Wall clock time and date at job start Tue Mar 31 2020 12:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28022 * 124.77846 * 2 1 4 4 C 1.34754 * 118.11441 * 179.97438 * 3 2 1 5 5 C 1.41191 * 128.79579 * 180.02562 * 4 3 2 6 6 C 1.36017 * 120.64008 * 179.97438 * 5 4 3 7 7 C 1.39363 * 120.71831 * 0.02562 * 6 5 4 8 8 N 1.40058 * 120.08131 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00209 * 146.81224 * 8 7 6 10 10 O 1.21589 * 119.99738 * 354.63952 * 9 8 7 11 11 N 1.34780 * 119.99949 * 174.63259 * 9 8 7 12 12 C 1.46495 * 120.00263 * 359.72829 * 11 9 8 13 13 C 1.46501 * 119.99822 * 180.02562 * 11 9 8 14 14 H 1.09003 * 109.47149 * 0.02562 * 13 11 9 15 15 C 1.52994 * 109.47214 * 120.00257 * 13 11 9 16 16 C 1.50704 * 109.47183 * 240.00494 * 13 11 9 17 17 H 1.08002 * 119.99738 * 359.97438 * 16 13 11 18 18 C 1.37873 * 120.00253 * 180.02562 * 16 13 11 19 19 N 1.31522 * 119.99901 * 359.97438 * 18 16 13 20 20 Si 1.86791 * 120.00166 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.47224 * 89.99849 * 20 18 16 22 22 H 1.48500 * 109.47331 * 209.99638 * 20 18 16 23 23 H 1.48495 * 109.47535 * 329.99739 * 20 18 16 24 24 C 1.38215 * 119.83428 * 0.23034 * 7 6 5 25 25 C 1.39352 * 119.97450 * 359.49580 * 24 7 6 26 26 S 1.75822 * 124.77777 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46560 * 90.02727 * 1 2 3 28 28 H 1.08998 * 109.47139 * 210.02167 * 1 2 3 29 29 H 1.09000 * 109.47514 * 330.02817 * 1 2 3 30 30 H 1.07992 * 119.68088 * 359.94817 * 5 4 3 31 31 H 1.07997 * 119.63698 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99878 * 326.81106 * 8 7 6 33 33 H 1.09004 * 109.47252 * 89.99236 * 12 11 9 34 34 H 1.08990 * 109.47361 * 209.99584 * 12 11 9 35 35 H 1.09004 * 109.47120 * 329.99931 * 12 11 9 36 36 H 1.09003 * 109.47212 * 59.99855 * 15 13 11 37 37 H 1.09000 * 109.47533 * 179.97438 * 15 13 11 38 38 H 1.09001 * 109.47041 * 300.00203 * 15 13 11 39 39 H 0.97000 * 120.00098 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.00527 * 179.75021 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2373 1.0515 0.0000 4 6 3.5757 0.8952 0.0005 5 6 4.5820 1.8855 0.0011 6 6 5.8970 1.5376 0.0021 7 6 6.2787 0.1972 0.0021 8 7 7.6366 -0.1459 0.0026 9 6 8.0504 -1.2582 0.6414 10 8 7.2623 -1.9106 1.2984 11 7 9.3377 -1.6473 0.5519 12 6 10.2858 -0.8646 -0.2447 13 6 9.7873 -2.8566 1.2459 14 1 8.9475 -3.3039 1.7775 15 6 10.3352 -3.8563 0.2255 16 6 10.8713 -2.4977 2.2295 17 1 11.1933 -1.4715 2.3275 18 6 11.4526 -3.4795 3.0035 19 7 11.0607 -4.7293 2.8837 20 14 12.7966 -3.0348 4.2220 21 1 12.1855 -2.7085 5.5357 22 1 13.7228 -4.1848 4.3790 23 1 13.5498 -1.8574 3.7205 24 6 5.3140 -0.7925 -0.0039 25 6 3.9636 -0.4485 0.0009 26 16 2.5099 -1.4441 0.0006 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.3051 2.9293 0.0004 31 1 6.6533 2.3084 0.0022 32 1 8.2793 0.4169 -0.4569 33 1 10.7493 -0.1051 0.3850 34 1 11.0558 -1.5242 -0.6446 35 1 9.7578 -0.3818 -1.0671 36 1 11.1750 -3.4092 -0.3065 37 1 10.6701 -4.7559 0.7419 38 1 9.5512 -4.1159 -0.4859 39 1 11.4694 -5.4200 3.4285 40 1 5.6068 -1.8321 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119919864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:16 Heat of formation + Delta-G solvation = 17.199380 kcal Electronic energy + Delta-G solvation = -23748.873679 eV Core-core repulsion = 20268.767734 eV Total energy + Delta-G solvation = -3480.105944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94383 -40.89613 -38.51048 -37.12885 -35.62553 -34.59818 -32.32071 -31.96833 -31.00415 -28.50297 -27.64383 -27.27568 -25.03027 -24.42207 -22.79572 -21.72741 -20.81411 -19.78638 -19.01289 -18.61865 -18.10325 -17.11276 -16.89189 -16.49000 -16.22808 -16.04002 -15.93418 -15.01498 -14.96926 -14.53566 -14.39585 -14.32180 -14.12212 -13.95963 -13.67144 -13.50287 -13.15338 -13.00176 -12.98163 -12.79316 -12.72205 -12.62461 -12.18585 -12.11499 -12.01420 -11.32455 -11.20520 -11.11316 -11.02227 -10.69287 -10.53378 -9.49883 -9.31669 -8.84519 -8.15234 -6.31739 -0.64180 0.09121 0.20261 0.67091 1.18267 1.41299 1.42500 1.52039 1.64117 2.10111 2.40990 2.66901 2.88606 3.00693 3.13159 3.59340 3.99274 4.05901 4.15374 4.28203 4.34924 4.58585 4.59738 4.66785 4.69635 4.74952 4.86933 4.93866 4.99669 5.01572 5.03171 5.10500 5.19162 5.30488 5.40891 5.51208 5.64441 5.76289 5.94549 6.12524 6.20190 6.54258 6.75575 7.00834 7.34845 7.55009 8.89155 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.002858 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.735294 B = 9794.386449 C =10222.034203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.126 3.874 3 N -0.480 5.480 4 C 0.039 3.961 5 C -0.041 4.041 6 C -0.116 4.116 7 C 0.184 3.816 8 N -0.669 5.669 9 C 0.690 3.310 10 O -0.627 6.627 11 N -0.608 5.608 12 C 0.079 3.921 13 C 0.277 3.723 14 H 0.009 0.991 15 C -0.133 4.133 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.260 1.260 24 C -0.107 4.107 25 C -0.167 4.167 26 S 0.026 5.974 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.426 0.574 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 14.256 -10.687 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.160 4.160 3 N -0.193 5.193 4 C -0.080 4.080 5 C -0.062 4.062 6 C -0.139 4.139 7 C 0.084 3.916 8 N -0.320 5.320 9 C 0.392 3.608 10 O -0.508 6.508 11 N -0.342 5.342 12 C -0.063 4.063 13 C 0.175 3.825 14 H 0.027 0.973 15 C -0.192 4.192 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.211 1.211 22 H -0.206 1.206 23 H -0.184 1.184 24 C -0.134 4.134 25 C -0.286 4.286 26 S 0.280 5.720 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.187 0.813 31 H 0.197 0.803 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.873 13.000 -10.171 22.219 hybrid contribution 1.811 0.128 0.734 1.958 sum -13.062 13.128 -9.437 20.785 Atomic orbital electron populations 1.20792 0.81220 1.05916 1.05916 1.28335 1.02200 0.87721 0.97755 1.66195 1.03734 1.31767 1.17580 1.19551 0.89854 0.91770 1.06801 1.20556 0.89407 0.99345 0.96871 1.20782 0.97174 0.93633 1.02294 1.17558 0.82462 0.93482 0.98096 1.42612 1.06907 1.26326 1.56164 1.16178 0.83245 0.81377 0.80010 1.90875 1.54788 1.57724 1.47384 1.47479 1.06676 1.28535 1.51513 1.21832 0.93648 0.96157 0.94690 1.18489 0.93509 0.80625 0.89858 0.97295 1.21901 0.98620 1.01249 0.97417 1.21578 1.20040 0.94518 1.21425 0.91958 1.25733 0.99323 0.94753 0.98703 1.70025 1.43576 1.01156 1.40951 0.85451 0.78662 0.78185 0.78681 1.21053 1.20588 1.18386 1.20173 0.89614 0.99861 1.03727 1.23521 0.98195 0.97257 1.09578 1.85055 0.97003 1.12901 1.77040 0.87062 0.87928 0.87783 0.81295 0.80324 0.73293 0.92028 0.90401 0.89156 0.92996 0.91240 0.96228 0.92637 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.49 71.24 0.75 -0.14 16 2 C 0.13 2.79 7.54 88.66 0.67 3.46 16 3 N -0.48 -12.64 10.56 -178.42 -1.88 -14.52 16 4 C 0.04 1.12 6.95 39.81 0.28 1.40 16 5 C -0.04 -0.91 10.04 22.48 0.23 -0.68 16 6 C -0.12 -2.51 9.86 22.02 0.22 -2.29 16 7 C 0.18 5.52 6.28 38.09 0.24 5.76 16 8 N -0.67 -20.13 5.18 -317.20 -1.64 -21.77 16 9 C 0.69 29.06 8.02 179.05 1.44 30.50 16 10 O -0.63 -32.90 13.37 -4.00 -0.05 -32.95 16 11 N -0.61 -25.34 2.75 -844.85 -2.33 -27.66 16 12 C 0.08 2.30 9.40 127.77 1.20 3.50 16 13 C 0.28 14.39 2.64 44.24 0.12 14.51 16 14 H 0.01 0.57 6.90 -2.39 -0.02 0.55 16 15 C -0.13 -6.37 8.94 71.98 0.64 -5.73 16 16 C -0.54 -28.94 8.37 25.60 0.21 -28.72 16 17 H 0.06 3.24 7.66 -2.91 -0.02 3.22 16 18 C 0.01 0.79 5.30 84.65 0.45 1.24 16 19 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 20 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 24 C -0.11 -3.83 8.68 22.53 0.20 -3.63 16 25 C -0.17 -5.37 6.53 22.93 0.15 -5.22 16 26 S 0.03 0.70 23.37 -56.49 -1.32 -0.62 16 27 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.43 8.92 6.64 -92.71 -0.62 8.30 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 2.31 6.41 -2.39 -0.02 2.30 16 35 H 0.09 1.81 6.46 -2.38 -0.02 1.79 16 36 H 0.05 2.21 6.65 -2.39 -0.02 2.19 16 37 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.11 4.69 6.41 -2.91 -0.02 4.67 16 Total: -1.00 -76.91 344.78 2.30 -74.62 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.47 Total: 16.77 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 6.78 Total: 13.94 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -5.61 Total: -116.67 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.32 Total: -0.62 kcal Total: -76.91 2.30 -74.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119919864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.815 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds