Wall clock time and date at job start Tue Mar 31 2020 12:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.50701 * 109.46846 * 120.00336 * 2 1 3 5 5 C 1.37478 * 123.35109 * 305.35911 * 4 2 1 6 6 C 1.33814 * 115.10063 * 180.02562 * 5 4 2 7 7 S 1.70622 * 110.95953 * 0.02562 * 6 5 4 8 8 C 1.36659 * 123.35458 * 125.36533 * 4 2 1 9 9 C 1.46558 * 125.46045 * 0.02562 * 8 4 2 10 10 O 1.21716 * 119.99562 * 354.37276 * 9 8 4 11 11 N 1.34772 * 120.00136 * 174.36699 * 9 8 4 12 12 C 1.40086 * 119.99839 * 180.02562 * 11 9 8 13 13 C 1.40425 * 125.97673 * 359.72039 * 12 11 9 14 14 C 1.35232 * 107.86492 * 179.88736 * 13 12 11 15 15 N 1.34967 * 107.86723 * 0.36862 * 14 13 12 16 16 C 1.46500 * 125.97703 * 179.74343 * 15 14 13 17 17 C 1.50704 * 109.47073 * 125.00046 * 16 15 14 18 18 H 1.07998 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99983 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00044 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47038 * 89.99900 * 21 19 17 23 23 H 1.48496 * 109.47100 * 209.99466 * 21 19 17 24 24 H 1.48495 * 109.47101 * 329.99592 * 21 19 17 25 25 N 1.31235 * 125.97427 * 180.02562 * 12 11 9 26 26 H 1.08997 * 109.47197 * 300.00104 * 1 2 3 27 27 H 1.09004 * 109.47079 * 59.99905 * 1 2 3 28 28 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47197 * 239.99896 * 2 1 3 30 30 H 1.08994 * 109.47224 * 300.00093 * 3 2 1 31 31 H 1.09001 * 109.46904 * 60.00289 * 3 2 1 32 32 H 1.09003 * 109.47223 * 179.97438 * 3 2 1 33 33 H 1.07997 * 122.44785 * 0.02562 * 5 4 2 34 34 H 1.07998 * 124.52079 * 180.26306 * 6 5 4 35 35 H 0.96999 * 120.00050 * 0.02562 * 11 9 8 36 36 H 1.08000 * 126.06312 * 0.02988 * 13 12 11 37 37 H 1.07996 * 126.06645 * 180.11897 * 14 13 12 38 38 H 1.09001 * 109.47361 * 245.00050 * 16 15 14 39 39 H 1.08999 * 109.46782 * 5.00386 * 16 15 14 40 40 H 0.97009 * 120.00108 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6576 -0.3665 2.5077 6 6 2.2042 -1.1076 3.4786 7 16 3.2384 -2.2988 2.8284 8 6 2.9056 -1.7608 1.1878 9 6 3.4752 -2.3439 -0.0302 10 8 3.0996 -1.9594 -1.1222 11 7 4.4150 -3.3058 0.0590 12 6 4.9598 -3.8628 -1.1052 13 6 4.6168 -3.5191 -2.4228 14 6 5.3640 -4.2769 -3.2571 15 7 6.1454 -5.0772 -2.5017 16 6 7.1068 -6.0626 -3.0024 17 6 8.4642 -5.7868 -2.4086 18 1 8.5973 -4.9604 -1.7262 19 6 9.5359 -6.5901 -2.7358 20 7 10.7205 -6.3491 -2.2181 21 14 9.3056 -8.0199 -3.9157 22 1 9.5458 -7.5577 -5.3064 23 1 10.2686 -9.0991 -3.5795 24 1 7.9194 -8.5394 -3.7992 25 7 5.8759 -4.8012 -1.1551 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9723 0.4426 2.7124 34 1 2.0130 -0.9725 4.5329 35 1 4.7141 -3.6124 0.9293 36 1 3.8875 -2.7790 -2.7174 37 1 5.3371 -4.2497 -4.3364 38 1 6.7825 -7.0637 -2.7182 39 1 7.1648 -5.9941 -4.0887 40 1 11.4747 -6.9141 -2.4485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117716080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:20 Heat of formation + Delta-G solvation = 58.010045 kcal Electronic energy + Delta-G solvation = -23444.758010 eV Core-core repulsion = 19966.421749 eV Total energy + Delta-G solvation = -3478.336261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30859 -40.98153 -39.27004 -36.31381 -35.28088 -34.92657 -33.23762 -31.14093 -30.80424 -28.95359 -27.95189 -26.16315 -24.56719 -23.42538 -22.57561 -22.11480 -21.31758 -19.80049 -19.14157 -18.61398 -18.11007 -17.26302 -16.95220 -16.65669 -16.46286 -16.05133 -15.41715 -15.22593 -14.86360 -14.77461 -14.51296 -14.41041 -14.35794 -13.89710 -13.86555 -13.51125 -13.39916 -13.02116 -12.90898 -12.54785 -12.38211 -12.35374 -12.01662 -11.97654 -11.82591 -11.63692 -11.63070 -11.46608 -10.87609 -10.64328 -9.93367 -9.79191 -9.43489 -9.14427 -8.38116 -6.48731 -0.56133 0.45231 0.91251 0.96549 1.23925 1.35749 1.37972 1.41134 1.49915 1.78106 2.27141 2.28980 2.31985 2.94491 3.53859 3.84691 3.92431 4.01241 4.16155 4.26865 4.34422 4.42556 4.56814 4.66358 4.75066 4.80067 4.84493 4.84728 4.86975 5.00973 5.02657 5.05858 5.19704 5.23656 5.27642 5.38766 5.42137 5.65264 5.83124 5.98499 6.10593 6.38984 6.57018 6.87731 6.97508 7.14278 8.79109 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.002739 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.220278 B =10219.929431 C =10930.457097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.133 4.133 4 C 0.003 3.997 5 C -0.155 4.155 6 C -0.202 4.202 7 S 0.209 5.791 8 C -0.312 4.312 9 C 0.599 3.401 10 O -0.526 6.526 11 N -0.627 5.627 12 C 0.264 3.736 13 C -0.292 4.292 14 C 0.064 3.936 15 N -0.342 5.342 16 C 0.239 3.761 17 C -0.549 4.549 18 H 0.025 0.975 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.956 3.044 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.239 1.239 25 N -0.347 5.347 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.172 0.828 34 H 0.204 0.796 35 H 0.415 0.585 36 H 0.171 0.829 37 H 0.214 0.786 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.744 12.064 8.320 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.014 4.014 5 C -0.185 4.185 6 C -0.340 4.340 7 S 0.478 5.522 8 C -0.431 4.431 9 C 0.389 3.611 10 O -0.403 6.403 11 N -0.275 5.275 12 C 0.010 3.990 13 C -0.323 4.323 14 C -0.084 4.084 15 N -0.124 5.124 16 C 0.119 3.881 17 C -0.587 4.587 18 H 0.044 0.956 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.176 1.176 23 H -0.206 1.206 24 H -0.162 1.162 25 N -0.178 5.178 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.189 0.811 34 H 0.221 0.779 35 H 0.252 0.748 36 H 0.189 0.811 37 H 0.231 0.769 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.074 10.259 8.885 25.066 hybrid contribution -0.359 0.827 -0.687 1.133 sum -21.433 11.086 8.198 25.485 Atomic orbital electron populations 1.21749 0.92585 1.01653 1.03034 1.20432 0.97187 0.96499 0.95409 1.21738 1.00182 0.94164 1.03014 1.19774 0.92201 0.92070 0.97306 1.20063 1.04738 1.03963 0.89753 1.25739 1.01959 1.00095 1.06194 1.83206 1.42766 1.32108 0.94106 1.24023 1.13272 1.08907 0.96943 1.17267 0.77568 0.77624 0.88679 1.90610 1.60509 1.60699 1.28510 1.42440 1.39875 1.38361 1.06800 1.19401 0.95406 0.95770 0.88443 1.21767 1.10770 1.10291 0.89423 1.23281 0.92378 0.92440 1.00342 1.48537 1.31013 1.30867 1.01982 1.19918 0.85340 0.86786 0.96030 1.21233 0.93060 1.15486 1.28877 0.95639 1.25933 0.93959 1.00597 0.97951 1.70052 1.01573 1.40973 1.45529 0.85604 0.79965 0.77721 0.79012 1.17647 1.20634 1.16200 1.77321 1.19972 1.20830 0.99656 0.90839 0.91427 0.93668 0.89027 0.91318 0.90914 0.94360 0.81073 0.77874 0.74801 0.81141 0.76919 0.93583 0.89826 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.99 71.98 0.65 -1.40 16 2 C -0.07 -1.52 3.07 -11.54 -0.04 -1.56 16 3 C -0.13 -2.27 9.09 71.98 0.65 -1.61 16 4 C 0.00 0.06 4.72 -20.41 -0.10 -0.03 16 5 C -0.15 -2.19 9.18 21.08 0.19 -2.00 16 6 C -0.20 -2.49 10.92 66.81 0.73 -1.76 16 7 S 0.21 3.66 22.17 -56.49 -1.25 2.41 16 8 C -0.31 -7.63 6.45 24.07 0.16 -7.47 16 9 C 0.60 19.03 7.73 86.41 0.67 19.70 16 10 O -0.53 -18.57 11.12 -4.40 -0.05 -18.62 16 11 N -0.63 -21.47 5.44 -311.20 -1.69 -23.16 16 12 C 0.26 11.02 8.11 133.35 1.08 12.10 16 13 C -0.29 -11.32 9.60 22.11 0.21 -11.11 16 14 C 0.06 2.37 11.43 83.52 0.95 3.33 16 15 N -0.34 -15.57 3.67 -351.85 -1.29 -16.86 16 16 C 0.24 11.14 5.33 85.63 0.46 11.59 16 17 C -0.55 -31.95 9.79 25.60 0.25 -31.70 16 18 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 19 C 0.01 0.82 5.47 84.66 0.46 1.28 16 20 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 21 Si 0.96 40.79 27.47 68.60 1.88 42.68 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -9.18 6.54 99.48 0.65 -8.52 16 25 N -0.35 -16.64 12.42 -54.48 -0.68 -17.31 16 26 H 0.07 0.81 7.50 -2.39 -0.02 0.79 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 2.49 4.95 -2.39 -0.01 2.48 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.17 1.48 7.67 -2.91 -0.02 1.46 16 34 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.42 12.52 7.95 -92.71 -0.74 11.79 16 36 H 0.17 6.31 5.90 -2.91 -0.02 6.29 16 37 H 0.21 5.73 8.06 -2.91 -0.02 5.70 16 38 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 39 H 0.08 3.32 7.50 -2.39 -0.02 3.30 16 40 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -76.76 348.61 3.84 -72.91 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.29 Total: 26.74 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 6.33 Total: -10.65 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -3.36 Total: -115.47 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.68 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.25 Total: 2.41 kcal Total: -76.76 3.84 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117716080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.924 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds