Wall clock time and date at job start Tue Mar 31 2020 12:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47336 * 2 1 4 4 N 1.29940 * 126.29098 * 269.97707 * 3 2 1 5 5 O 1.21304 * 110.25130 * 179.72147 * 4 3 2 6 6 C 1.33638 * 109.80946 * 0.47132 * 5 4 3 7 7 C 1.50708 * 126.54678 * 179.79733 * 6 5 4 8 8 N 1.46500 * 109.47181 * 269.68618 * 7 6 5 9 9 C 1.40001 * 120.00046 * 180.02562 * 8 7 6 10 10 C 1.38651 * 120.09614 * 0.02562 * 9 8 7 11 11 C 1.38291 * 120.00120 * 180.30177 * 10 9 8 12 12 C 1.38267 * 120.20126 * 359.43679 * 11 10 9 13 13 C 1.38246 * 120.19975 * 0.56506 * 12 11 10 14 14 C 1.38726 * 119.99334 * 359.71724 * 13 12 11 15 15 S 1.76200 * 120.10011 * 180.02562 * 14 13 12 16 16 C 1.81394 * 103.00111 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47312 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00194 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99894 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99862 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47168 * 89.99858 * 21 19 17 23 23 H 1.48506 * 109.46757 * 210.00168 * 21 19 17 24 24 H 1.48493 * 109.46999 * 329.99556 * 21 19 17 25 25 N 1.31125 * 106.90211 * 359.53626 * 6 5 4 26 26 H 1.09000 * 109.46937 * 59.99838 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46873 * 299.99472 * 1 2 3 29 29 H 1.09000 * 109.47381 * 240.00452 * 2 1 3 30 30 H 1.09005 * 109.47394 * 120.00144 * 2 1 3 31 31 H 1.09004 * 109.46427 * 149.68612 * 7 6 5 32 32 H 1.09003 * 109.47225 * 29.69044 * 7 6 5 33 33 H 0.96999 * 120.00226 * 0.02562 * 8 7 6 34 34 H 1.08002 * 119.99588 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.89115 * 179.70564 * 11 10 9 36 36 H 1.08001 * 119.89857 * 180.28025 * 12 11 10 37 37 H 1.08005 * 120.00239 * 179.74332 * 13 12 11 38 38 H 1.08998 * 109.47417 * 300.00056 * 16 15 14 39 39 H 1.08996 * 109.47145 * 60.00136 * 16 15 14 40 40 H 0.97001 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1458 -1.0473 5 8 2.6725 3.2468 -0.7122 6 6 2.7071 3.3278 0.6213 7 6 3.1297 4.5224 1.4371 8 7 4.5687 4.4486 1.7018 9 6 5.1958 5.4540 2.4474 10 6 4.4567 6.5202 2.9368 11 6 5.0792 7.5154 3.6678 12 6 6.4363 7.4456 3.9230 13 6 7.1813 6.3863 3.4391 14 6 6.5663 5.3864 2.6999 15 16 7.5130 4.0347 2.0823 16 6 9.1885 4.4086 2.6680 17 6 10.1331 3.3263 2.2127 18 1 9.7625 2.4966 1.6289 19 6 11.4704 3.3951 2.5413 20 7 12.2947 2.4508 2.1435 21 14 12.1111 4.8297 3.5517 22 1 12.0286 4.4940 4.9959 23 1 13.5249 5.1001 3.1862 24 1 11.2894 6.0354 3.2760 25 7 2.2977 2.1713 1.0842 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.5862 4.5276 2.3820 32 1 2.9080 5.4360 0.8854 33 1 5.0871 3.7032 1.3604 34 1 3.3956 6.5756 2.7433 35 1 4.5027 8.3475 4.0441 36 1 6.9167 8.2232 4.4983 37 1 8.2420 6.3371 3.6368 38 1 9.5107 5.3667 2.2602 39 1 9.1901 4.4583 3.7569 40 1 13.2354 2.4991 2.3750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108352780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:29 Heat of formation + Delta-G solvation = 90.566146 kcal Electronic energy + Delta-G solvation = -22925.716686 eV Core-core repulsion = 19448.792164 eV Total energy + Delta-G solvation = -3476.924523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.88703 -39.21731 -36.71096 -36.11937 -33.83752 -33.15033 -31.91875 -30.94220 -29.70420 -29.25919 -26.70739 -25.41741 -23.64526 -22.91212 -22.65240 -21.49319 -21.04816 -18.45293 -18.09209 -17.54127 -16.87524 -16.57011 -16.14162 -15.27892 -15.06450 -14.64882 -14.60251 -14.35180 -14.01996 -13.88611 -13.38696 -13.35625 -13.29363 -13.10242 -12.75050 -12.50749 -12.37967 -12.12357 -11.81181 -11.68709 -11.61939 -11.26898 -11.10488 -10.89557 -10.45656 -10.27543 -10.23796 -10.17137 -9.75127 -9.29393 -9.20660 -8.77479 -7.75041 -6.53856 -6.25994 -4.29843 0.74930 1.53658 1.75231 1.88172 2.32706 2.41228 3.16707 3.22884 3.24159 3.24785 3.35247 3.59772 3.71694 4.00530 4.24255 4.46781 4.74149 4.77557 4.84172 4.98242 5.01302 5.05289 5.10972 5.20362 5.40042 5.43543 5.45236 5.54449 5.64214 5.67392 5.77444 5.80129 6.05844 6.28567 6.45581 6.51733 6.56142 6.77761 6.90285 7.28360 7.31689 7.59464 7.86337 8.19827 8.74191 9.28818 10.85801 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003204 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.423054 B = 8737.098084 C =10582.320927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.170 3.830 4 N -0.377 5.377 5 O 0.088 5.912 6 C 0.167 3.833 7 C 0.227 3.773 8 N -0.743 5.743 9 C 0.225 3.775 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.153 4.153 13 C -0.093 4.093 14 C -0.137 4.137 15 S -0.140 6.140 16 C 0.036 3.964 17 C -0.520 4.520 18 H 0.084 0.916 19 C 0.083 3.917 20 N -0.888 5.888 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.264 1.264 25 N -0.459 5.459 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.409 0.591 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.788 4.794 -0.407 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.103 4.103 4 N -0.083 5.083 5 O 0.028 5.972 6 C -0.054 4.054 7 C 0.101 3.899 8 N -0.379 5.379 9 C 0.118 3.882 10 C -0.208 4.208 11 C -0.114 4.114 12 C -0.174 4.174 13 C -0.118 4.118 14 C -0.253 4.253 15 S 0.106 5.894 16 C -0.112 4.112 17 C -0.559 4.559 18 H 0.102 0.898 19 C -0.122 4.122 20 N -0.525 5.525 21 Si 0.703 3.297 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.189 1.189 25 N -0.194 5.194 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.253 3.107 -1.644 23.518 hybrid contribution 1.234 1.602 1.171 2.337 sum -22.019 4.709 -0.473 22.522 Atomic orbital electron populations 1.21734 0.93221 1.02913 1.02594 1.19975 0.96795 0.85488 1.05068 1.25963 1.00307 1.00684 0.83301 1.74664 1.17070 0.92653 1.23887 1.85335 1.60312 1.26964 1.24569 1.28647 0.97449 0.96924 0.82388 1.19548 0.83869 0.89526 0.96956 1.44449 1.05703 1.27156 1.60634 1.17112 0.89616 0.88864 0.92589 1.20454 0.99115 0.95787 1.05425 1.20775 0.94563 0.97882 0.98146 1.20832 0.94265 0.99045 1.03282 1.21097 1.00022 0.93544 0.97121 1.21578 0.95043 1.02086 1.06620 1.85122 1.07681 1.27685 1.68945 1.21677 0.89553 1.01284 0.98701 1.20411 0.91580 1.07631 1.36304 0.89808 1.24831 0.96131 0.96045 0.95241 1.69855 1.04489 1.33048 1.45100 0.86824 0.78793 0.83115 0.80988 1.19704 1.20652 1.18877 1.71935 1.16496 1.01515 1.29425 0.92373 0.90931 0.91967 0.88879 0.88309 0.87658 0.88468 0.75333 0.86125 0.86352 0.86481 0.85664 0.93933 0.94403 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.03 -0.29 6.56 -27.88 -0.18 -0.47 16 3 C 0.17 2.02 7.47 -156.37 -1.17 0.86 16 4 N -0.38 -4.89 12.16 30.90 0.38 -4.52 16 5 O 0.09 1.09 11.31 18.11 0.20 1.29 16 6 C 0.17 1.89 7.88 -13.06 -0.10 1.79 16 7 C 0.23 2.12 5.54 -5.19 -0.03 2.09 16 8 N -0.74 -9.72 5.68 -59.61 -0.34 -10.06 16 9 C 0.22 3.28 6.66 -83.49 -0.56 2.73 16 10 C -0.18 -2.20 9.31 -39.41 -0.37 -2.57 16 11 C -0.09 -1.09 10.04 -39.55 -0.40 -1.49 16 12 C -0.15 -2.09 10.04 -39.57 -0.40 -2.49 16 13 C -0.09 -1.55 9.36 -39.40 -0.37 -1.92 16 14 C -0.14 -2.40 6.12 -38.92 -0.24 -2.64 16 15 S -0.14 -2.90 20.37 -107.50 -2.19 -5.09 16 16 C 0.04 0.84 3.16 36.01 0.11 0.96 16 17 C -0.52 -14.57 9.68 -34.44 -0.33 -14.90 16 18 H 0.08 2.57 7.96 -52.48 -0.42 2.15 16 19 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 20 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 21 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 25 N -0.46 -5.74 11.55 -9.87 -0.11 -5.85 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.11 0.83 7.95 -51.93 -0.41 0.41 16 32 H 0.10 0.67 7.96 -51.93 -0.41 0.25 16 33 H 0.41 6.10 7.01 -40.82 -0.29 5.81 16 34 H 0.12 1.05 6.74 -52.49 -0.35 0.70 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 2.21 5.88 -52.48 -0.31 1.90 16 38 H 0.04 0.99 6.81 -51.93 -0.35 0.64 16 39 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -31.60 353.04 -9.44 -41.03 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.04 Total: 4.13 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -3.76 Total: -16.46 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.70 Total: -46.13 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.29 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.19 Total: -5.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.60 -9.44 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108352780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.601 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds