Wall clock time and date at job start Tue Mar 31 2020 12:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47102 * 2 1 4 4 C 1.37469 * 122.44952 * 265.31577 * 3 2 1 5 5 C 1.36668 * 113.29063 * 180.20145 * 4 3 2 6 6 C 1.46560 * 125.45796 * 179.80402 * 5 4 3 7 7 O 1.21715 * 120.00057 * 359.71324 * 6 5 4 8 8 N 1.34775 * 119.99755 * 179.71879 * 6 5 4 9 9 C 1.40082 * 119.99777 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97848 * 359.96965 * 9 8 6 11 11 C 1.35230 * 107.86833 * 179.75958 * 10 9 8 12 12 N 1.34966 * 107.86620 * 0.39274 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.86985 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31237 * 125.97517 * 179.97438 * 9 8 6 23 23 S 1.75829 * 109.08115 * 359.53387 * 5 4 3 24 24 C 1.33814 * 122.44487 * 85.00311 * 3 2 1 25 25 C 1.50698 * 124.52341 * 0.03891 * 24 3 2 26 26 H 1.09001 * 109.47030 * 59.99360 * 1 2 3 27 27 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47190 * 299.99569 * 1 2 3 29 29 H 1.09003 * 109.47190 * 240.00430 * 2 1 3 30 30 H 1.08996 * 109.47427 * 120.00361 * 2 1 3 31 31 H 1.07998 * 123.35855 * 0.02562 * 4 3 2 32 32 H 0.96999 * 119.99974 * 359.97438 * 8 6 5 33 33 H 1.08003 * 126.06367 * 0.02562 * 10 9 8 34 34 H 1.08000 * 126.07068 * 180.26198 * 11 10 9 35 35 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 36 36 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 38 38 H 1.08999 * 109.47463 * 179.97438 * 25 24 3 39 39 H 1.09004 * 109.47366 * 300.00666 * 25 24 3 40 40 H 1.09002 * 109.46883 * 60.00272 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3675 2.0847 -1.1562 5 6 2.8046 3.3613 -0.9390 6 6 3.2329 4.3017 -1.9783 7 8 3.2212 3.9633 -3.1475 8 7 3.6399 5.5410 -1.6395 9 6 4.0488 6.4400 -2.6329 10 6 4.0854 6.1837 -4.0130 11 6 4.5310 7.3010 -4.6309 12 7 4.7769 8.2288 -3.6821 13 6 5.2771 9.5860 -3.9146 14 6 4.3328 10.5827 -3.2932 15 1 3.4488 10.2394 -2.7765 16 6 4.5975 11.9327 -3.3845 17 7 5.6768 12.3504 -4.0092 18 14 3.4274 13.1681 -2.6137 19 1 3.9374 14.5436 -2.8443 20 1 2.0836 13.0286 -3.2304 21 1 3.3308 12.9142 -1.1538 22 7 4.4647 7.6691 -2.4365 23 16 2.7635 3.6972 0.7864 24 6 2.1789 2.1305 1.1250 25 6 1.8693 1.6146 2.5066 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.2954 1.6408 -2.1381 32 1 3.6490 5.8107 -0.7078 33 1 3.8032 5.2597 -4.4958 34 1 4.6679 7.4277 -5.6947 35 1 5.3449 9.7695 -4.9869 36 1 6.2643 9.6914 -3.4648 37 1 6.2845 11.7090 -4.4092 38 1 2.0769 2.3935 3.2403 39 1 0.8176 1.3334 2.5623 40 1 2.4898 0.7435 2.7167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117712269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:50 Heat of formation + Delta-G solvation = 62.883373 kcal Electronic energy + Delta-G solvation = -22903.750464 eV Core-core repulsion = 19425.625526 eV Total energy + Delta-G solvation = -3478.124938 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79946 -39.63208 -38.65746 -34.90582 -33.71729 -33.21035 -31.92830 -30.92692 -29.42258 -27.74681 -26.17145 -24.30004 -24.02801 -22.83769 -21.41428 -20.46748 -19.82332 -18.83338 -17.91358 -17.20132 -16.90574 -16.13557 -15.50170 -15.30541 -15.01933 -14.50488 -14.45985 -14.08070 -13.85805 -13.78450 -13.61306 -13.20863 -13.06523 -12.75348 -12.49461 -12.39600 -12.29528 -11.98839 -11.84239 -11.75579 -11.32185 -11.17670 -10.99129 -10.82724 -10.52094 -10.16575 -10.15444 -9.76192 -9.03408 -8.92548 -8.70624 -8.58851 -8.24121 -7.55672 -6.58897 -4.32971 0.23111 1.16938 1.58219 2.01991 2.58336 2.64836 2.99992 3.37525 3.39230 3.57980 3.68748 3.75013 4.38565 4.40301 4.50004 4.68058 4.74507 4.88695 4.97822 5.10065 5.14825 5.24293 5.27550 5.40235 5.43885 5.53919 5.55617 5.65594 5.70008 5.85779 6.03204 6.11663 6.16534 6.37865 6.47534 6.56670 6.73465 7.26104 7.42547 7.67878 7.80912 8.09700 8.33142 8.50436 8.60481 9.35158 10.78696 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002485 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.694578 B =11264.563721 C =12014.968081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.122 4.122 4 C -0.041 4.041 5 C -0.264 4.264 6 C 0.598 3.402 7 O -0.507 6.507 8 N -0.626 5.626 9 C 0.259 3.741 10 C -0.283 4.283 11 C 0.052 3.948 12 N -0.316 5.316 13 C 0.249 3.751 14 C -0.608 4.608 15 H 0.063 0.937 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.299 5.299 23 S 0.203 5.797 24 C -0.194 4.194 25 C -0.084 4.084 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.408 0.592 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.267 0.733 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -24.361 10.797 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.384 4.384 6 C 0.384 3.616 7 O -0.382 6.382 8 N -0.273 5.273 9 C 0.006 3.994 10 C -0.314 4.314 11 C -0.098 4.098 12 N -0.098 5.098 13 C 0.131 3.869 14 C -0.646 4.646 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.540 5.540 18 Si 0.904 3.096 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.211 1.211 22 N -0.130 5.130 23 S 0.473 5.527 24 C -0.314 4.314 25 C -0.142 4.142 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.243 0.757 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.412 -20.647 11.943 24.977 hybrid contribution -0.210 -3.268 -1.257 3.507 sum -7.622 -23.914 10.686 27.280 Atomic orbital electron populations 1.21741 0.94743 1.01698 1.02344 1.20229 0.96008 0.90989 1.02932 1.18632 1.05017 0.98598 0.91252 1.20598 0.95344 0.91518 0.99937 1.24300 1.17001 1.00189 0.96911 1.16791 0.77153 0.80107 0.87563 1.90768 1.52995 1.76394 1.18036 1.42242 1.64451 1.11515 1.09113 1.19012 1.01656 0.89949 0.88755 1.21533 1.17000 1.01632 0.91282 1.22569 1.01349 0.89522 0.96344 1.48807 1.46847 1.12432 1.01673 1.19779 0.95807 0.73746 0.97582 1.22099 1.10419 0.92431 1.39683 0.91840 1.25928 0.98969 0.97616 0.95675 1.70853 1.11545 1.38279 1.33289 0.83420 0.74629 0.75501 0.76086 1.20507 1.21226 1.21125 1.77365 1.24212 1.06436 1.05025 1.83137 1.60155 1.10777 0.98640 1.24050 1.07526 0.99334 1.00442 1.20384 1.02648 1.01437 0.89721 0.92366 0.92315 0.92639 0.90791 0.90962 0.82839 0.75679 0.82047 0.81347 0.93544 0.94706 0.92277 0.91248 0.90219 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.06 -0.40 5.83 -27.88 -0.16 -0.56 16 3 C -0.12 -1.08 5.04 -106.45 -0.54 -1.61 16 4 C -0.04 -0.44 9.78 -40.43 -0.40 -0.84 16 5 C -0.26 -3.27 6.45 -36.80 -0.24 -3.51 16 6 C 0.60 9.52 7.75 -12.91 -0.10 9.42 16 7 O -0.51 -9.30 13.96 5.18 0.07 -9.23 16 8 N -0.63 -10.54 5.44 -12.35 -0.07 -10.61 16 9 C 0.26 5.40 8.11 -154.45 -1.25 4.15 16 10 C -0.28 -5.74 9.60 -39.83 -0.38 -6.12 16 11 C 0.05 1.05 11.43 -17.24 -0.20 0.85 16 12 N -0.32 -7.47 3.67 -62.56 -0.23 -7.70 16 13 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 14 C -0.61 -17.19 9.24 -34.44 -0.32 -17.50 16 15 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.90 -26.37 13.65 55.43 0.76 -25.62 16 18 Si 1.08 25.00 29.90 -169.99 -5.08 19.92 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.30 -7.08 12.42 31.43 0.39 -6.69 16 23 S 0.20 1.95 22.08 -107.50 -2.37 -0.43 16 24 C -0.19 -1.61 6.28 -35.86 -0.23 -1.84 16 25 C -0.08 -0.46 9.44 36.00 0.34 -0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.32 7.41 -51.93 -0.38 -0.07 16 29 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.07 0.38 7.45 -51.93 -0.39 -0.01 16 31 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.41 5.89 7.94 -40.82 -0.32 5.57 16 33 H 0.16 3.15 5.90 -52.48 -0.31 2.84 16 34 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 35 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 36 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 37 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 38 H 0.07 0.34 8.11 -51.93 -0.42 -0.09 16 39 H 0.08 0.37 7.41 -51.93 -0.38 -0.02 16 40 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -33.34 355.94 -9.46 -42.80 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.06 Total: 3.54 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.22 Total: -11.34 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.85 Total: -50.62 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.37 Total: -0.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.34 -9.46 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.679 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds