Wall clock time and date at job start Tue Mar 31 2020 12:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47077 * 2 1 4 4 C 1.39673 * 126.06705 * 124.71768 * 3 2 1 5 5 C 1.38431 * 105.35342 * 179.84603 * 4 3 2 6 6 C 1.47124 * 126.88050 * 180.17075 * 5 4 3 7 7 O 1.21643 * 120.00627 * 0.29967 * 6 5 4 8 8 N 1.34778 * 119.99472 * 180.29799 * 6 5 4 9 9 C 1.40000 * 120.00357 * 175.62183 * 8 6 5 10 10 C 1.38731 * 120.07284 * 34.61239 * 9 8 6 11 11 C 1.38189 * 120.01732 * 179.72750 * 10 9 8 12 12 C 1.38560 * 120.17658 * 0.55016 * 11 10 9 13 13 F 1.35095 * 119.92063 * 179.74666 * 12 11 10 14 14 C 1.38352 * 120.15740 * 359.72751 * 12 11 10 15 15 C 1.38741 * 119.97838 * 359.97438 * 14 12 11 16 16 O 1.35767 * 120.08718 * 179.97438 * 15 14 12 17 17 C 1.34814 * 116.99992 * 5.42776 * 16 15 14 18 18 H 1.07997 * 119.99948 * 354.95505 * 17 16 15 19 19 C 1.38633 * 119.99872 * 174.95648 * 17 16 15 20 20 N 1.31573 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99802 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47277 * 59.99836 * 21 19 17 23 23 H 1.48501 * 109.46818 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47113 * 299.99560 * 21 19 17 25 25 N 1.36601 * 106.22488 * 0.40194 * 5 4 3 26 26 H 0.97008 * 125.18728 * 179.70320 * 25 5 4 27 27 N 1.28442 * 109.62164 * 359.73460 * 25 5 4 28 28 H 1.08997 * 109.47187 * 300.00747 * 1 2 3 29 29 H 1.09004 * 109.46458 * 60.00110 * 1 2 3 30 30 H 1.08999 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47187 * 239.99253 * 2 1 3 32 32 H 1.09001 * 109.46584 * 119.99368 * 2 1 3 33 33 H 1.07994 * 127.31804 * 359.95790 * 4 3 2 34 34 H 0.97008 * 120.00120 * 355.62098 * 8 6 5 35 35 H 1.08000 * 119.99400 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.91399 * 180.25415 * 11 10 9 37 37 H 1.07993 * 120.00652 * 180.02562 * 14 12 11 38 38 H 0.97003 * 119.99443 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9127 1.9818 0.9280 5 6 3.0842 3.2945 0.5235 6 6 3.9254 4.3146 1.1688 7 8 4.5663 4.0339 2.1639 8 7 3.9860 5.5600 0.6572 9 6 4.7128 6.5552 1.3217 10 6 5.8764 6.2286 2.0028 11 6 6.5959 7.2127 2.6536 12 6 6.1525 8.5253 2.6378 13 9 6.8572 9.4824 3.2800 14 6 4.9899 8.8582 1.9656 15 6 4.2658 7.8764 1.3049 16 8 3.1244 8.2005 0.6450 17 6 2.8088 9.5093 0.5744 18 1 3.4080 10.2383 1.0997 19 6 1.7152 9.9193 -0.1724 20 7 0.9856 9.0312 -0.8128 21 14 1.2784 11.7329 -0.2708 22 1 2.4162 12.4850 -0.8581 23 1 0.0767 11.9069 -1.1257 24 1 0.9953 12.2485 1.0927 25 7 2.3117 3.4543 -0.5917 26 1 2.2251 4.2768 -1.0986 27 7 1.7169 2.3495 -0.8663 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3650 1.4944 1.7790 34 1 3.5260 5.7670 -0.1714 35 1 6.2222 5.2056 2.0212 36 1 7.5037 6.9573 3.1798 37 1 4.6468 9.8821 1.9545 38 1 0.2206 9.3182 -1.3356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159478667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:39 Heat of formation + Delta-G solvation = -13.272120 kcal Electronic energy + Delta-G solvation = -25678.320823 eV Core-core repulsion = 21630.680359 eV Total energy + Delta-G solvation = -4047.640464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.35486 -42.55979 -40.11035 -38.60105 -36.44010 -34.66429 -34.15173 -32.52216 -31.03832 -30.30035 -29.51059 -28.31141 -25.63882 -24.39495 -23.77375 -22.30149 -21.46067 -20.80998 -19.69103 -18.91535 -18.46495 -17.76914 -16.79456 -16.07140 -15.80126 -15.35534 -15.33685 -15.05229 -14.66279 -14.45131 -14.29179 -14.21115 -13.84622 -13.71920 -13.62798 -13.53722 -13.31270 -12.48632 -12.36590 -12.30157 -11.78459 -11.61984 -11.47321 -11.42098 -11.05406 -10.86759 -10.67138 -10.62330 -10.00948 -9.91203 -9.61350 -9.17100 -9.12454 -9.06010 -8.02191 -7.29057 -6.71555 -4.29691 1.18963 1.79592 2.00326 2.52726 2.80571 3.01229 3.01762 3.04625 3.13973 3.33075 3.76623 4.20650 4.45517 4.69346 4.73986 4.84259 4.86335 4.99364 5.17822 5.25454 5.40827 5.48214 5.55023 5.64172 5.74213 5.81903 5.88888 5.97854 6.02811 6.13993 6.40526 6.44320 6.61264 6.78577 6.80764 6.85845 6.94277 7.07569 7.50036 7.60628 7.72562 7.97450 8.22489 8.74646 9.33003 10.45325 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.003975 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.766867 B = 7042.989470 C = 9471.096888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C 0.022 3.978 4 C -0.153 4.153 5 C -0.029 4.029 6 C 0.586 3.414 7 O -0.516 6.516 8 N -0.643 5.643 9 C 0.051 3.949 10 C -0.045 4.045 11 C -0.230 4.230 12 C 0.135 3.865 13 F -0.149 7.149 14 C -0.258 4.258 15 C 0.161 3.839 16 O -0.168 6.168 17 C -0.395 4.395 18 H 0.095 0.905 19 C 0.045 3.955 20 N -0.859 5.859 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 N -0.373 5.373 26 H 0.449 0.551 27 N -0.265 5.265 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.410 0.590 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -11.217 -0.088 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C -0.136 4.136 4 C -0.183 4.183 5 C -0.158 4.158 6 C 0.372 3.628 7 O -0.391 6.391 8 N -0.287 5.287 9 C -0.043 4.043 10 C -0.065 4.065 11 C -0.250 4.250 12 C 0.116 3.884 13 F -0.128 7.128 14 C -0.279 4.279 15 C 0.105 3.895 16 O -0.070 6.070 17 C -0.470 4.470 18 H 0.113 0.887 19 C -0.161 4.161 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 N -0.089 5.089 26 H 0.295 0.705 27 N -0.099 5.099 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.799 -11.331 -0.564 11.487 hybrid contribution 0.043 1.774 0.142 1.781 sum 1.842 -9.557 -0.422 9.742 Atomic orbital electron populations 1.21729 0.94595 1.01571 1.02661 1.19861 0.96172 0.88372 1.03022 1.22036 1.00346 0.96843 0.94383 1.22027 1.02162 0.91870 1.02199 1.21694 1.02696 0.97341 0.94047 1.16991 0.81125 0.81116 0.83576 1.90796 1.43767 1.79653 1.24880 1.42921 1.51022 1.08480 1.26268 1.16786 0.95188 0.85513 1.06782 1.20663 0.91083 0.99644 0.95121 1.20499 1.03867 0.91070 1.09561 1.17486 0.91052 0.85413 0.94484 1.91421 1.77993 1.63658 1.79746 1.20866 0.98001 1.01605 1.07443 1.18796 0.87031 0.91186 0.92498 1.83908 1.31422 1.28465 1.63225 1.21329 1.13584 0.79937 1.32167 0.88730 1.25292 0.95109 1.00603 0.95052 1.69980 1.16593 1.34232 1.28513 0.85728 0.78565 0.79973 0.78997 1.19270 1.20110 1.19284 1.43726 1.32408 1.11434 1.21333 0.70517 1.73053 1.18786 0.92839 1.25226 0.92627 0.92039 0.92377 0.90468 0.90017 0.81854 0.75478 0.83950 0.85687 0.83803 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.87 37.16 0.37 -0.94 16 2 C -0.04 -0.32 6.51 -27.88 -0.18 -0.50 16 3 C 0.02 0.27 6.49 -82.47 -0.54 -0.26 16 4 C -0.15 -2.07 10.77 -38.97 -0.42 -2.49 16 5 C -0.03 -0.43 7.15 -82.07 -0.59 -1.02 16 6 C 0.59 9.96 7.65 -12.65 -0.10 9.86 16 7 O -0.52 -9.80 14.33 5.24 0.08 -9.73 16 8 N -0.64 -11.29 5.18 -10.78 -0.06 -11.35 16 9 C 0.05 1.01 6.33 -83.48 -0.53 0.49 16 10 C -0.04 -0.82 8.69 -39.42 -0.34 -1.17 16 11 C -0.23 -4.07 10.02 -39.48 -0.40 -4.47 16 12 C 0.14 2.60 7.29 -39.42 -0.29 2.31 16 13 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 14 C -0.26 -5.42 9.14 -39.35 -0.36 -5.78 16 15 C 0.16 3.56 6.67 -38.93 -0.26 3.31 16 16 O -0.17 -4.20 9.32 0.04 0.00 -4.20 16 17 C -0.39 -10.04 9.49 30.88 0.29 -9.75 16 18 H 0.10 2.26 5.20 -52.49 -0.27 1.99 16 19 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 20 N -0.86 -22.64 13.67 55.48 0.76 -21.88 16 21 Si 0.94 19.14 29.55 -169.99 -5.02 14.12 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 25 N -0.37 -5.07 6.85 33.47 0.23 -4.85 16 26 H 0.45 5.36 8.23 -190.45 -1.57 3.79 16 27 N -0.26 -3.68 12.11 33.64 0.41 -3.28 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.41 6.68 7.76 -40.82 -0.32 6.36 16 35 H 0.14 2.49 6.19 -52.49 -0.32 2.17 16 36 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -29.29 339.31 -6.76 -36.04 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.87 Total: 12.10 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.43 Total: -9.38 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 1.34 Total: -41.36 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.29 -6.76 -36.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159478667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.770 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds