Wall clock time and date at job start Tue Mar 31 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.92765 * 2 1 4 4 C 1.38357 * 120.28302 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.92680 * 180.02562 * 4 3 2 6 6 C 1.37962 * 120.14455 * 0.02766 * 4 3 2 7 7 C 1.39543 * 119.85422 * 359.97438 * 6 4 3 8 8 C 1.47901 * 120.13889 * 179.97438 * 7 6 4 9 9 N 1.30168 * 125.45681 * 180.32670 * 8 7 6 10 10 N 1.40269 * 107.76416 * 180.14093 * 9 8 7 11 11 C 1.46503 * 126.57000 * 179.82433 * 10 9 8 12 12 N 1.46494 * 109.47009 * 269.69024 * 11 10 9 13 13 C 1.46501 * 120.00048 * 270.00027 * 12 11 10 14 14 C 1.36938 * 120.00049 * 90.00167 * 12 11 10 15 15 H 1.07999 * 120.00033 * 339.28215 * 14 12 11 16 16 C 1.38814 * 119.99805 * 159.55877 * 14 12 11 17 17 N 1.31616 * 120.00240 * 347.61685 * 16 14 12 18 18 Si 1.86800 * 119.99647 * 167.61776 * 16 14 12 19 19 H 1.48505 * 109.47219 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47249 * 209.99645 * 18 16 14 21 21 H 1.48500 * 109.47223 * 329.99980 * 18 16 14 22 22 C 1.34997 * 106.86020 * 359.56617 * 10 9 8 23 23 S 1.71195 * 126.27743 * 180.22599 * 22 10 9 24 24 O 1.34430 * 107.44869 * 0.25806 * 22 10 9 25 25 C 1.37970 * 119.92852 * 180.28200 * 2 1 3 26 26 H 1.08998 * 109.47001 * 90.00257 * 1 2 3 27 27 H 1.09000 * 109.46877 * 209.99809 * 1 2 3 28 28 H 1.08992 * 109.47059 * 329.99765 * 1 2 3 29 29 H 1.07998 * 119.86132 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.47597 * 269.98322 * 5 4 3 31 31 H 1.09004 * 109.46888 * 29.98775 * 5 4 3 32 32 H 1.09000 * 109.47184 * 149.97747 * 5 4 3 33 33 H 1.08004 * 120.07287 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47088 * 149.69130 * 11 10 9 35 35 H 1.08994 * 109.47251 * 29.69311 * 11 10 9 36 36 H 1.09005 * 109.47140 * 264.88289 * 13 12 11 37 37 H 1.08996 * 109.47253 * 24.88234 * 13 12 11 38 38 H 1.08996 * 109.47237 * 144.88960 * 13 12 11 39 39 H 0.96996 * 120.00063 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.07087 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1990 0.0000 4 6 3.5808 1.2076 0.0005 5 6 4.3245 2.5183 0.0011 6 6 4.2810 0.0188 0.0005 7 6 3.5908 -1.1939 0.0005 8 6 4.3351 -2.4720 -0.0002 9 7 3.7988 -3.6581 -0.0063 10 7 4.8397 -4.5984 -0.0012 11 6 4.6987 -6.0566 -0.0016 12 7 4.6526 -6.5431 1.3794 13 6 5.8924 -6.9085 2.0691 14 6 3.4507 -6.6564 2.0257 15 1 2.5952 -6.0969 1.6770 16 6 3.3333 -7.4859 3.1324 17 7 4.2906 -8.3432 3.4169 18 14 1.8165 -7.3855 4.2181 19 1 0.7837 -8.3260 3.7141 20 1 2.1799 -7.7497 5.6112 21 1 1.2800 -6.0010 4.1923 22 6 5.9963 -3.9021 -0.0017 23 16 7.5759 -4.5621 -0.0021 24 8 5.6803 -2.5955 -0.0010 25 6 2.1954 -1.1957 -0.0059 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6538 2.1323 0.0004 30 1 4.5045 2.8344 -1.0263 31 1 3.7294 3.2734 0.5147 32 1 5.2775 2.3951 0.5156 33 1 5.3610 0.0269 0.0005 34 1 5.5493 -6.5037 -0.5162 35 1 3.7777 -6.3324 -0.5150 36 1 6.0587 -7.9815 1.9735 37 1 6.7286 -6.3701 1.6229 38 1 5.8124 -6.6458 3.1239 39 1 4.2084 -8.9231 4.1900 40 1 1.6554 -2.1310 -0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120519551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:05 Heat of formation + Delta-G solvation = 79.224578 kcal Electronic energy + Delta-G solvation = -23942.924623 eV Core-core repulsion = 20465.508293 eV Total energy + Delta-G solvation = -3477.416330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.70294 -40.59115 -38.56600 -36.76629 -35.11534 -34.54550 -33.49593 -32.01531 -28.91704 -28.27383 -28.04403 -27.72681 -25.67500 -25.42814 -23.35833 -22.35526 -21.62710 -19.85854 -19.05519 -18.66159 -18.34335 -17.50461 -17.18717 -16.93062 -16.43371 -16.39052 -15.73903 -15.42156 -15.02939 -14.49508 -14.16482 -14.09926 -13.96281 -13.71743 -13.54197 -13.41557 -13.32641 -13.21537 -12.94818 -12.84223 -12.80714 -12.73849 -12.51017 -12.36892 -12.27817 -12.10773 -12.06821 -11.92188 -10.93414 -9.94495 -9.67411 -9.45103 -9.15728 -9.02956 -8.09533 -5.64091 -0.65961 -0.41077 -0.14722 0.25574 0.82979 0.90235 1.39133 1.41359 1.47324 1.50886 2.32228 2.59705 2.64007 3.12541 3.27393 3.33232 3.73114 3.75056 3.90921 4.05260 4.18339 4.23761 4.31761 4.35175 4.52091 4.65185 4.80022 4.81028 4.85671 4.88402 4.89435 4.93438 5.18155 5.19356 5.24770 5.33948 5.44998 5.45495 5.50723 5.51932 5.85444 5.93342 6.01291 6.79536 7.41775 7.82655 8.90553 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.004225 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.949118 B = 6625.437670 C = 8491.289393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.047 4.047 8 C 0.275 3.725 9 N -0.280 5.280 10 N -0.356 5.356 11 C 0.344 3.656 12 N -0.557 5.557 13 C 0.153 3.847 14 C -0.300 4.300 15 H 0.081 0.919 16 C -0.028 4.028 17 N -0.916 5.916 18 Si 0.978 3.022 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.273 1.273 22 C 0.415 3.585 23 S -0.561 6.561 24 O -0.222 6.222 25 C -0.083 4.083 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.018 0.982 39 H 0.259 0.741 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 22.206 -8.203 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.102 4.102 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.112 4.112 7 C -0.050 4.050 8 C 0.051 3.949 9 N -0.108 5.108 10 N -0.164 5.164 11 C 0.138 3.862 12 N -0.273 5.273 13 C 0.008 3.992 14 C -0.429 4.429 15 H 0.098 0.902 16 C -0.227 4.227 17 N -0.557 5.557 18 Si 0.804 3.196 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.198 1.198 22 C 0.112 3.888 23 S -0.432 6.432 24 O -0.110 6.110 25 C -0.103 4.103 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.182 0.818 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.226 20.940 -8.002 23.879 hybrid contribution -0.300 -0.128 0.896 0.954 sum -8.526 20.813 -7.106 23.587 Atomic orbital electron populations 1.20884 0.88351 1.04114 1.03742 1.20133 0.97949 0.91668 0.98581 1.21604 0.93310 0.98830 0.96420 1.20151 0.94338 0.95359 0.98384 1.20889 1.00198 0.92191 1.03767 1.21277 1.00756 0.90617 0.98565 1.17417 0.92512 0.85128 1.09925 1.25252 0.78319 0.95718 0.95635 1.77683 1.15234 0.96377 1.21476 1.55328 0.99445 1.09815 1.51776 1.22054 1.04396 0.72502 0.87270 1.44929 1.05103 1.66759 1.10530 1.21102 0.85213 0.98009 0.94872 1.19593 0.89099 1.22765 1.11461 0.90169 1.25908 1.01014 0.95380 1.00358 1.70259 1.34949 1.22090 1.28433 0.85140 0.78580 0.78279 0.77590 1.19731 1.21404 1.19761 1.27442 0.96138 0.79986 0.85282 1.93268 1.02986 1.73437 1.73484 1.85305 1.24723 1.26663 1.74342 1.21160 0.90969 1.00013 0.98167 0.89568 0.91555 0.89127 0.81777 0.89595 0.89240 0.91179 0.84793 0.86354 0.86523 0.95340 0.93089 0.96343 0.93136 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.08 -1.33 5.87 -19.90 -0.12 -1.45 16 3 C -0.08 -1.06 9.34 22.32 0.21 -0.85 16 4 C -0.08 -1.23 5.87 -19.90 -0.12 -1.35 16 5 C -0.11 -1.03 10.01 71.24 0.71 -0.31 16 6 C -0.09 -1.94 9.36 22.52 0.21 -1.72 16 7 C -0.05 -1.22 5.87 -20.09 -0.12 -1.34 16 8 C 0.27 9.18 7.94 87.50 0.69 9.87 16 9 N -0.28 -10.46 12.16 -167.01 -2.03 -12.49 16 10 N -0.36 -14.42 3.88 -472.52 -1.83 -16.25 16 11 C 0.34 14.22 6.77 170.96 1.16 15.37 16 12 N -0.56 -27.77 3.17 -738.79 -2.34 -30.11 16 13 C 0.15 7.86 8.96 127.77 1.15 9.01 16 14 C -0.30 -15.88 9.69 84.03 0.81 -15.07 16 15 H 0.08 4.16 7.86 -2.91 -0.02 4.13 16 16 C -0.03 -1.49 5.12 84.86 0.43 -1.06 16 17 N -0.92 -51.82 10.52 21.65 0.23 -51.59 16 18 Si 0.98 43.05 29.57 68.60 2.03 45.08 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.42 17.13 8.37 129.76 1.09 18.22 16 23 S -0.56 -24.94 28.61 -56.49 -1.62 -26.56 16 24 O -0.22 -8.17 10.44 -11.57 -0.12 -8.29 16 25 C -0.08 -1.87 9.33 22.52 0.21 -1.66 16 26 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.48 8.08 -2.38 -0.02 0.46 16 32 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 33 H 0.13 2.76 7.89 -2.91 -0.02 2.73 16 34 H 0.12 4.65 7.64 -2.39 -0.02 4.63 16 35 H 0.12 4.43 8.04 -2.39 -0.02 4.41 16 36 H 0.03 1.53 7.41 -2.38 -0.02 1.52 16 37 H 0.05 2.50 6.05 -2.39 -0.01 2.48 16 38 H 0.02 1.01 7.14 -2.39 -0.02 0.99 16 39 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.13 3.11 7.82 -2.91 -0.02 3.08 16 Total: -1.00 -67.19 357.04 2.41 -64.78 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.06 Total: 8.28 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 7.04 Total: 27.16 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -5.98 Total: -110.44 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.12 Total: -8.29 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -24.94 SS G_CDS: -1.62 Total: -26.56 kcal Total: -67.19 2.41 -64.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.002 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds