Wall clock time and date at job start Tue Mar 31 2020 12:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47102 * 2 1 4 4 C 1.37469 * 122.44952 * 265.31577 * 3 2 1 5 5 C 1.36668 * 113.29063 * 180.20145 * 4 3 2 6 6 C 1.46560 * 125.45796 * 179.80402 * 5 4 3 7 7 O 1.21715 * 120.00057 * 359.71324 * 6 5 4 8 8 N 1.34775 * 119.99755 * 179.71879 * 6 5 4 9 9 C 1.40082 * 119.99777 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97848 * 359.96965 * 9 8 6 11 11 C 1.35230 * 107.86833 * 179.75958 * 10 9 8 12 12 N 1.34966 * 107.86620 * 0.39274 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.86985 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31237 * 125.97517 * 179.97438 * 9 8 6 23 23 S 1.75829 * 109.08115 * 359.53387 * 5 4 3 24 24 C 1.33814 * 122.44487 * 85.00311 * 3 2 1 25 25 C 1.50698 * 124.52341 * 0.03891 * 24 3 2 26 26 H 1.09001 * 109.47030 * 59.99360 * 1 2 3 27 27 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47190 * 299.99569 * 1 2 3 29 29 H 1.09003 * 109.47190 * 240.00430 * 2 1 3 30 30 H 1.08996 * 109.47427 * 120.00361 * 2 1 3 31 31 H 1.07998 * 123.35855 * 0.02562 * 4 3 2 32 32 H 0.96999 * 119.99974 * 359.97438 * 8 6 5 33 33 H 1.08003 * 126.06367 * 0.02562 * 10 9 8 34 34 H 1.08000 * 126.07068 * 180.26198 * 11 10 9 35 35 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 36 36 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 38 38 H 1.08999 * 109.47463 * 179.97438 * 25 24 3 39 39 H 1.09004 * 109.47366 * 300.00666 * 25 24 3 40 40 H 1.09002 * 109.46883 * 60.00272 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3675 2.0847 -1.1562 5 6 2.8046 3.3613 -0.9390 6 6 3.2329 4.3017 -1.9783 7 8 3.2212 3.9633 -3.1475 8 7 3.6399 5.5410 -1.6395 9 6 4.0488 6.4400 -2.6329 10 6 4.0854 6.1837 -4.0130 11 6 4.5310 7.3010 -4.6309 12 7 4.7769 8.2288 -3.6821 13 6 5.2771 9.5860 -3.9146 14 6 4.3328 10.5827 -3.2932 15 1 3.4488 10.2394 -2.7765 16 6 4.5975 11.9327 -3.3845 17 7 5.6768 12.3504 -4.0092 18 14 3.4274 13.1681 -2.6137 19 1 3.9374 14.5436 -2.8443 20 1 2.0836 13.0286 -3.2304 21 1 3.3308 12.9142 -1.1538 22 7 4.4647 7.6691 -2.4365 23 16 2.7635 3.6972 0.7864 24 6 2.1789 2.1305 1.1250 25 6 1.8693 1.6146 2.5066 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.2954 1.6408 -2.1381 32 1 3.6490 5.8107 -0.7078 33 1 3.8032 5.2597 -4.4958 34 1 4.6679 7.4277 -5.6947 35 1 5.3449 9.7695 -4.9869 36 1 6.2643 9.6914 -3.4648 37 1 6.2845 11.7090 -4.4092 38 1 2.0769 2.3935 3.2403 39 1 0.8176 1.3334 2.5623 40 1 2.4898 0.7435 2.7167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117712269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:50 Heat of formation + Delta-G solvation = 43.698830 kcal Electronic energy + Delta-G solvation = -22904.582368 eV Core-core repulsion = 19425.625526 eV Total energy + Delta-G solvation = -3478.956842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.38384 -40.85346 -39.55916 -36.50744 -35.60727 -33.96722 -32.78995 -32.38041 -31.10218 -28.87322 -27.77592 -25.41443 -24.88208 -24.41691 -22.73988 -21.91757 -21.20412 -19.68772 -19.24938 -18.92418 -18.33898 -17.25455 -16.91232 -16.66836 -16.17248 -15.85016 -15.59824 -15.32044 -15.09907 -15.03167 -14.59544 -14.22049 -14.16064 -13.99203 -13.76763 -13.60500 -13.31350 -13.24390 -12.90069 -12.69878 -12.61290 -12.43109 -12.13290 -11.96142 -11.83459 -11.74778 -11.59786 -11.19308 -11.03988 -10.70764 -9.93788 -9.73355 -9.46224 -9.24716 -8.79622 -6.57382 -0.63814 0.36920 0.81535 0.86241 1.16137 1.25849 1.50337 1.56692 1.69951 1.78459 2.17877 2.23518 2.47854 2.99782 3.44730 3.79137 3.84951 4.03592 4.07425 4.14264 4.38914 4.50679 4.53107 4.57052 4.63568 4.68915 4.72205 4.76384 4.77313 4.92014 4.96666 5.01040 5.10240 5.16948 5.30642 5.44850 5.52471 5.53862 5.71917 5.88013 6.03910 6.23511 6.39115 6.77745 6.88326 7.18005 8.57037 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002485 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.694578 B =11264.563721 C =12014.968081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.031 4.031 5 C -0.303 4.303 6 C 0.600 3.400 7 O -0.538 6.538 8 N -0.624 5.624 9 C 0.266 3.734 10 C -0.290 4.290 11 C 0.060 3.940 12 N -0.341 5.341 13 C 0.259 3.741 14 C -0.622 4.622 15 H 0.044 0.956 16 C -0.019 4.019 17 N -0.922 5.922 18 Si 1.120 2.880 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.275 1.275 22 N -0.343 5.343 23 S 0.218 5.782 24 C -0.176 4.176 25 C -0.087 4.087 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.417 0.583 33 H 0.171 0.829 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.164 -26.117 12.376 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.423 4.423 6 C 0.389 3.611 7 O -0.415 6.415 8 N -0.272 5.272 9 C 0.012 3.988 10 C -0.321 4.321 11 C -0.089 4.089 12 N -0.122 5.122 13 C 0.140 3.860 14 C -0.660 4.660 15 H 0.063 0.937 16 C -0.218 4.218 17 N -0.558 5.558 18 Si 0.940 3.060 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.201 1.201 22 N -0.173 5.173 23 S 0.488 5.512 24 C -0.296 4.296 25 C -0.146 4.146 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.169 0.831 32 H 0.255 0.745 33 H 0.188 0.812 34 H 0.223 0.777 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.743 -22.440 13.537 27.627 hybrid contribution 0.168 -2.937 -1.669 3.382 sum -8.575 -25.377 11.868 29.298 Atomic orbital electron populations 1.21738 0.94334 1.02501 1.01839 1.20297 0.96258 0.89395 1.03983 1.18829 1.05408 0.99883 0.90484 1.20810 0.93928 0.91004 1.00828 1.23992 1.20257 1.00247 0.97796 1.17289 0.75966 0.79805 0.88077 1.90724 1.54340 1.76854 1.19597 1.42365 1.64492 1.11396 1.08975 1.19353 0.99841 0.89593 0.90029 1.21738 1.17161 1.01971 0.91223 1.23209 0.99537 0.88503 0.97625 1.48615 1.48722 1.12380 1.02529 1.19464 0.94455 0.74561 0.97559 1.22276 1.10334 0.93516 1.39911 0.93722 1.27280 0.99645 0.99565 0.95346 1.70947 1.12236 1.38223 1.34377 0.82885 0.73482 0.73653 0.75955 1.19891 1.19658 1.20065 1.77280 1.26462 1.07899 1.05704 1.83081 1.60029 1.11794 0.96268 1.24540 1.04958 0.98220 1.01864 1.20581 1.03925 1.02299 0.87746 0.93740 0.90892 0.92284 0.90570 0.89147 0.83065 0.74546 0.81210 0.77717 0.92574 0.96411 0.92949 0.90395 0.88679 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.06 -0.61 5.83 29.85 0.17 -0.44 16 3 C -0.13 -2.09 5.04 -21.05 -0.11 -2.20 16 4 C -0.03 -0.65 9.78 21.72 0.21 -0.44 16 5 C -0.30 -7.43 6.45 24.07 0.16 -7.27 16 6 C 0.60 19.34 7.75 86.41 0.67 20.01 16 7 O -0.54 -20.06 13.96 -4.40 -0.06 -20.12 16 8 N -0.62 -21.35 5.44 -311.20 -1.69 -23.04 16 9 C 0.27 11.27 8.11 133.35 1.08 12.35 16 10 C -0.29 -11.79 9.60 22.11 0.21 -11.57 16 11 C 0.06 2.40 11.43 83.52 0.95 3.35 16 12 N -0.34 -16.38 3.67 -351.85 -1.29 -17.67 16 13 C 0.26 13.46 5.57 85.64 0.48 13.94 16 14 C -0.62 -35.78 9.24 25.60 0.24 -35.54 16 15 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 16 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 17 N -0.92 -54.12 13.65 21.45 0.29 -53.83 16 18 Si 1.12 50.02 29.90 68.60 2.05 52.07 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 22 N -0.34 -16.59 12.42 -54.48 -0.68 -17.27 16 23 S 0.22 3.90 22.08 -56.49 -1.25 2.65 16 24 C -0.18 -2.47 6.28 24.68 0.15 -2.32 16 25 C -0.09 -0.63 9.44 71.24 0.67 0.04 16 26 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.51 7.41 -2.39 -0.02 0.49 16 29 H 0.08 0.75 8.11 -2.39 -0.02 0.73 16 30 H 0.09 0.61 7.45 -2.39 -0.02 0.60 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.42 12.27 7.94 -92.71 -0.74 11.53 16 33 H 0.17 6.63 5.90 -2.91 -0.02 6.61 16 34 H 0.21 6.41 8.06 -2.91 -0.02 6.39 16 35 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 36 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 37 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 38 H 0.08 0.48 8.11 -2.39 -0.02 0.46 16 39 H 0.09 0.48 7.41 -2.39 -0.02 0.46 16 40 H 0.10 0.45 7.92 -2.39 -0.02 0.43 16 Total: -1.00 -72.74 355.94 3.88 -68.85 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.44 Total: 19.69 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 6.07 Total: -11.33 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -3.37 Total: -111.81 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.06 Total: -20.12 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.25 Total: 2.65 kcal Total: -72.74 3.88 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.552 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds