Wall clock time and date at job start Tue Mar 31 2020 12:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28022 * 124.77846 * 2 1 4 4 C 1.34754 * 118.11441 * 179.97438 * 3 2 1 5 5 C 1.41191 * 128.79579 * 180.02562 * 4 3 2 6 6 C 1.36017 * 120.64008 * 179.97438 * 5 4 3 7 7 C 1.39363 * 120.71831 * 0.02562 * 6 5 4 8 8 N 1.40058 * 120.08131 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00209 * 146.81224 * 8 7 6 10 10 O 1.21589 * 119.99738 * 354.63952 * 9 8 7 11 11 N 1.34780 * 119.99949 * 174.63259 * 9 8 7 12 12 C 1.46495 * 120.00263 * 359.72829 * 11 9 8 13 13 C 1.46501 * 119.99822 * 180.02562 * 11 9 8 14 14 H 1.09003 * 109.47149 * 0.02562 * 13 11 9 15 15 C 1.52994 * 109.47214 * 120.00257 * 13 11 9 16 16 C 1.50704 * 109.47183 * 240.00494 * 13 11 9 17 17 H 1.08002 * 119.99738 * 359.97438 * 16 13 11 18 18 C 1.37873 * 120.00253 * 180.02562 * 16 13 11 19 19 N 1.31522 * 119.99901 * 359.97438 * 18 16 13 20 20 Si 1.86791 * 120.00166 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.47224 * 89.99849 * 20 18 16 22 22 H 1.48500 * 109.47331 * 209.99638 * 20 18 16 23 23 H 1.48495 * 109.47535 * 329.99739 * 20 18 16 24 24 C 1.38215 * 119.83428 * 0.23034 * 7 6 5 25 25 C 1.39352 * 119.97450 * 359.49580 * 24 7 6 26 26 S 1.75822 * 124.77777 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46560 * 90.02727 * 1 2 3 28 28 H 1.08998 * 109.47139 * 210.02167 * 1 2 3 29 29 H 1.09000 * 109.47514 * 330.02817 * 1 2 3 30 30 H 1.07992 * 119.68088 * 359.94817 * 5 4 3 31 31 H 1.07997 * 119.63698 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99878 * 326.81106 * 8 7 6 33 33 H 1.09004 * 109.47252 * 89.99236 * 12 11 9 34 34 H 1.08990 * 109.47361 * 209.99584 * 12 11 9 35 35 H 1.09004 * 109.47120 * 329.99931 * 12 11 9 36 36 H 1.09003 * 109.47212 * 59.99855 * 15 13 11 37 37 H 1.09000 * 109.47533 * 179.97438 * 15 13 11 38 38 H 1.09001 * 109.47041 * 300.00203 * 15 13 11 39 39 H 0.97000 * 120.00098 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.00527 * 179.75021 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2373 1.0515 0.0000 4 6 3.5757 0.8952 0.0005 5 6 4.5820 1.8855 0.0011 6 6 5.8970 1.5376 0.0021 7 6 6.2787 0.1972 0.0021 8 7 7.6366 -0.1459 0.0026 9 6 8.0504 -1.2582 0.6414 10 8 7.2623 -1.9106 1.2984 11 7 9.3377 -1.6473 0.5519 12 6 10.2858 -0.8646 -0.2447 13 6 9.7873 -2.8566 1.2459 14 1 8.9475 -3.3039 1.7775 15 6 10.3352 -3.8563 0.2255 16 6 10.8713 -2.4977 2.2295 17 1 11.1933 -1.4715 2.3275 18 6 11.4526 -3.4795 3.0035 19 7 11.0607 -4.7293 2.8837 20 14 12.7966 -3.0348 4.2220 21 1 12.1855 -2.7085 5.5357 22 1 13.7228 -4.1848 4.3790 23 1 13.5498 -1.8574 3.7205 24 6 5.3140 -0.7925 -0.0039 25 6 3.9636 -0.4485 0.0009 26 16 2.5099 -1.4441 0.0006 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.3051 2.9293 0.0004 31 1 6.6533 2.3084 0.0022 32 1 8.2793 0.4169 -0.4569 33 1 10.7493 -0.1051 0.3850 34 1 11.0558 -1.5242 -0.6446 35 1 9.7578 -0.3818 -1.0671 36 1 11.1750 -3.4092 -0.3065 37 1 10.6701 -4.7559 0.7419 38 1 9.5512 -4.1159 -0.4859 39 1 11.4694 -5.4200 3.4285 40 1 5.6068 -1.8321 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119919864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:17 Heat of formation + Delta-G solvation = 38.236417 kcal Electronic energy + Delta-G solvation = -23747.961444 eV Core-core repulsion = 20268.767734 eV Total energy + Delta-G solvation = -3479.193710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66960 -39.60432 -37.28106 -35.46274 -34.20559 -32.79287 -31.34709 -30.81406 -29.35964 -27.41389 -26.22989 -25.24796 -23.97295 -23.10975 -21.29137 -20.66598 -19.26220 -18.60498 -17.71019 -17.10474 -16.32029 -15.73419 -15.49917 -15.11722 -15.06286 -14.80156 -14.28826 -13.82633 -13.48667 -13.40237 -13.36068 -13.15547 -12.74366 -12.68112 -12.65951 -12.33374 -11.75989 -11.65715 -11.59830 -11.08728 -10.94167 -10.87877 -10.75728 -10.29946 -10.20862 -10.14512 -9.88151 -9.73133 -9.40894 -9.21245 -8.47046 -8.30937 -7.86647 -7.56391 -6.11091 -4.19162 0.40444 1.16540 1.22522 1.70268 2.27985 3.02814 3.25042 3.31890 3.33496 3.51222 3.77865 3.89115 4.29897 4.44078 4.62328 4.86910 5.05344 5.11210 5.17894 5.20187 5.26551 5.39605 5.48741 5.61366 5.75130 5.90531 5.96206 6.10350 6.17649 6.28796 6.35434 6.65383 6.74030 6.90967 6.96678 7.06637 7.38274 7.56843 7.63705 7.73383 8.00066 8.15351 8.52191 8.80912 9.08293 9.47690 10.94300 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.002858 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.735294 B = 9794.386449 C =10222.034203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.107 3.893 3 N -0.460 5.460 4 C 0.047 3.953 5 C -0.043 4.043 6 C -0.135 4.135 7 C 0.203 3.797 8 N -0.692 5.692 9 C 0.694 3.306 10 O -0.576 6.576 11 N -0.601 5.601 12 C 0.084 3.916 13 C 0.272 3.728 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.085 4.085 25 C -0.137 4.137 26 S 0.043 5.957 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.406 0.594 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.096 0.904 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 11.031 -9.851 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.179 4.179 3 N -0.173 5.173 4 C -0.072 4.072 5 C -0.064 4.064 6 C -0.158 4.158 7 C 0.102 3.898 8 N -0.341 5.341 9 C 0.396 3.604 10 O -0.453 6.453 11 N -0.335 5.335 12 C -0.060 4.060 13 C 0.172 3.828 14 H 0.083 0.917 15 C -0.206 4.206 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.111 4.111 25 C -0.256 4.256 26 S 0.297 5.703 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.244 0.756 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.745 9.713 -9.278 19.946 hybrid contribution 1.956 1.118 0.507 2.309 sum -12.789 10.831 -8.772 18.916 Atomic orbital electron populations 1.20506 0.84819 1.04406 1.04045 1.27429 1.00557 0.89211 1.00716 1.66084 1.04102 1.31385 1.15721 1.19072 0.88844 0.91769 1.07510 1.20115 0.89897 0.98223 0.98203 1.20445 0.96233 0.94571 1.04544 1.17307 0.83250 0.92315 0.96927 1.43036 1.06213 1.27824 1.56997 1.16010 0.83730 0.80574 0.80054 1.90905 1.53444 1.55816 1.45107 1.47640 1.05681 1.29021 1.51176 1.21542 0.94077 0.96445 0.93904 1.18935 0.95899 0.78619 0.89386 0.91662 1.22120 0.97907 1.02674 0.97934 1.21312 1.19921 0.94396 1.20917 0.92283 1.24886 0.97064 0.94863 0.96954 1.69876 1.42409 1.00194 1.40081 0.86477 0.81380 0.77937 0.81474 1.20594 1.21091 1.19954 1.20347 0.88170 1.01009 1.01549 1.23377 0.98187 0.95959 1.08099 1.85056 0.96989 1.11473 1.76776 0.89335 0.89769 0.89110 0.84583 0.84480 0.75641 0.93090 0.90213 0.93521 0.95056 0.88603 0.96894 0.92618 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.49 36.01 0.38 -0.17 16 2 C 0.11 1.26 7.54 -13.87 -0.10 1.15 16 3 N -0.46 -6.42 10.56 -7.77 -0.08 -6.50 16 4 C 0.05 0.69 6.95 -84.86 -0.59 0.11 16 5 C -0.04 -0.54 10.04 -39.26 -0.39 -0.93 16 6 C -0.14 -1.64 9.86 -39.96 -0.39 -2.03 16 7 C 0.20 3.09 6.28 -83.69 -0.53 2.57 16 8 N -0.69 -10.68 5.18 -14.23 -0.07 -10.75 16 9 C 0.69 14.25 8.02 -86.92 -0.70 13.56 16 10 O -0.58 -14.14 13.37 5.29 0.07 -14.07 16 11 N -0.60 -12.42 2.75 -181.01 -0.50 -12.91 16 12 C 0.08 1.32 9.40 59.84 0.56 1.88 16 13 C 0.27 6.80 2.64 -69.08 -0.18 6.62 16 14 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 15 C -0.15 -3.44 8.94 37.15 0.33 -3.11 16 16 C -0.53 -14.01 8.37 -34.44 -0.29 -14.30 16 17 H 0.06 1.55 7.66 -52.49 -0.40 1.15 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.08 -1.43 8.68 -39.18 -0.34 -1.77 16 25 C -0.14 -2.15 6.53 -38.56 -0.25 -2.40 16 26 S 0.04 0.57 23.37 -107.50 -2.51 -1.94 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.41 4.80 6.64 -40.82 -0.27 4.53 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.27 6.41 -51.93 -0.33 0.93 16 35 H 0.05 0.54 6.46 -51.93 -0.34 0.21 16 36 H 0.03 0.66 6.65 -51.93 -0.35 0.32 16 37 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.15 2.80 6.41 -52.49 -0.34 2.46 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -32.82 344.78 -9.67 -42.49 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.79 Total: 4.03 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.59 Total: 2.83 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.03 Total: -54.37 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.07 Total: -14.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.51 Total: -1.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.82 -9.67 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119919864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.727 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds