Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35162 * 125.72822 * 2 1 4 4 C 1.40261 * 107.74642 * 180.21684 * 3 2 1 5 5 C 1.36532 * 107.31134 * 359.77725 * 4 3 2 6 6 C 1.47210 * 126.09357 * 179.97438 * 5 4 3 7 7 N 1.30096 * 125.33122 * 359.74073 * 6 5 4 8 8 C 1.32673 * 115.73140 * 179.82275 * 7 6 5 9 9 C 1.47286 * 122.41826 * 180.19472 * 8 7 6 10 10 O 1.21637 * 120.00021 * 180.29325 * 9 8 7 11 11 N 1.34775 * 119.99936 * 0.29305 * 9 8 7 12 12 C 1.46503 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.09011 * 109.46759 * 35.00066 * 12 11 9 14 14 C 1.53004 * 109.47444 * 275.00673 * 12 11 9 15 15 C 1.50699 * 109.47308 * 155.00228 * 12 11 9 16 16 H 1.07996 * 120.00033 * 35.00365 * 15 12 11 17 17 C 1.37875 * 119.99785 * 215.00880 * 15 12 11 18 18 N 1.31522 * 119.99808 * 184.91349 * 17 15 12 19 19 Si 1.86803 * 120.00278 * 4.91178 * 17 15 12 20 20 H 1.48498 * 109.47071 * 84.83689 * 19 17 15 21 21 H 1.48501 * 109.46916 * 204.83422 * 19 17 15 22 22 H 1.48501 * 109.47098 * 324.83518 * 19 17 15 23 23 C 1.35137 * 115.16357 * 0.47142 * 8 7 6 24 24 S 1.71011 * 109.16449 * 359.74847 * 23 8 7 25 25 N 1.36178 * 125.71912 * 179.82467 * 2 1 3 26 26 C 1.46498 * 125.71137 * 0.03968 * 25 2 1 27 27 H 1.08998 * 109.47565 * 270.17375 * 1 2 3 28 28 H 1.09005 * 109.46999 * 30.17221 * 1 2 3 29 29 H 1.08996 * 109.47392 * 150.17246 * 1 2 3 30 30 H 1.08003 * 126.12613 * 359.97438 * 3 2 1 31 31 H 1.07998 * 126.34511 * 179.73025 * 4 3 2 32 32 H 0.96997 * 120.00431 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.46417 * 295.03180 * 14 12 11 34 34 H 1.09004 * 109.47294 * 55.03066 * 14 12 11 35 35 H 1.08997 * 109.47024 * 175.03375 * 14 12 11 36 36 H 0.97004 * 119.99598 * 179.97438 * 18 17 15 37 37 H 1.07994 * 125.42023 * 179.78612 * 23 8 7 38 38 H 1.09000 * 109.47535 * 269.68837 * 26 25 2 39 39 H 1.08999 * 109.47399 * 29.69678 * 26 25 2 40 40 H 1.09007 * 109.47110 * 149.68994 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2963 1.0972 0.0000 4 6 3.6304 0.6642 -0.0051 5 6 3.6144 -0.7010 -0.0030 6 6 4.7937 -1.5821 -0.0072 7 7 6.0316 -1.1821 -0.0185 8 6 6.9472 -2.1423 -0.0167 9 6 8.3919 -1.8557 -0.0241 10 8 9.1934 -2.7707 -0.0275 11 7 8.8258 -0.5798 -0.0271 12 6 10.2628 -0.2947 -0.0340 13 1 10.7803 -1.0503 -0.6253 14 6 10.7942 -0.3177 1.4006 15 6 10.5023 1.0656 -0.6366 16 1 9.7922 1.8623 -0.4708 17 6 11.6278 1.2931 -1.3997 18 7 11.8869 2.5032 -1.8450 19 14 12.7849 -0.1174 -1.8011 20 1 12.2879 -0.8396 -2.9996 21 1 14.1427 0.4186 -2.0739 22 1 12.8441 -1.0523 -0.6489 23 6 6.4586 -3.4022 -0.0134 24 16 4.7495 -3.3415 -0.0056 25 7 2.3020 -1.1056 0.0034 26 6 1.8355 -2.4943 0.0068 27 1 -0.3634 0.0031 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 1.9599 2.1235 -0.0004 31 1 4.5077 1.2940 -0.0105 32 1 8.1867 0.1499 -0.0248 33 1 10.3413 0.4947 1.9688 34 1 10.5429 -1.2709 1.8660 35 1 11.8770 -0.1934 1.3890 36 1 12.6790 2.6633 -2.3816 37 1 7.0527 -4.3040 -0.0149 38 1 1.7245 -2.8379 1.0353 39 1 0.8739 -2.5559 -0.5027 40 1 2.5611 -3.1227 -0.5098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121599296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = 52.805755 kcal Electronic energy + Delta-G solvation = -23529.524022 eV Core-core repulsion = 20050.962086 eV Total energy + Delta-G solvation = -3478.561936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53969 -40.05621 -38.08822 -34.89501 -33.27701 -32.61368 -32.28985 -30.43611 -29.69849 -27.06975 -26.74534 -25.33546 -24.87688 -22.73376 -20.87962 -20.05634 -19.43741 -19.01296 -18.60433 -17.08177 -16.73450 -16.05075 -15.98045 -15.21251 -15.00157 -14.77027 -14.53132 -13.99608 -13.60565 -13.53445 -13.47514 -13.13515 -13.02071 -12.94702 -12.49229 -12.45800 -12.42303 -12.33753 -11.92184 -11.71383 -11.43083 -11.07338 -10.78185 -10.56400 -9.96563 -9.92551 -9.85203 -9.40012 -9.30831 -9.15916 -8.87400 -8.66164 -8.07628 -7.76422 -6.18756 -4.22102 0.26997 1.02804 1.45776 1.68812 2.39443 2.41073 2.98975 3.29660 3.36972 3.44244 3.75865 3.86693 4.13005 4.31154 4.36438 4.55565 4.66900 4.79398 4.86105 4.99810 5.18178 5.19485 5.26448 5.36084 5.43450 5.49513 5.52342 5.89020 6.11736 6.17944 6.38011 6.56394 6.70937 6.72685 6.83302 6.94965 6.98370 7.22865 7.36302 7.51469 7.56621 8.18923 8.61639 8.82070 8.95518 9.42806 10.92992 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.003221 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.449261 B = 8690.628219 C = 9778.602740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.040 3.960 3 C -0.200 4.200 4 C -0.113 4.113 5 C 0.055 3.945 6 C 0.133 3.867 7 N -0.424 5.424 8 C 0.034 3.966 9 C 0.574 3.426 10 O -0.555 6.555 11 N -0.679 5.679 12 C 0.229 3.771 13 H 0.051 0.949 14 C -0.147 4.147 15 C -0.528 4.528 16 H 0.081 0.919 17 C 0.081 3.919 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.226 4.226 24 S 0.126 5.874 25 N -0.441 5.441 26 C 0.063 3.937 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.404 0.596 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.189 0.811 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.484 -9.682 4.305 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.225 4.225 4 C -0.142 4.142 5 C -0.057 4.057 6 C -0.144 4.144 7 N -0.139 5.139 8 C -0.101 4.101 9 C 0.355 3.645 10 O -0.435 6.435 11 N -0.326 5.326 12 C 0.127 3.873 13 H 0.069 0.931 14 C -0.206 4.206 15 C -0.567 4.567 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.524 5.524 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.184 1.184 23 C -0.367 4.367 24 S 0.385 5.615 25 N -0.119 5.119 26 C -0.079 4.079 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.239 0.761 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.207 0.793 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.407 -10.809 4.190 27.927 hybrid contribution 1.408 -0.319 -0.346 1.484 sum -24.000 -11.128 3.844 26.732 Atomic orbital electron populations 1.20363 0.87710 1.03353 1.02794 1.20465 0.93446 0.85413 1.08116 1.20717 0.92319 0.97890 1.11526 1.21136 0.97990 0.91613 1.03451 1.17144 0.80289 0.91938 1.16376 1.24616 0.92930 0.92096 1.04734 1.66982 0.98311 1.33999 1.14585 1.20549 0.95909 0.87796 1.05873 1.17247 0.84610 0.84551 0.78076 1.90755 1.54610 1.45262 1.52828 1.46565 1.10730 1.05849 1.69449 1.19224 0.76778 0.97364 0.93940 0.93132 1.22218 1.00804 0.98983 0.98619 1.21011 1.08899 0.94642 1.32099 0.90105 1.24935 0.97317 0.95633 0.94410 1.69889 1.27227 1.20255 1.35064 0.86908 0.80199 0.82901 0.80004 1.19855 1.21149 1.18436 1.26553 0.99110 1.03065 1.07950 1.83527 1.02237 1.07191 1.68576 1.43810 1.04540 1.06082 1.57437 1.22191 1.01748 0.80049 1.03905 0.90783 0.89773 0.91801 0.83816 0.83061 0.76120 0.93234 0.95214 0.92742 0.92258 0.79341 0.90052 0.88790 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.09 36.01 0.36 -0.06 16 2 C 0.04 0.36 6.89 -81.76 -0.56 -0.20 16 3 C -0.20 -2.09 10.73 -39.92 -0.43 -2.51 16 4 C -0.11 -1.45 10.75 -39.44 -0.42 -1.87 16 5 C 0.05 0.70 6.85 -82.37 -0.56 0.14 16 6 C 0.13 1.88 7.40 -14.64 -0.11 1.77 16 7 N -0.42 -7.20 10.01 -8.26 -0.08 -7.29 16 8 C 0.03 0.61 6.64 -84.93 -0.56 0.05 16 9 C 0.57 12.44 7.76 -12.58 -0.10 12.34 16 10 O -0.55 -13.32 16.31 5.24 0.09 -13.24 16 11 N -0.68 -15.32 5.07 -56.04 -0.28 -15.61 16 12 C 0.23 5.75 2.22 -69.08 -0.15 5.60 16 13 H 0.05 1.36 4.73 -51.92 -0.25 1.12 16 14 C -0.15 -3.38 9.47 37.16 0.35 -3.03 16 15 C -0.53 -14.77 9.05 -34.44 -0.31 -15.08 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 17 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 18 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 19 Si 0.87 22.05 26.99 -169.99 -4.59 17.46 16 20 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.44 6.82 56.52 0.39 -6.06 16 23 C -0.23 -3.31 10.56 29.63 0.31 -3.00 16 24 S 0.13 1.39 19.71 -107.50 -2.12 -0.73 16 25 N -0.44 -4.31 3.17 -115.81 -0.37 -4.68 16 26 C 0.06 0.39 10.17 59.85 0.61 0.99 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.24 7.03 -51.93 -0.37 -0.13 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.40 8.63 8.07 -40.82 -0.33 8.30 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.19 2.55 7.99 -52.49 -0.42 2.13 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.34 7.00 -51.93 -0.36 -0.03 16 40 H 0.08 0.52 5.20 -41.38 -0.22 0.30 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -33.96 351.64 -7.85 -41.81 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.89 Total: 5.50 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.68 Total: -2.63 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.04 Total: -53.48 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.59 Total: 17.46 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.12 Total: -0.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.96 -7.85 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121599296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.621 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds