25 25 C 1.36706 * 107.98255 * 0.22661 * 9 7 6 26 26 C 1.34700 * 114.12909 * 0.27017 * 4 3 2 27 27 S 1.70921 * 124.77468 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46986 * 89.99926 * 1 2 3 29 29 H 1.09001 * 109.46673 * 209.99556 * 1 2 3 30 30 H 1.08996 * 109.46955 * 329.99698 * 1 2 3 31 31 H 1.08002 * 125.74404 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.46780 * 67.38130 * 13 12 10 33 33 H 1.09002 * 109.47150 * 307.37918 * 13 12 10 34 34 H 1.09001 * 109.47053 * 187.38399 * 13 12 10 35 35 H 1.09005 * 109.46753 * 59.99683 * 16 14 12 36 36 H 1.08996 * 109.47268 * 179.97438 * 16 14 12 37 37 H 1.09003 * 109.47062 * 300.00275 * 16 14 12 38 38 H 0.97004 * 120.00100 * 179.97438 * 20 19 17 39 39 H 1.08005 * 126.40603 * 179.75045 * 25 9 7 40 40 H 1.08000 * 126.06107 * 179.70301 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2421 1.0586 0.0000 4 6 3.5546 0.8820 -0.0005 5 6 4.5214 2.0099 0.0000 6 6 5.8796 1.9093 -0.0974 7 7 6.4073 3.1573 -0.0598 8 1 7.3518 3.3725 -0.1111 9 6 5.3835 4.0690 0.0633 10 6 5.5311 5.5266 0.1395 11 8 4.5443 6.2386 0.1465 12 7 6.7598 6.0771 0.2018 13 6 7.9477 5.2403 0.0150 14 6 6.9074 7.5123 0.4565 15 1 5.9219 7.9648 0.5674 16 6 7.7130 7.7224 1.7400 17 6 7.6280 8.1561 -0.7000 18 1 7.9440 7.5562 -1.5407 19 6 7.8828 9.5110 -0.6852 20 7 8.5121 10.0727 -1.6942 21 14 7.3356 10.5486 0.7686 22 1 8.4174 10.5857 1.7853 23 1 7.0412 11.9293 0.3083 24 1 6.1132 9.9553 1.3679 25 6 4.2053 3.3772 0.1076 26 6 3.9364 -0.4098 -0.0068 27 16 2.4819 -1.4040 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 6.4392 0.9901 -0.1891 32 1 7.9832 4.8845 -1.0147 33 1 7.9019 4.3878 0.6927 34 1 8.8419 5.8261 0.2280 35 1 8.6984 7.2699 1.6286 36 1 7.8232 8.7901 1.9292 37 1 7.1918 7.2566 2.5765 38 1 8.6911 11.0261 -1.6840 39 1 3.2165 3.8007 0.2047 40 1 4.9538 -0.7720 -0.0128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:09 Heat of formation + Delta-G solvation = 57.968528 kcal Electronic energy + Delta-G solvation = -23628.211555 eV Core-core repulsion = 20149.873493 eV Total energy + Delta-G solvation = -3478.338062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.62092 -40.68354 -40.02753 -37.45072 -34.99184 -33.88787 -32.56941 -31.69963 -30.31277 -28.67609 -28.08913 -27.19488 -25.13708 -24.46305 -21.96430 -21.65931 -21.12420 -20.25695 -19.09966 -18.75846 -17.82216 -17.57625 -17.05128 -16.50590 -16.14041 -15.98938 -15.85552 -15.04296 -14.88681 -14.82505 -14.58165 -14.43640 -14.14602 -14.11245 -14.01552 -13.62761 -13.47829 -13.40019 -13.11600 -13.01455 -12.89481 -12.61124 -12.37401 -12.09983 -11.63515 -11.41934 -11.04627 -10.82786 -10.64858 -10.51304 -10.28985 -9.80063 -9.42119 -8.79602 -8.38419 -6.43574 -0.22377 0.45834 0.52447 0.83250 1.20009 1.23596 1.34586 1.42827 1.95542 2.22156 2.25127 2.27423 2.57855 2.96870 3.18164 3.56580 4.00143 4.03275 4.12845 4.29754 4.32915 4.40216 4.44009 4.47637 4.50883 4.60684 4.66006 4.69450 4.74326 4.81081 4.99673 5.07457 5.09334 5.22433 5.32518 5.41356 5.56568 5.60951 5.79749 6.16152 6.42777 6.53322 6.60406 6.93495 7.10709 7.25244 8.77456 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031171 B = 0.002581 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.057712 B =10844.451301 C =11305.694741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.034 3.966 3 N -0.514 5.514 4 C 0.129 3.871 5 C -0.145 4.145 6 C 0.080 3.920 7 N -0.526 5.526 8 H 0.438 0.562 9 C -0.059 4.059 10 C 0.570 3.430 11 O -0.590 6.590 12 N -0.593 5.593 13 C 0.065 3.935 14 C 0.232 3.768 15 H 0.029 0.971 16 C -0.154 4.154 17 C -0.528 4.528 18 H 0.046 0.954 19 C 0.024 3.976 20 N -0.937 5.937 21 Si 0.940 3.060 22 H -0.249 1.249 23 H -0.296 1.296 24 H -0.265 1.265 25 C -0.095 4.095 26 C -0.263 4.263 27 S 0.162 5.838 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -28.668 6.477 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.245 4.245 3 N -0.230 5.230 4 C -0.001 4.001 5 C -0.153 4.153 6 C -0.060 4.060 7 N -0.132 5.132 8 H 0.289 0.711 9 C -0.171 4.171 10 C 0.361 3.639 11 O -0.471 6.471 12 N -0.323 5.323 13 C -0.077 4.077 14 C 0.128 3.872 15 H 0.047 0.953 16 C -0.212 4.212 17 C -0.566 4.566 18 H 0.064 0.936 19 C -0.175 4.175 20 N -0.577 5.577 21 Si 0.767 3.233 22 H -0.174 1.174 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.123 4.123 26 C -0.402 4.402 27 S 0.416 5.584 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.356 -28.582 6.408 29.973 hybrid contribution 0.627 2.261 0.035 2.347 sum -5.729 -26.321 6.444 27.697 Atomic orbital electron populations 1.20613 0.83463 1.05060 1.04859 1.27503 1.03211 0.91294 1.02451 1.66126 1.05528 1.33490 1.17832 1.18123 0.88057 0.91826 1.02112 1.17488 0.92255 0.90206 1.15371 1.22725 0.92488 0.89342 1.01464 1.43239 1.09759 1.05366 1.54861 0.71099 1.19681 0.89596 0.88393 1.19433 1.17652 0.83212 0.86609 0.76462 1.90755 1.39465 1.63051 1.53860 1.47800 1.05662 1.09735 1.69107 1.22188 0.88937 0.95373 1.01247 1.19044 0.96188 0.78044 0.93880 0.95296 1.22333 1.01507 1.00523 0.96788 1.21329 1.37142 0.93893 1.04243 0.93584 1.25635 0.94348 0.98841 0.98645 1.69994 1.42460 1.12315 1.32901 0.85996 0.80018 0.77329 0.79964 1.17376 1.22351 1.18943 1.20957 0.96262 0.93237 1.01801 1.27182 1.05001 0.94505 1.13508 1.83569 0.96212 1.10747 1.67847 0.88522 0.87538 0.90100 0.75271 0.91529 0.89042 0.88541 0.90434 0.93721 0.92507 0.92167 0.86080 0.77383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.46 71.24 0.75 -0.27 16 2 C 0.03 0.66 7.37 88.54 0.65 1.31 16 3 N -0.51 -14.15 10.44 -180.46 -1.88 -16.04 16 4 C 0.13 3.19 6.71 41.00 0.27 3.46 16 5 C -0.14 -3.83 6.08 -20.31 -0.12 -3.96 16 6 C 0.08 1.43 11.46 83.72 0.96 2.39 16 7 N -0.53 -11.70 5.27 -183.64 -0.97 -12.67 16 8 H 0.44 7.26 4.49 -92.71 -0.42 6.85 16 9 C -0.06 -2.01 6.74 40.08 0.27 -1.74 16 10 C 0.57 24.97 7.62 86.45 0.66 25.63 16 11 O -0.59 -31.54 16.23 -4.33 -0.07 -31.61 16 12 N -0.59 -24.46 2.75 -831.46 -2.29 -26.75 16 13 C 0.06 1.85 7.84 127.77 1.00 2.85 16 14 C 0.23 11.26 2.17 44.24 0.10 11.35 16 15 H 0.03 1.62 5.98 -2.39 -0.01 1.61 16 16 C -0.15 -6.22 8.66 71.98 0.62 -5.60 16 17 C -0.53 -29.71 8.84 25.60 0.23 -29.48 16 18 H 0.05 2.82 7.89 -2.91 -0.02 2.79 16 19 C 0.02 1.41 5.45 84.65 0.46 1.87 16 20 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 21 Si 0.94 45.17 24.37 68.60 1.67 46.85 16 22 H -0.25 -10.77 6.87 99.48 0.68 -10.09 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.26 -12.72 6.53 99.48 0.65 -12.07 16 25 C -0.10 -3.32 10.46 22.52 0.24 -3.08 16 26 C -0.26 -4.28 10.85 67.01 0.73 -3.55 16 27 S 0.16 2.24 23.16 -56.49 -1.31 0.93 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.23 1.35 7.75 -2.91 -0.02 1.33 16 32 H 0.07 1.75 7.67 -2.39 -0.02 1.73 16 33 H 0.09 1.79 5.63 -2.39 -0.01 1.78 16 34 H 0.10 2.81 6.60 -2.39 -0.02 2.79 16 35 H 0.08 2.77 6.89 -2.38 -0.02 2.75 16 36 H 0.04 1.88 3.27 -2.39 -0.01 1.87 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 39 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.21 1.69 7.72 -2.91 -0.02 1.67 16 Total: -1.00 -84.33 340.23 2.86 -81.47 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.60 Total: 13.86 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.81 Total: 1.18 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.84 Total: -112.68 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.07 Total: -31.61 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.85 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.31 Total: 0.93 kcal Total: -84.33 2.86 -81.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.441 kcal (2) G-P(sol) polarization free energy of solvation -84.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds