Wall clock time and date at job start Tue Mar 31 2020 11:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99656 * 2 1 4 4 H 1.48499 * 109.46804 * 275.17192 * 3 2 1 5 5 H 1.48493 * 109.47286 * 35.17385 * 3 2 1 6 6 H 1.48501 * 109.46588 * 155.17620 * 3 2 1 7 7 C 1.38807 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00134 * 336.33578 * 7 2 1 9 9 N 1.36937 * 119.99838 * 156.33755 * 7 2 1 10 10 C 1.46503 * 119.99943 * 321.71135 * 9 7 2 11 11 C 1.50699 * 109.46874 * 270.00305 * 10 9 7 12 12 N 1.30931 * 126.40480 * 89.72140 * 11 10 9 13 13 C 1.35394 * 105.57639 * 179.85865 * 12 11 10 14 14 C 1.47727 * 126.44498 * 180.14649 * 13 12 11 15 15 C 1.34865 * 125.27228 * 179.97438 * 14 13 12 16 16 C 1.37825 * 114.72306 * 179.79285 * 15 14 13 17 17 C 1.33714 * 115.07168 * 0.49227 * 16 15 14 18 18 S 1.75864 * 109.74743 * 359.73473 * 17 16 15 19 19 N 1.31038 * 107.10410 * 0.39737 * 13 12 11 20 20 O 1.21293 * 110.04280 * 359.74854 * 19 13 12 21 21 C 1.46503 * 120.00316 * 141.71768 * 9 7 2 22 22 C 1.55229 * 110.58052 * 59.17127 * 21 9 7 23 23 C 1.54896 * 102.58816 * 203.34071 * 22 21 9 24 24 C 1.54271 * 104.30971 * 37.93602 * 23 22 21 25 25 C 1.53872 * 106.59902 * 336.32270 * 24 23 22 26 26 H 0.96999 * 120.00204 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47119 * 30.00538 * 10 9 7 28 28 H 1.08994 * 109.47162 * 150.00408 * 10 9 7 29 29 H 1.08000 * 122.63353 * 359.97411 * 15 14 13 30 30 H 1.07997 * 122.45987 * 180.22855 * 16 15 14 31 31 H 1.08000 * 125.12638 * 179.73066 * 17 16 15 32 32 H 1.08996 * 110.43486 * 181.76794 * 21 9 7 33 33 H 1.09008 * 110.89764 * 85.05677 * 22 21 9 34 34 H 1.09001 * 110.76985 * 321.57598 * 22 21 9 35 35 H 1.08994 * 110.48696 * 279.19433 * 23 22 21 36 36 H 1.09003 * 110.48494 * 156.67869 * 23 22 21 37 37 H 1.08996 * 110.02887 * 95.60622 * 24 23 22 38 38 H 1.08993 * 110.03220 * 216.98933 * 24 23 22 39 39 H 1.09007 * 110.03203 * 119.28441 * 25 24 23 40 40 H 1.08999 * 110.03477 * 240.66904 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3883 2.1095 -1.3944 5 1 1.5066 2.6186 0.8065 6 1 3.5981 1.4111 0.5878 7 6 2.0103 -1.2021 -0.0005 8 1 1.5384 -2.0983 0.3745 9 7 3.2933 -1.2517 -0.4765 10 6 3.6701 -0.4607 -1.6507 11 6 3.4436 -1.2748 -2.8985 12 7 2.3416 -1.3258 -3.6036 13 6 2.6026 -2.1754 -4.6251 14 6 1.6706 -2.5639 -5.7033 15 6 1.9562 -3.4134 -6.7111 16 6 0.9218 -3.6255 -7.5969 17 6 -0.2011 -2.9508 -7.3288 18 16 0.0187 -1.9848 -5.8758 19 7 3.8357 -2.5922 -4.4741 20 8 4.3287 -2.0841 -3.4892 21 6 4.2892 -2.0959 0.1882 22 6 3.8343 -3.5801 0.1874 23 6 4.6182 -4.1741 1.3841 24 6 4.6026 -3.0533 2.4441 25 6 4.3934 -1.7320 1.6838 26 1 -0.4850 0.8400 0.0004 27 1 3.0615 0.4427 -1.6907 28 1 4.7228 -0.1868 -1.5816 29 1 2.9188 -3.8921 -6.8142 30 1 1.0130 -4.2848 -8.4474 31 1 -1.1064 -2.9927 -7.9161 32 1 5.2595 -1.9942 -0.2976 33 1 4.1175 -4.0730 -0.7427 34 1 2.7597 -3.6552 0.3540 35 1 5.6417 -4.4080 1.0913 36 1 4.1177 -5.0650 1.7634 37 1 3.7839 -3.2142 3.1454 38 1 5.5525 -3.0313 2.9781 39 1 3.4731 -1.2516 2.0162 40 1 5.2417 -1.0679 1.8489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156717609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:50 Heat of formation + Delta-G solvation = 123.630637 kcal Electronic energy + Delta-G solvation = -24560.023098 eV Core-core repulsion = 21084.532359 eV Total energy + Delta-G solvation = -3475.490739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.85780 -38.04689 -37.80454 -35.41546 -34.76453 -32.38372 -31.39678 -29.34922 -28.04526 -27.79244 -26.32748 -24.91215 -23.29892 -22.83200 -21.56774 -20.00248 -19.19458 -18.85435 -18.16049 -17.57350 -16.72216 -16.09443 -15.66337 -15.51303 -15.42408 -14.55583 -14.14519 -13.60567 -13.34968 -13.25022 -12.87076 -12.80611 -12.68023 -12.62305 -12.34069 -11.84614 -11.58308 -11.27287 -11.19431 -10.96483 -10.71727 -10.66700 -10.61136 -10.48233 -10.39738 -10.25371 -10.04995 -9.91803 -9.79563 -9.48391 -8.64842 -8.46087 -8.41397 -7.14086 -6.15000 -3.60149 0.63456 1.55694 1.82136 2.05184 2.51827 3.18220 3.22358 3.33915 3.37845 3.50221 3.93944 4.36756 4.61935 4.70379 5.01008 5.11487 5.23291 5.26321 5.33461 5.49441 5.52624 5.65129 5.75192 5.91961 5.95764 6.06375 6.09076 6.14500 6.16975 6.23218 6.26439 6.32516 6.39786 6.43715 6.44805 6.60943 6.62498 6.87065 6.94856 7.09269 7.84114 8.24722 8.71615 8.75537 9.51315 9.83829 10.98771 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.004538 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.353756 B = 6168.812159 C = 7239.035208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.054 3.946 3 Si 0.857 3.143 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.277 4.277 8 H 0.084 0.916 9 N -0.570 5.570 10 C 0.210 3.790 11 C 0.192 3.808 12 N -0.465 5.465 13 C 0.222 3.778 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.139 4.139 17 C -0.226 4.226 18 S 0.200 5.800 19 N -0.387 5.387 20 O 0.065 5.935 21 C 0.168 3.832 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.133 4.133 26 H 0.267 0.733 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -4.405 -7.820 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.150 4.150 3 Si 0.685 3.315 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.405 4.405 8 H 0.102 0.898 9 N -0.289 5.289 10 C 0.080 3.920 11 C -0.032 4.032 12 N -0.198 5.198 13 C -0.048 4.048 14 C -0.233 4.233 15 C -0.142 4.142 16 C -0.170 4.170 17 C -0.363 4.363 18 S 0.465 5.535 19 N -0.098 5.098 20 O 0.007 5.993 21 C 0.062 3.938 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.172 4.172 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.185 0.815 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.562 -3.742 -7.544 9.578 hybrid contribution 1.161 -0.121 -0.766 1.396 sum 5.723 -3.863 -8.310 10.805 Atomic orbital electron populations 1.69886 1.06121 1.27141 1.48135 1.25430 0.94937 0.97665 0.96965 0.87210 0.81458 0.85225 0.77568 1.20788 1.22114 1.18425 1.18571 0.87089 0.94838 1.40032 0.89844 1.44332 1.09477 1.51728 1.23389 1.20556 1.00837 0.92400 0.78228 1.31372 0.82853 0.92378 0.96567 1.72206 1.24464 1.18774 1.04326 1.22799 0.90340 0.96228 0.95463 1.21380 0.97554 1.06243 0.98118 1.20276 1.01134 0.98939 0.93850 1.19953 0.92489 1.02888 1.01626 1.26046 1.03194 1.04366 1.02691 1.84772 1.05243 1.42962 1.20570 1.74853 1.11037 1.19786 1.04172 1.85233 1.40096 1.45339 1.28620 1.21501 0.90655 0.89693 0.91954 1.22932 1.01284 0.96778 0.96431 1.22267 0.99556 0.97639 0.96510 1.22039 1.00398 0.95493 0.97710 1.22485 1.02439 0.96288 0.96010 0.92309 0.88208 0.89981 0.83870 0.84006 0.81481 0.91924 0.93134 0.90401 0.92504 0.92610 0.92309 0.92989 0.89438 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.22 13.97 55.49 0.78 -24.44 16 2 C 0.05 1.43 5.27 -17.43 -0.09 1.34 16 3 Si 0.86 19.96 25.19 -169.99 -4.28 15.68 16 4 H -0.28 -6.42 6.65 56.52 0.38 -6.05 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.28 -7.05 8.21 -15.06 -0.12 -7.18 16 8 H 0.08 2.36 6.83 -52.49 -0.36 2.00 16 9 N -0.57 -12.28 2.08 -164.93 -0.34 -12.62 16 10 C 0.21 4.24 5.13 -5.19 -0.03 4.22 16 11 C 0.19 4.00 8.07 -12.97 -0.10 3.89 16 12 N -0.46 -10.48 11.58 -9.88 -0.11 -10.60 16 13 C 0.22 4.55 8.02 -156.04 -1.25 3.29 16 14 C -0.11 -1.99 6.44 -36.90 -0.24 -2.23 16 15 C -0.11 -1.56 10.05 -40.93 -0.41 -1.97 16 16 C -0.14 -1.64 10.16 -41.32 -0.42 -2.06 16 17 C -0.23 -2.64 11.23 29.15 0.33 -2.31 16 18 S 0.20 3.08 23.32 -107.50 -2.51 0.58 16 19 N -0.39 -7.69 12.16 30.99 0.38 -7.32 16 20 O 0.07 1.28 11.29 17.98 0.20 1.48 16 21 C 0.17 3.06 3.39 -66.08 -0.22 2.84 16 22 C -0.14 -2.40 6.47 -24.55 -0.16 -2.56 16 23 C -0.12 -1.78 6.82 -25.07 -0.17 -1.95 16 24 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 16 25 C -0.13 -2.29 6.41 -25.61 -0.16 -2.45 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.10 2.20 3.46 -51.93 -0.18 2.02 16 28 H 0.08 1.34 7.93 -51.93 -0.41 0.92 16 29 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.06 1.02 7.84 -51.93 -0.41 0.62 16 33 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.08 1.60 6.58 -51.93 -0.34 1.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.75 6.95 -51.93 -0.36 1.39 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -29.40 343.87 -8.97 -38.37 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.03 Total: 2.72 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.23 Total: -9.03 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.69 Total: -54.98 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.28 Total: 15.68 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.51 Total: 0.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.40 -8.97 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156717609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.003 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds