Wall clock time and date at job start Tue Mar 31 2020 12:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47336 * 2 1 4 4 N 1.29940 * 126.29098 * 269.97707 * 3 2 1 5 5 O 1.21304 * 110.25130 * 179.72147 * 4 3 2 6 6 C 1.33638 * 109.80946 * 0.47132 * 5 4 3 7 7 C 1.50708 * 126.54678 * 179.79733 * 6 5 4 8 8 N 1.46500 * 109.47181 * 269.68618 * 7 6 5 9 9 C 1.40001 * 120.00046 * 180.02562 * 8 7 6 10 10 C 1.38651 * 120.09614 * 0.02562 * 9 8 7 11 11 C 1.38291 * 120.00120 * 180.30177 * 10 9 8 12 12 C 1.38267 * 120.20126 * 359.43679 * 11 10 9 13 13 C 1.38246 * 120.19975 * 0.56506 * 12 11 10 14 14 C 1.38726 * 119.99334 * 359.71724 * 13 12 11 15 15 S 1.76200 * 120.10011 * 180.02562 * 14 13 12 16 16 C 1.81394 * 103.00111 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47312 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00194 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99894 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99862 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47168 * 89.99858 * 21 19 17 23 23 H 1.48506 * 109.46757 * 210.00168 * 21 19 17 24 24 H 1.48493 * 109.46999 * 329.99556 * 21 19 17 25 25 N 1.31125 * 106.90211 * 359.53626 * 6 5 4 26 26 H 1.09000 * 109.46937 * 59.99838 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46873 * 299.99472 * 1 2 3 29 29 H 1.09000 * 109.47381 * 240.00452 * 2 1 3 30 30 H 1.09005 * 109.47394 * 120.00144 * 2 1 3 31 31 H 1.09004 * 109.46427 * 149.68612 * 7 6 5 32 32 H 1.09003 * 109.47225 * 29.69044 * 7 6 5 33 33 H 0.96999 * 120.00226 * 0.02562 * 8 7 6 34 34 H 1.08002 * 119.99588 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.89115 * 179.70564 * 11 10 9 36 36 H 1.08001 * 119.89857 * 180.28025 * 12 11 10 37 37 H 1.08005 * 120.00239 * 179.74332 * 13 12 11 38 38 H 1.08998 * 109.47417 * 300.00056 * 16 15 14 39 39 H 1.08996 * 109.47145 * 60.00136 * 16 15 14 40 40 H 0.97001 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1458 -1.0473 5 8 2.6725 3.2468 -0.7122 6 6 2.7071 3.3278 0.6213 7 6 3.1297 4.5224 1.4371 8 7 4.5687 4.4486 1.7018 9 6 5.1958 5.4540 2.4474 10 6 4.4567 6.5202 2.9368 11 6 5.0792 7.5154 3.6678 12 6 6.4363 7.4456 3.9230 13 6 7.1813 6.3863 3.4391 14 6 6.5663 5.3864 2.6999 15 16 7.5130 4.0347 2.0823 16 6 9.1885 4.4086 2.6680 17 6 10.1331 3.3263 2.2127 18 1 9.7625 2.4966 1.6289 19 6 11.4704 3.3951 2.5413 20 7 12.2947 2.4508 2.1435 21 14 12.1111 4.8297 3.5517 22 1 12.0286 4.4940 4.9959 23 1 13.5249 5.1001 3.1862 24 1 11.2894 6.0354 3.2760 25 7 2.2977 2.1713 1.0842 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.5862 4.5276 2.3820 32 1 2.9080 5.4360 0.8854 33 1 5.0871 3.7032 1.3604 34 1 3.3956 6.5756 2.7433 35 1 4.5027 8.3475 4.0441 36 1 6.9167 8.2232 4.4983 37 1 8.2420 6.3371 3.6368 38 1 9.5107 5.3667 2.2602 39 1 9.1901 4.4583 3.7569 40 1 13.2354 2.4991 2.3750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108352780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:28 Heat of formation + Delta-G solvation = 69.650905 kcal Electronic energy + Delta-G solvation = -22926.623639 eV Core-core repulsion = 19448.792164 eV Total energy + Delta-G solvation = -3477.831476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.79912 -40.26639 -37.58653 -37.04587 -35.29832 -34.65711 -32.72952 -32.18032 -31.33391 -30.49883 -27.64499 -26.17094 -24.93115 -24.43712 -23.70652 -22.55908 -21.96449 -19.52385 -19.27656 -18.86088 -18.38542 -17.64125 -17.30974 -16.48782 -16.00934 -15.84902 -15.74895 -15.35987 -15.08225 -14.91943 -14.90596 -14.80495 -14.39072 -14.19202 -14.08559 -13.79069 -13.38508 -13.01111 -12.73334 -12.72255 -12.60512 -12.40011 -12.38194 -12.17140 -12.04671 -11.94553 -11.64805 -11.17603 -11.13752 -10.96933 -10.89770 -10.46317 -8.88763 -8.43134 -7.94902 -6.54101 -0.14900 0.43693 0.69275 0.80758 1.00371 1.30930 1.32720 1.43213 1.57012 1.82822 2.24954 2.40533 2.55738 2.89141 2.89771 2.94688 3.67528 3.96434 4.10944 4.13649 4.19035 4.26170 4.33098 4.41292 4.51446 4.53132 4.57472 4.64694 4.66674 4.74031 4.81936 4.89195 4.97331 5.01110 5.20424 5.22602 5.27962 5.49863 5.73500 5.89453 5.99422 6.29846 6.45344 6.49214 6.96915 7.09123 8.72600 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003204 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.423054 B = 8737.098084 C =10582.320927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 C 0.165 3.835 4 N -0.400 5.400 5 O 0.079 5.921 6 C 0.173 3.827 7 C 0.226 3.774 8 N -0.750 5.750 9 C 0.224 3.776 10 C -0.175 4.175 11 C -0.074 4.074 12 C -0.159 4.159 13 C -0.112 4.112 14 C -0.167 4.167 15 S -0.174 6.174 16 C 0.045 3.955 17 C -0.535 4.535 18 H 0.038 0.962 19 C 0.023 3.977 20 N -0.936 5.936 21 Si 0.950 3.050 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.245 1.245 25 N -0.480 5.480 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.396 0.604 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.460 7.805 1.167 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.107 4.107 4 N -0.108 5.108 5 O 0.021 5.979 6 C -0.049 4.049 7 C 0.102 3.898 8 N -0.384 5.384 9 C 0.117 3.883 10 C -0.199 4.199 11 C -0.095 4.095 12 C -0.180 4.180 13 C -0.136 4.136 14 C -0.284 4.284 15 S 0.069 5.931 16 C -0.103 4.103 17 C -0.574 4.574 18 H 0.056 0.944 19 C -0.177 4.177 20 N -0.575 5.575 21 Si 0.771 3.229 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.168 1.168 25 N -0.215 5.215 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.231 0.769 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.970 6.152 -0.066 26.689 hybrid contribution 1.889 0.660 0.657 2.106 sum -24.082 6.812 0.591 25.034 Atomic orbital electron populations 1.21696 0.91755 1.04198 1.02064 1.20195 0.97987 0.83805 1.05704 1.26583 0.99476 1.01746 0.82932 1.74654 1.18295 0.93138 1.24666 1.85301 1.60563 1.26892 1.25117 1.29071 0.96427 0.97201 0.82157 1.19969 0.81761 0.89899 0.98214 1.44600 1.07143 1.26391 1.60242 1.17329 0.88629 0.89845 0.92514 1.20953 1.00933 0.94153 1.03845 1.21312 0.93880 0.98369 0.95950 1.21130 0.95276 0.98441 1.03180 1.21126 0.99651 0.94771 0.98101 1.21478 0.95969 1.01436 1.09483 1.85013 1.06671 1.31056 1.70402 1.21352 0.90784 0.99468 0.98692 1.20615 0.93061 1.07722 1.35954 0.94420 1.25862 0.96207 0.99251 0.96402 1.70005 1.05117 1.35528 1.46832 0.85671 0.78326 0.79576 0.79308 1.18447 1.19923 1.16822 1.71952 1.17414 1.02164 1.29921 0.92884 0.88741 0.92424 0.88145 0.87732 0.85308 0.85098 0.76904 0.81907 0.82127 0.84271 0.87544 0.93759 0.93962 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.04 -0.62 6.56 29.85 0.20 -0.43 16 3 C 0.17 3.89 7.47 138.46 1.03 4.92 16 4 N -0.40 -10.37 12.16 -60.33 -0.73 -11.10 16 5 O 0.08 1.91 11.31 74.88 0.85 2.76 16 6 C 0.17 3.69 7.88 88.38 0.70 4.39 16 7 C 0.23 3.54 5.54 85.64 0.47 4.01 16 8 N -0.75 -18.45 5.68 -342.52 -1.94 -20.40 16 9 C 0.22 6.04 6.66 38.24 0.25 6.29 16 10 C -0.17 -3.33 9.31 22.38 0.21 -3.12 16 11 C -0.07 -1.36 10.04 22.29 0.22 -1.14 16 12 C -0.16 -3.81 10.04 22.28 0.22 -3.58 16 13 C -0.11 -3.64 9.36 22.39 0.21 -3.43 16 14 C -0.17 -5.80 6.12 22.70 0.14 -5.67 16 15 S -0.17 -7.56 20.37 -56.49 -1.15 -8.71 16 16 C 0.05 2.21 3.16 71.24 0.22 2.43 16 17 C -0.53 -31.57 9.68 25.60 0.25 -31.32 16 18 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 19 C 0.02 1.36 5.47 84.66 0.46 1.82 16 20 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 21 Si 0.95 42.91 27.47 68.60 1.88 44.80 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 25 N -0.48 -11.65 11.55 -303.21 -3.50 -15.16 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.13 1.47 7.95 -2.38 -0.02 1.45 16 32 H 0.13 1.21 7.96 -2.39 -0.02 1.19 16 33 H 0.40 11.90 7.01 -92.71 -0.65 11.25 16 34 H 0.16 1.72 6.74 -2.91 -0.02 1.70 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.11 3.75 5.88 -2.91 -0.02 3.73 16 38 H 0.04 2.11 6.81 -2.39 -0.02 2.10 16 39 H 0.04 1.99 7.17 -2.39 -0.02 1.98 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -73.95 353.04 1.38 -72.57 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.37 Total: 18.88 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 5.31 Total: -25.82 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -5.88 Total: -104.48 kcal Atomic # 8 Polarization: 1.91 SS G_CDS: 0.85 Total: 2.76 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.15 Total: -8.71 kcal Total: -73.95 1.38 -72.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108352780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.226 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds