Wall clock time and date at job start Tue Mar 31 2020 11:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48504 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47193 * 300.00519 * 3 2 1 6 6 H 1.48501 * 109.46843 * 60.00367 * 3 2 1 7 7 C 1.37875 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99676 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97190 * 125.01672 * 10 9 7 12 12 C 1.35244 * 107.85958 * 179.69374 * 11 10 9 13 13 C 1.40408 * 107.86468 * 0.42761 * 12 11 10 14 14 N 1.40159 * 125.97358 * 179.82567 * 13 12 11 15 15 C 1.34780 * 119.99467 * 359.72319 * 14 13 12 16 16 O 1.21295 * 120.00490 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99575 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47094 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47210 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.33391 * 125.19937 * 90.00083 * 20 19 18 22 22 C 1.38423 * 114.92045 * 179.97438 * 21 20 19 23 23 C 1.33390 * 114.91979 * 359.97438 * 22 21 20 24 24 S 1.75878 * 125.20693 * 269.69344 * 20 19 18 25 25 N 1.31219 * 108.05370 * 359.57201 * 13 12 11 26 26 H 0.96996 * 120.00004 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46622 * 59.99892 * 9 7 2 28 28 H 1.08994 * 109.47027 * 300.00463 * 9 7 2 29 29 H 1.07999 * 126.07153 * 359.97438 * 11 10 9 30 30 H 1.07999 * 126.06491 * 180.26500 * 12 11 10 31 31 H 0.96992 * 119.99845 * 179.72056 * 14 13 12 32 32 H 1.08997 * 109.47561 * 59.99923 * 17 15 14 33 33 H 1.09000 * 109.46976 * 299.99617 * 17 15 14 34 34 H 1.09000 * 109.47531 * 59.99538 * 18 17 15 35 35 H 1.09008 * 109.47250 * 300.00113 * 18 17 15 36 36 H 1.09000 * 109.46884 * 60.00289 * 19 18 17 37 37 H 1.09000 * 109.46955 * 299.99604 * 19 18 17 38 38 H 1.07995 * 122.54106 * 359.95411 * 21 20 19 39 39 H 1.08001 * 122.53959 * 180.02562 * 22 21 20 40 40 H 1.07998 * 125.20163 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.2420 -4.6225 0.8940 12 6 3.2565 -5.4464 0.5457 13 6 3.8684 -4.9152 -0.6010 14 7 4.9639 -5.4662 -1.2797 15 6 5.5277 -6.6068 -0.8351 16 8 5.0874 -7.1562 0.1527 17 6 6.7053 -7.1996 -1.5651 18 6 7.1495 -8.4825 -0.8597 19 6 8.3447 -9.0847 -1.6013 20 6 8.7826 -10.3481 -0.9061 21 6 8.3264 -11.5721 -1.1762 22 6 8.8766 -12.5826 -0.4066 23 6 9.7800 -12.1793 0.4880 24 16 9.9789 -10.4351 0.3803 25 7 3.2318 -3.8157 -0.9293 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 1.5778 -4.7524 1.7356 30 1 3.5462 -6.3507 1.0601 31 1 5.3162 -5.0267 -2.0693 32 1 7.5275 -6.4840 -1.5702 33 1 6.4181 -7.4303 -2.5910 34 1 6.3273 -9.1980 -0.8550 35 1 7.4366 -8.2523 0.1664 36 1 9.1671 -8.3694 -1.6062 37 1 8.0571 -9.3151 -2.6271 38 1 7.5838 -11.7604 -1.9374 39 1 8.5963 -13.6192 -0.5225 40 1 10.3110 -12.8254 1.1713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117718898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:52 Heat of formation + Delta-G solvation = 65.014012 kcal Electronic energy + Delta-G solvation = -22326.311868 eV Core-core repulsion = 18848.279322 eV Total energy + Delta-G solvation = -3478.032546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68305 -39.36137 -38.26624 -35.17518 -34.62724 -33.35609 -31.29511 -30.47171 -29.31465 -27.37703 -26.44074 -24.16784 -23.03732 -22.20977 -21.12127 -20.10154 -19.60298 -19.46388 -17.55267 -16.77788 -16.61863 -16.41929 -16.10436 -15.70162 -15.27671 -14.62332 -14.33599 -14.06103 -13.90515 -13.79324 -13.17287 -12.96568 -12.80023 -12.76496 -12.34530 -12.24775 -12.04616 -11.94329 -11.74610 -11.68528 -11.11521 -11.05255 -10.88670 -10.87719 -10.42171 -10.27181 -10.00005 -9.56725 -9.48395 -8.93152 -8.76095 -8.64832 -8.13131 -7.46997 -6.25415 -4.30431 0.70389 1.34406 1.71671 2.34244 2.45028 2.80649 2.93852 3.21454 3.28990 3.35612 3.72620 3.87777 4.30941 4.34283 4.57587 4.66822 4.77035 4.87623 5.03360 5.09816 5.16315 5.27988 5.29051 5.33470 5.43719 5.59003 5.73799 5.81199 5.90017 6.00455 6.05252 6.20518 6.28451 6.49347 6.61919 6.85723 7.04498 7.42191 7.57548 7.70539 7.88210 8.04044 8.27511 8.63505 8.79688 9.35302 10.83353 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.001840 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.381484 B =15211.451797 C =15523.691381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.288 4.288 13 C 0.256 3.744 14 N -0.633 5.633 15 C 0.517 3.483 16 O -0.518 6.518 17 C -0.136 4.136 18 C -0.099 4.099 19 C -0.051 4.051 20 C -0.166 4.166 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.219 4.219 24 S 0.095 5.905 25 N -0.305 5.305 26 H 0.267 0.733 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.411 0.589 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.093 -22.013 -3.097 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.319 4.319 13 C 0.003 3.997 14 N -0.280 5.280 15 C 0.303 3.697 16 O -0.392 6.392 17 C -0.176 4.176 18 C -0.138 4.138 19 C -0.090 4.090 20 C -0.284 4.284 21 C -0.173 4.173 22 C -0.163 4.163 23 C -0.355 4.355 24 S 0.359 5.641 25 N -0.137 5.137 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.185 0.815 30 H 0.177 0.823 31 H 0.246 0.754 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.371 -20.189 -2.439 27.405 hybrid contribution -0.349 -0.521 -0.501 0.803 sum 18.022 -20.710 -2.940 27.611 Atomic orbital electron populations 1.69925 1.06039 1.27527 1.49846 1.24951 0.94991 0.99572 0.94616 0.86272 0.80049 0.82453 0.77721 1.19572 1.20691 1.20756 1.21298 0.94029 0.89367 1.51926 0.91255 1.19756 0.85632 0.81324 0.99287 1.49077 1.23223 1.19709 1.18064 1.22569 1.00387 0.90194 0.96785 1.21526 1.02213 1.06255 1.01919 1.19150 0.91538 0.94275 0.94780 1.42559 1.29907 1.25148 1.30423 1.20687 0.84391 0.79630 0.85015 1.90652 1.62659 1.60148 1.25720 1.21650 0.96400 0.98748 1.00809 1.21365 0.97343 0.95372 0.99695 1.20210 0.98206 0.91947 0.98655 1.24511 1.02563 0.99032 1.02282 1.20145 1.02967 0.91422 1.02816 1.20182 0.98339 1.00774 0.97023 1.25603 1.06091 0.97738 1.06060 1.84365 1.40436 1.04143 1.35201 1.77325 1.03658 1.16404 1.16265 0.92374 0.93699 0.92525 0.81504 0.82318 0.75426 0.88417 0.88385 0.90498 0.90669 0.90529 0.89696 0.84287 0.84410 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 10 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 13 C 0.26 5.11 8.11 -154.39 -1.25 3.85 16 14 N -0.63 -9.41 5.45 -11.13 -0.06 -9.47 16 15 C 0.52 6.90 7.80 -10.98 -0.09 6.82 16 16 O -0.52 -8.75 13.11 5.54 0.07 -8.68 16 17 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 18 C -0.10 -0.84 4.49 -26.73 -0.12 -0.96 16 19 C -0.05 -0.34 5.71 -27.88 -0.16 -0.49 16 20 C -0.17 -1.35 5.76 -36.00 -0.21 -1.56 16 21 C -0.14 -1.13 10.05 -41.21 -0.41 -1.55 16 22 C -0.13 -0.99 10.18 -41.21 -0.42 -1.41 16 23 C -0.22 -1.63 11.23 29.04 0.33 -1.31 16 24 S 0.10 0.77 23.33 -107.50 -2.51 -1.74 16 25 N -0.31 -7.03 12.42 31.44 0.39 -6.64 16 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 29 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 30 H 0.16 3.08 5.92 -52.49 -0.31 2.77 16 31 H 0.41 4.83 8.82 -40.82 -0.36 4.47 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 35 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -33.32 361.21 -9.97 -43.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.28 Total: 3.76 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.52 Total: -10.04 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.84 Total: -48.35 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.32 -9.97 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.308 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds