Wall clock time and date at job start Tue Mar 31 2020 12:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.92765 * 2 1 4 4 C 1.38357 * 120.28302 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.92680 * 180.02562 * 4 3 2 6 6 C 1.37962 * 120.14455 * 0.02766 * 4 3 2 7 7 C 1.39543 * 119.85422 * 359.97438 * 6 4 3 8 8 C 1.47901 * 120.13889 * 179.97438 * 7 6 4 9 9 N 1.30168 * 125.45681 * 180.32670 * 8 7 6 10 10 N 1.40269 * 107.76416 * 180.14093 * 9 8 7 11 11 C 1.46503 * 126.57000 * 179.82433 * 10 9 8 12 12 N 1.46494 * 109.47009 * 269.69024 * 11 10 9 13 13 C 1.46501 * 120.00048 * 270.00027 * 12 11 10 14 14 C 1.36938 * 120.00049 * 90.00167 * 12 11 10 15 15 H 1.07999 * 120.00033 * 339.28215 * 14 12 11 16 16 C 1.38814 * 119.99805 * 159.55877 * 14 12 11 17 17 N 1.31616 * 120.00240 * 347.61685 * 16 14 12 18 18 Si 1.86800 * 119.99647 * 167.61776 * 16 14 12 19 19 H 1.48505 * 109.47219 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47249 * 209.99645 * 18 16 14 21 21 H 1.48500 * 109.47223 * 329.99980 * 18 16 14 22 22 C 1.34997 * 106.86020 * 359.56617 * 10 9 8 23 23 S 1.71195 * 126.27743 * 180.22599 * 22 10 9 24 24 O 1.34430 * 107.44869 * 0.25806 * 22 10 9 25 25 C 1.37970 * 119.92852 * 180.28200 * 2 1 3 26 26 H 1.08998 * 109.47001 * 90.00257 * 1 2 3 27 27 H 1.09000 * 109.46877 * 209.99809 * 1 2 3 28 28 H 1.08992 * 109.47059 * 329.99765 * 1 2 3 29 29 H 1.07998 * 119.86132 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.47597 * 269.98322 * 5 4 3 31 31 H 1.09004 * 109.46888 * 29.98775 * 5 4 3 32 32 H 1.09000 * 109.47184 * 149.97747 * 5 4 3 33 33 H 1.08004 * 120.07287 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47088 * 149.69130 * 11 10 9 35 35 H 1.08994 * 109.47251 * 29.69311 * 11 10 9 36 36 H 1.09005 * 109.47140 * 264.88289 * 13 12 11 37 37 H 1.08996 * 109.47253 * 24.88234 * 13 12 11 38 38 H 1.08996 * 109.47237 * 144.88960 * 13 12 11 39 39 H 0.96996 * 120.00063 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.07087 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1990 0.0000 4 6 3.5808 1.2076 0.0005 5 6 4.3245 2.5183 0.0011 6 6 4.2810 0.0188 0.0005 7 6 3.5908 -1.1939 0.0005 8 6 4.3351 -2.4720 -0.0002 9 7 3.7988 -3.6581 -0.0063 10 7 4.8397 -4.5984 -0.0012 11 6 4.6987 -6.0566 -0.0016 12 7 4.6526 -6.5431 1.3794 13 6 5.8924 -6.9085 2.0691 14 6 3.4507 -6.6564 2.0257 15 1 2.5952 -6.0969 1.6770 16 6 3.3333 -7.4859 3.1324 17 7 4.2906 -8.3432 3.4169 18 14 1.8165 -7.3855 4.2181 19 1 0.7837 -8.3260 3.7141 20 1 2.1799 -7.7497 5.6112 21 1 1.2800 -6.0010 4.1923 22 6 5.9963 -3.9021 -0.0017 23 16 7.5759 -4.5621 -0.0021 24 8 5.6803 -2.5955 -0.0010 25 6 2.1954 -1.1957 -0.0059 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6538 2.1323 0.0004 30 1 4.5045 2.8344 -1.0263 31 1 3.7294 3.2734 0.5147 32 1 5.2775 2.3951 0.5156 33 1 5.3610 0.0269 0.0005 34 1 5.5493 -6.5037 -0.5162 35 1 3.7777 -6.3324 -0.5150 36 1 6.0587 -7.9815 1.9735 37 1 6.7286 -6.3701 1.6229 38 1 5.8124 -6.6458 3.1239 39 1 4.2084 -8.9231 4.1900 40 1 1.6554 -2.1310 -0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120519551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:06 Heat of formation + Delta-G solvation = 96.796041 kcal Electronic energy + Delta-G solvation = -23942.162667 eV Core-core repulsion = 20465.508293 eV Total energy + Delta-G solvation = -3476.654374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.08907 -39.75357 -36.80448 -35.04137 -33.90686 -33.78166 -31.82459 -30.57549 -27.69878 -27.20512 -26.85116 -26.12911 -24.39669 -23.74840 -21.58764 -21.10749 -20.83072 -18.23282 -17.25957 -16.99875 -16.87631 -16.49429 -15.83940 -15.41409 -15.29281 -14.85536 -14.35797 -13.93416 -13.78178 -13.53868 -13.48598 -13.27773 -12.80344 -12.32975 -12.28014 -12.22154 -12.01506 -11.84096 -11.69308 -11.55710 -11.31867 -11.18126 -11.06910 -10.99904 -10.78340 -10.62592 -10.31600 -10.16028 -8.98943 -8.96329 -8.88252 -7.57227 -7.36240 -7.27458 -6.16394 -3.63110 0.46181 1.06282 1.27814 1.52334 2.05904 2.38915 3.04227 3.19796 3.23991 3.26732 3.45792 4.05076 4.15770 4.44245 4.52925 4.74067 4.90289 4.95410 5.04804 5.08495 5.11077 5.14020 5.24665 5.32328 5.37435 5.48805 5.52238 5.56511 5.75422 5.81879 5.92992 6.00082 6.14195 6.21882 6.26359 6.61056 6.63138 6.79818 7.24581 7.46026 7.52045 7.56138 7.90174 8.74095 9.31320 9.73780 10.83341 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004225 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.949118 B = 6625.437670 C = 8491.289393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.099 4.099 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.086 4.086 7 C -0.014 4.014 8 C 0.251 3.749 9 N -0.259 5.259 10 N -0.352 5.352 11 C 0.327 3.673 12 N -0.529 5.529 13 C 0.126 3.874 14 C -0.290 4.290 15 H 0.082 0.918 16 C 0.022 3.978 17 N -0.879 5.879 18 Si 0.917 3.083 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.275 1.275 22 C 0.411 3.589 23 S -0.532 6.532 24 O -0.226 6.226 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.263 0.737 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 18.514 -7.403 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.085 4.085 5 C -0.171 4.171 6 C -0.106 4.106 7 C -0.017 4.017 8 C 0.026 3.974 9 N -0.087 5.087 10 N -0.163 5.163 11 C 0.120 3.880 12 N -0.242 5.242 13 C -0.018 4.018 14 C -0.420 4.420 15 H 0.100 0.900 16 C -0.181 4.181 17 N -0.519 5.519 18 Si 0.744 3.256 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.110 3.890 23 S -0.402 6.402 24 O -0.115 6.115 25 C -0.093 4.093 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.185 17.204 -7.164 19.636 hybrid contribution -0.855 0.591 0.846 1.340 sum -7.040 17.796 -6.318 20.154 Atomic orbital electron populations 1.20809 0.90326 1.03300 1.02690 1.19807 0.96540 0.92287 0.99742 1.21134 0.93465 0.97810 0.99330 1.19791 0.93728 0.95107 0.99868 1.20804 1.00201 0.93415 1.02659 1.21142 1.00543 0.90460 0.98466 1.17241 0.91992 0.86212 1.06210 1.24370 0.79236 0.94807 0.99035 1.77653 1.16834 0.96187 1.18048 1.56695 0.98868 1.09075 1.51638 1.22044 1.03119 0.74384 0.88469 1.44967 1.05918 1.63943 1.09405 1.21509 0.84505 0.99271 0.96548 1.19448 0.88579 1.23000 1.10967 0.89986 1.25162 0.98389 0.95493 0.99046 1.70132 1.33104 1.20821 1.27847 0.86089 0.81524 0.78342 0.79613 1.20571 1.20969 1.20010 1.27927 0.96703 0.79277 0.85110 1.93232 1.02256 1.72723 1.72020 1.85298 1.23669 1.27971 1.74589 1.21087 0.91610 0.99088 0.97552 0.90826 0.90969 0.91265 0.85423 0.90855 0.91272 0.91117 0.84738 0.87216 0.88086 0.93445 0.93723 0.93351 0.92666 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.80 5.87 -104.68 -0.61 -1.42 16 3 C -0.10 -0.84 9.34 -39.50 -0.37 -1.21 16 4 C -0.08 -0.78 5.87 -104.68 -0.61 -1.40 16 5 C -0.11 -0.75 10.01 36.01 0.36 -0.38 16 6 C -0.09 -0.99 9.36 -39.20 -0.37 -1.35 16 7 C -0.01 -0.19 5.87 -104.97 -0.62 -0.80 16 8 C 0.25 4.25 7.94 -14.30 -0.11 4.13 16 9 N -0.26 -4.85 12.16 31.97 0.39 -4.47 16 10 N -0.35 -7.14 3.88 -65.27 -0.25 -7.39 16 11 C 0.33 6.72 6.77 -63.75 -0.43 6.29 16 12 N -0.53 -12.89 3.17 -184.86 -0.59 -13.48 16 13 C 0.13 3.11 8.96 59.85 0.54 3.65 16 14 C -0.29 -7.54 9.69 -15.06 -0.15 -7.68 16 15 H 0.08 2.10 7.86 -52.49 -0.41 1.69 16 16 C 0.02 0.58 5.12 -17.43 -0.09 0.49 16 17 N -0.88 -24.01 10.52 55.49 0.58 -23.42 16 18 Si 0.92 20.59 29.57 -169.99 -5.03 15.56 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.41 8.49 8.37 54.15 0.45 8.95 16 23 S -0.53 -11.77 28.61 -107.50 -3.08 -14.85 16 24 O -0.23 -4.21 10.44 3.17 0.03 -4.18 16 25 C -0.07 -0.88 9.33 -39.19 -0.37 -1.25 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.13 1.48 7.89 -52.48 -0.41 1.06 16 34 H 0.11 2.15 7.64 -51.93 -0.40 1.75 16 35 H 0.10 1.93 8.04 -51.93 -0.42 1.51 16 36 H 0.05 1.22 7.41 -51.93 -0.38 0.84 16 37 H 0.04 1.06 6.05 -51.93 -0.31 0.74 16 38 H 0.05 1.30 7.14 -51.93 -0.37 0.93 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.14 1.70 7.82 -52.49 -0.41 1.29 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -30.26 357.04 -9.78 -40.03 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.20 Total: -0.75 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.02 Total: 7.56 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.13 Total: -48.75 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.03 Total: -4.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: -11.77 SS G_CDS: -3.08 Total: -14.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.26 -9.78 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.830 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds