Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35158 * 125.72595 * 2 1 4 4 C 1.40266 * 107.74540 * 179.77461 * 3 2 1 5 5 C 1.36522 * 107.31288 * 0.35880 * 4 3 2 6 6 C 1.47217 * 126.09589 * 179.90815 * 5 4 3 7 7 N 1.30099 * 125.33119 * 359.96276 * 6 5 4 8 8 C 1.32661 * 115.73367 * 180.21934 * 7 6 5 9 9 C 1.47288 * 122.42349 * 179.76208 * 8 7 6 10 10 O 1.21632 * 120.00190 * 179.71516 * 9 8 7 11 11 N 1.34781 * 119.99669 * 359.71343 * 9 8 7 12 12 C 1.46492 * 119.99920 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47152 * 324.99856 * 12 11 9 14 14 C 1.53006 * 109.47363 * 84.99933 * 12 11 9 15 15 C 1.50699 * 109.47054 * 204.99726 * 12 11 9 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37886 * 119.99979 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99522 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99888 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.46853 * 90.00523 * 19 17 15 21 21 H 1.48495 * 109.46942 * 210.00141 * 19 17 15 22 22 H 1.48493 * 109.47213 * 330.00308 * 19 17 15 23 23 C 1.35150 * 115.15939 * 359.49134 * 8 7 6 24 24 S 1.70996 * 109.16771 * 0.27099 * 23 8 7 25 25 N 1.36190 * 125.72318 * 179.97438 * 2 1 3 26 26 C 1.46497 * 125.70748 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47215 * 270.00332 * 1 2 3 28 28 H 1.08999 * 109.46951 * 30.00771 * 1 2 3 29 29 H 1.09001 * 109.46476 * 150.00021 * 1 2 3 30 30 H 1.08000 * 126.13042 * 0.02562 * 3 2 1 31 31 H 1.08003 * 126.34610 * 180.24836 * 4 3 2 32 32 H 0.96998 * 119.99903 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46801 * 179.97438 * 14 12 11 34 34 H 1.09001 * 109.46998 * 299.99569 * 14 12 11 35 35 H 1.09000 * 109.47050 * 59.99860 * 14 12 11 36 36 H 0.96999 * 119.99498 * 179.97438 * 18 17 15 37 37 H 1.08001 * 125.41334 * 180.25019 * 23 8 7 38 38 H 1.09001 * 109.47443 * 270.02110 * 26 25 2 39 39 H 1.09004 * 109.47323 * 30.02713 * 26 25 2 40 40 H 1.09006 * 109.47003 * 150.02239 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2962 1.0972 0.0000 4 6 3.6304 0.6642 0.0053 5 6 3.6145 -0.7009 0.0002 6 6 4.7939 -1.5820 0.0011 7 7 6.0318 -1.1820 0.0062 8 6 6.9474 -2.1420 0.0015 9 6 8.3921 -1.8555 0.0011 10 8 9.1936 -2.7704 0.0019 11 7 8.8260 -0.5794 -0.0002 12 6 10.2629 -0.2944 -0.0011 13 1 10.7834 -1.0489 0.5887 14 6 10.7870 -0.3197 -1.4384 15 6 10.5054 1.0669 0.5980 16 1 9.6724 1.6607 0.9445 17 6 11.7907 1.5550 0.7030 18 7 12.0023 2.7429 1.2263 19 14 13.2315 0.5285 0.1031 20 1 13.4971 0.8354 -1.3253 21 1 14.4364 0.8473 0.9103 22 1 12.9061 -0.9132 0.2475 23 6 6.4587 -3.4021 0.0028 24 16 4.7498 -3.3414 0.0029 25 7 2.3022 -1.1057 0.0005 26 6 1.8357 -2.4944 0.0016 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3632 -0.8900 -0.5139 30 1 1.9599 2.1235 0.0004 31 1 4.5077 1.2941 0.0104 32 1 8.1868 0.1502 -0.0012 33 1 11.8561 -0.1071 -1.4390 34 1 10.6117 -1.3044 -1.8718 35 1 10.2665 0.4348 -2.0282 36 1 12.9065 3.0861 1.3005 37 1 7.0530 -4.3038 0.0034 38 1 1.7200 -2.8380 1.0296 39 1 0.8763 -2.5558 -0.5122 40 1 2.5637 -3.1226 -0.5117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121599155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = 61.456985 kcal Electronic energy + Delta-G solvation = -23516.539123 eV Core-core repulsion = 20038.352332 eV Total energy + Delta-G solvation = -3478.186791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55070 -40.09397 -38.13884 -35.01731 -33.28763 -32.63102 -32.31098 -30.46342 -29.80401 -27.09178 -26.75672 -25.28648 -24.87247 -22.79460 -20.99336 -20.17980 -19.44954 -19.02170 -18.60024 -16.97204 -16.74829 -16.02422 -15.98290 -15.29874 -14.98562 -14.89391 -14.58301 -14.12801 -13.63735 -13.54493 -13.49087 -13.14750 -13.02202 -12.94597 -12.86097 -12.48569 -12.39985 -12.16249 -11.93173 -11.89451 -11.62719 -11.24442 -10.78181 -10.15059 -9.99138 -9.94530 -9.74837 -9.34368 -9.32648 -9.17992 -8.88447 -8.71013 -8.13596 -7.78299 -6.15393 -4.17602 0.24771 1.00603 1.43495 1.66424 2.38214 2.39159 2.97452 3.27195 3.38739 3.43505 3.73183 3.82257 4.09397 4.29917 4.36208 4.54580 4.65895 4.78079 4.84650 4.98631 5.18894 5.18976 5.23248 5.35087 5.37329 5.48527 5.51507 5.85341 6.10205 6.16790 6.35569 6.41712 6.59368 6.71527 6.82090 6.87662 6.97260 7.21823 7.28503 7.47948 7.54532 8.20447 8.57813 8.80067 8.92592 9.44846 10.96860 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.003133 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.169417 B = 8935.490420 C =10155.598485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.040 3.960 3 C -0.200 4.200 4 C -0.112 4.112 5 C 0.054 3.946 6 C 0.133 3.867 7 N -0.424 5.424 8 C 0.034 3.966 9 C 0.577 3.423 10 O -0.551 6.551 11 N -0.677 5.677 12 C 0.235 3.765 13 H 0.050 0.950 14 C -0.161 4.161 15 C -0.533 4.533 16 H 0.082 0.918 17 C 0.078 3.922 18 N -0.892 5.892 19 Si 0.885 3.115 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.262 1.262 23 C -0.225 4.225 24 S 0.129 5.871 25 N -0.441 5.441 26 C 0.063 3.937 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.406 0.594 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.267 0.733 37 H 0.190 0.810 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.999 -10.224 -3.606 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.224 4.224 4 C -0.142 4.142 5 C -0.058 4.058 6 C -0.143 4.143 7 N -0.139 5.139 8 C -0.101 4.101 9 C 0.358 3.642 10 O -0.431 6.431 11 N -0.324 5.324 12 C 0.132 3.868 13 H 0.068 0.932 14 C -0.220 4.220 15 C -0.571 4.571 16 H 0.100 0.900 17 C -0.125 4.125 18 N -0.529 5.529 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.186 1.186 23 C -0.366 4.366 24 S 0.387 5.613 25 N -0.119 5.119 26 C -0.079 4.079 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.241 0.759 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.207 0.793 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.926 -11.338 -3.537 28.518 hybrid contribution 1.604 -0.065 -0.323 1.638 sum -24.322 -11.403 -3.860 27.138 Atomic orbital electron populations 1.20366 0.87699 1.03339 1.02825 1.20469 0.93452 0.85407 1.08075 1.20720 0.92316 0.97901 1.11511 1.21139 0.98000 0.91612 1.03416 1.17139 0.80288 0.91934 1.16429 1.24616 0.92915 0.92121 1.04687 1.66976 0.98330 1.33994 1.14638 1.20488 0.95768 0.87830 1.06063 1.17160 0.84686 0.84335 0.77978 1.90763 1.54593 1.45197 1.52504 1.46087 1.10382 1.06035 1.69864 1.19191 0.76535 0.98003 0.93111 0.93216 1.22457 1.00260 0.99651 0.99585 1.21045 0.94861 0.99802 1.41436 0.89982 1.24823 0.98549 0.94761 0.94368 1.69873 1.21791 1.17097 1.44129 0.86885 0.81788 0.81658 0.78221 1.20270 1.22155 1.18648 1.26554 0.99180 1.03047 1.07849 1.83538 1.02143 1.07140 1.68474 1.43812 1.04534 1.06084 1.57451 1.22192 1.01722 0.80034 1.03943 0.90748 0.89777 0.91807 0.83805 0.83055 0.75917 0.93315 0.94513 0.92643 0.92312 0.79301 0.90032 0.88787 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.09 36.01 0.36 -0.05 16 2 C 0.04 0.36 6.89 -81.75 -0.56 -0.21 16 3 C -0.20 -2.06 10.73 -39.92 -0.43 -2.49 16 4 C -0.11 -1.43 10.75 -39.44 -0.42 -1.85 16 5 C 0.05 0.69 6.85 -82.38 -0.56 0.12 16 6 C 0.13 1.85 7.40 -14.64 -0.11 1.74 16 7 N -0.42 -7.09 10.01 -8.26 -0.08 -7.18 16 8 C 0.03 0.60 6.64 -84.93 -0.56 0.03 16 9 C 0.58 12.31 7.76 -12.58 -0.10 12.21 16 10 O -0.55 -13.04 16.31 5.25 0.09 -12.96 16 11 N -0.68 -15.12 5.07 -56.05 -0.28 -15.41 16 12 C 0.23 5.92 2.15 -69.08 -0.15 5.77 16 13 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 14 C -0.16 -3.78 8.96 37.16 0.33 -3.45 16 15 C -0.53 -15.04 9.31 -34.44 -0.32 -15.36 16 16 H 0.08 2.45 7.98 -52.48 -0.42 2.03 16 17 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 18 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.88 22.24 24.37 -169.99 -4.14 18.10 16 20 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 23 C -0.23 -3.23 10.56 29.63 0.31 -2.92 16 24 S 0.13 1.39 19.71 -107.50 -2.12 -0.73 16 25 N -0.44 -4.24 3.17 -115.80 -0.37 -4.61 16 26 C 0.06 0.38 10.17 59.85 0.61 0.98 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.23 7.04 -51.93 -0.37 -0.14 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 32 H 0.41 8.58 8.01 -40.82 -0.33 8.25 16 33 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.19 2.49 7.99 -52.49 -0.42 2.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.32 7.01 -51.93 -0.36 -0.05 16 40 H 0.08 0.50 5.20 -41.39 -0.22 0.28 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -34.13 345.08 -7.40 -41.53 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.76 Total: 5.59 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.70 Total: -3.30 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.04 Total: -53.43 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.12 Total: -0.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.13 -7.40 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121599155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.989 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds