Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 N 1.30279 * 126.28189 * 89.68657 * 3 2 1 5 5 N 1.28668 * 109.38082 * 179.82778 * 4 3 2 6 6 C 1.30278 * 109.37843 * 0.44727 * 5 4 3 7 7 C 1.50705 * 126.27838 * 179.72935 * 6 5 4 8 8 N 1.46502 * 109.46983 * 90.00085 * 7 6 5 9 9 C 1.39997 * 119.99688 * 179.97438 * 8 7 6 10 10 C 1.38641 * 120.10006 * 0.02562 * 9 8 7 11 11 C 1.38288 * 120.00333 * 179.97438 * 10 9 8 12 12 C 1.38266 * 120.20672 * 0.03948 * 11 10 9 13 13 C 1.38250 * 120.19397 * 0.02562 * 12 11 10 14 14 C 1.38725 * 119.99304 * 359.67907 * 13 12 11 15 15 S 1.76202 * 120.09891 * 180.32011 * 14 13 12 16 16 C 1.81400 * 103.00276 * 0.27523 * 15 14 13 17 17 C 1.50700 * 109.47130 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00286 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99807 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99608 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47125 * 89.99926 * 21 19 17 23 23 H 1.48494 * 109.47036 * 210.00119 * 21 19 17 24 24 H 1.48498 * 109.47077 * 329.99839 * 21 19 17 25 25 O 1.34356 * 126.28330 * 270.00101 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08999 * 109.46594 * 210.00334 * 7 6 5 32 32 H 1.08995 * 109.47046 * 329.99645 * 7 6 5 33 33 H 0.96995 * 119.99885 * 359.97438 * 8 7 6 34 34 H 1.07997 * 119.99846 * 359.97438 * 10 9 8 35 35 H 1.08010 * 119.89833 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.90243 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.99630 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.46754 * 299.99686 * 16 15 14 39 39 H 1.08995 * 109.46736 * 59.99629 * 16 15 14 40 40 H 0.97001 * 119.99759 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2840 2.1495 1.0502 5 7 2.6998 3.3083 0.6761 6 6 2.7186 3.3614 -0.6254 7 6 3.1360 4.5421 -1.4638 8 7 4.5735 4.4642 -1.7355 9 6 5.1959 5.4570 -2.5016 10 6 4.4539 6.5150 -3.0038 11 6 5.0708 7.4949 -3.7599 12 6 6.4271 7.4233 -4.0184 13 6 7.1748 6.3712 -3.5229 14 6 6.5655 5.3870 -2.7583 15 16 7.5173 4.0494 -2.1184 16 6 9.1901 4.4157 -2.7170 17 6 10.1383 3.3435 -2.2454 18 1 9.7715 2.5240 -1.6452 19 6 11.4745 3.4095 -2.5793 20 7 12.3019 2.4735 -2.1681 21 14 12.1091 4.8273 -3.6168 22 1 12.5315 5.9402 -2.7288 23 1 13.2690 4.3700 -4.4233 24 1 11.0312 5.2988 -4.5229 25 8 2.2974 2.1704 -1.0830 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.5871 4.5312 -2.4054 32 1 2.9172 5.4648 -0.9264 33 1 5.0940 3.7248 -1.3845 34 1 3.3941 6.5740 -2.8044 35 1 4.4912 8.3187 -4.1499 36 1 6.9038 8.1910 -4.6098 37 1 8.2340 6.3182 -3.7271 38 1 9.1878 4.4445 -3.8066 39 1 9.5114 5.3820 -2.3286 40 1 13.2418 2.5197 -2.4033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108352345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = 36.172144 kcal Electronic energy + Delta-G solvation = -22904.318035 eV Core-core repulsion = 19425.034812 eV Total energy + Delta-G solvation = -3479.283224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.45498 -40.29650 -37.40307 -37.08102 -35.39880 -35.25884 -32.42797 -32.20265 -31.26156 -30.01750 -27.57483 -25.71066 -24.92340 -24.25159 -23.37917 -22.94598 -22.31671 -19.50001 -18.84711 -18.67642 -18.16624 -17.61648 -17.29222 -16.49464 -16.43945 -15.78145 -15.69697 -15.40667 -15.09375 -14.95006 -14.91716 -14.82288 -14.42707 -14.19436 -13.83308 -13.68491 -13.61159 -13.13074 -13.03314 -12.80100 -12.73219 -12.46233 -12.35851 -12.18737 -11.99092 -11.96394 -11.67080 -11.18523 -10.98411 -10.91815 -10.82632 -10.49871 -8.92891 -8.44011 -7.98624 -6.55097 -0.14348 0.40003 0.65476 0.78132 1.02782 1.12596 1.30312 1.31941 1.42475 1.80249 2.24160 2.39227 2.63563 2.88656 2.90516 3.21955 3.68031 3.90950 4.00010 4.06822 4.14326 4.22661 4.26129 4.34739 4.43071 4.48289 4.50641 4.54041 4.62988 4.69385 4.70621 4.89705 4.95744 4.97525 5.19837 5.23931 5.25409 5.46335 5.69759 5.85909 5.98497 6.25150 6.41020 6.48089 7.06327 7.08067 8.71730 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.003198 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.055434 B = 8754.304977 C =10605.969001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C 0.182 3.818 4 N -0.325 5.325 5 N -0.295 5.295 6 C 0.148 3.852 7 C 0.231 3.769 8 N -0.751 5.751 9 C 0.221 3.779 10 C -0.177 4.177 11 C -0.074 4.074 12 C -0.158 4.158 13 C -0.111 4.111 14 C -0.167 4.167 15 S -0.176 6.176 16 C 0.046 3.954 17 C -0.536 4.536 18 H 0.037 0.963 19 C 0.024 3.976 20 N -0.936 5.936 21 Si 0.950 3.050 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.245 1.245 25 O -0.222 6.222 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.396 0.604 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.337 4.776 -3.468 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.029 4.029 4 N -0.171 5.171 5 N -0.142 5.142 6 C -0.065 4.065 7 C 0.107 3.893 8 N -0.384 5.384 9 C 0.115 3.885 10 C -0.201 4.201 11 C -0.095 4.095 12 C -0.179 4.179 13 C -0.136 4.136 14 C -0.283 4.283 15 S 0.067 5.933 16 C -0.102 4.102 17 C -0.574 4.574 18 H 0.056 0.944 19 C -0.177 4.177 20 N -0.574 5.574 21 Si 0.771 3.229 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.168 1.168 25 O -0.101 6.101 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.230 0.770 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.513 4.086 -1.497 26.868 hybrid contribution 1.700 0.316 -1.654 2.392 sum -24.814 4.402 -3.151 25.397 Atomic orbital electron populations 1.21795 0.91058 1.04954 1.02527 1.20604 0.98239 0.80554 1.07600 1.29128 0.96185 0.98876 0.78741 1.74391 1.17015 0.98781 1.26872 1.74372 1.15684 1.13817 1.10323 1.28171 0.99218 0.87706 0.91390 1.19870 0.81766 0.89300 0.98407 1.44652 1.07340 1.27638 1.58807 1.17358 0.88813 0.90064 0.92312 1.20935 1.00879 0.94551 1.03686 1.21314 0.93985 0.98280 0.95873 1.21144 0.95172 0.98483 1.03099 1.21140 0.99749 0.94849 0.97817 1.21480 0.95883 1.01911 1.09069 1.85039 1.06774 1.32380 1.69106 1.21357 0.90690 0.99314 0.98857 1.20607 0.93087 1.08773 1.34949 0.94426 1.25864 0.96145 0.99160 0.96528 1.70007 1.05039 1.35781 1.46592 0.85669 0.78958 0.78845 0.79392 1.18513 1.19824 1.16806 1.84827 1.63557 1.23124 1.38608 0.92157 0.92543 0.87836 0.85744 0.86283 0.85802 0.85473 0.76964 0.82190 0.82049 0.84071 0.87380 0.93664 0.93984 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.47 16 2 C -0.03 -0.36 6.56 29.85 0.20 -0.17 16 3 C 0.18 3.93 7.73 88.34 0.68 4.61 16 4 N -0.32 -9.11 12.22 -165.51 -2.02 -11.14 16 5 N -0.29 -8.64 12.22 -165.49 -2.02 -10.67 16 6 C 0.15 3.54 7.85 88.34 0.69 4.23 16 7 C 0.23 4.24 5.54 85.63 0.47 4.71 16 8 N -0.75 -20.03 5.68 -342.55 -1.94 -21.97 16 9 C 0.22 6.30 6.66 38.24 0.25 6.56 16 10 C -0.18 -3.61 9.31 22.38 0.21 -3.40 16 11 C -0.07 -1.42 10.04 22.29 0.22 -1.19 16 12 C -0.16 -3.87 10.04 22.28 0.22 -3.64 16 13 C -0.11 -3.67 9.36 22.39 0.21 -3.46 16 14 C -0.17 -5.96 6.12 22.70 0.14 -5.82 16 15 S -0.18 -7.77 20.37 -56.49 -1.15 -8.92 16 16 C 0.05 2.26 3.16 71.24 0.23 2.49 16 17 C -0.54 -31.76 9.68 25.60 0.25 -31.51 16 18 H 0.04 2.50 7.96 -2.91 -0.02 2.48 16 19 C 0.02 1.38 5.47 84.66 0.46 1.85 16 20 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 21 Si 0.95 43.03 27.47 68.60 1.88 44.92 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 25 O -0.22 -5.11 10.87 -3.57 -0.04 -5.15 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.12 1.50 7.95 -2.39 -0.02 1.48 16 32 H 0.13 1.83 7.95 -2.39 -0.02 1.81 16 33 H 0.40 12.68 7.01 -92.71 -0.65 12.03 16 34 H 0.16 1.99 6.74 -2.91 -0.02 1.97 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.11 3.85 5.88 -2.91 -0.02 3.83 16 38 H 0.05 2.17 6.79 -2.39 -0.02 2.15 16 39 H 0.04 2.00 7.19 -2.39 -0.02 1.99 16 40 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.10 353.57 0.33 -76.77 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.37 Total: 19.25 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.95 Total: -25.22 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -5.69 Total: -101.65 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.04 Total: -5.15 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.15 Total: -8.92 kcal Total: -77.10 0.33 -76.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108352345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.945 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds