Wall clock time and date at job start Tue Mar 31 2020 12:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35318 * 126.12434 * 2 1 4 4 C 1.39874 * 107.91727 * 180.02562 * 3 2 1 5 5 C 1.50692 * 125.89552 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46938 * 125.00340 * 5 4 3 7 7 O 1.21296 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00320 * 180.02562 * 6 5 4 9 9 C 1.40090 * 120.00145 * 185.60692 * 8 6 5 10 10 C 1.38713 * 120.07489 * 34.06964 * 9 8 6 11 11 C 1.38185 * 120.01365 * 180.25454 * 10 9 8 12 12 C 1.38553 * 120.18294 * 359.44354 * 11 10 9 13 13 F 1.35098 * 119.92542 * 180.25455 * 12 11 10 14 14 C 1.38347 * 120.14893 * 0.27845 * 12 11 10 15 15 C 1.38740 * 119.97716 * 359.97438 * 14 12 11 16 16 O 1.35770 * 120.08501 * 179.97438 * 15 14 12 17 17 C 1.34806 * 117.00010 * 354.19117 * 16 15 14 18 18 H 1.07997 * 120.00197 * 354.51176 * 17 16 15 19 19 C 1.38644 * 119.99917 * 174.51666 * 17 16 15 20 20 N 1.31569 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46793 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.47019 * 210.00007 * 21 19 17 24 24 H 1.48499 * 109.47267 * 330.00229 * 21 19 17 25 25 N 1.30836 * 108.19973 * 0.26369 * 4 3 2 26 26 N 1.34943 * 126.12363 * 180.02562 * 2 1 3 27 27 H 0.96999 * 126.03989 * 359.95997 * 26 2 1 28 28 H 1.08996 * 109.46872 * 89.99677 * 1 2 3 29 29 H 1.08995 * 109.47071 * 209.99833 * 1 2 3 30 30 H 1.08993 * 109.46902 * 330.00188 * 1 2 3 31 31 H 1.07994 * 126.04080 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47662 * 5.00388 * 5 4 3 33 33 H 1.09000 * 109.47517 * 244.99752 * 5 4 3 34 34 H 0.97006 * 119.99414 * 5.60581 * 8 6 5 35 35 H 1.07996 * 119.99395 * 359.97438 * 10 9 8 36 36 H 1.08007 * 119.90710 * 179.72535 * 11 10 9 37 37 H 1.08000 * 120.00491 * 179.97438 * 14 12 11 38 38 H 0.97003 * 119.99591 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6336 0.6560 -0.0006 5 6 4.8543 1.5395 -0.0013 6 6 5.7396 1.1740 1.1621 7 8 5.4113 0.2839 1.9179 8 7 6.8957 1.8368 1.3635 9 6 7.7746 1.4216 2.3724 10 6 7.8953 0.0740 2.6779 11 6 8.7587 -0.3337 3.6768 12 6 9.5144 0.5995 4.3681 13 9 10.3607 0.1947 5.3403 14 6 9.4039 1.9449 4.0654 15 6 8.5351 2.3618 3.0672 16 8 8.4246 3.6817 2.7687 17 6 9.0941 4.5457 3.5577 18 1 9.6117 4.1863 4.4347 19 6 9.1181 5.8958 3.2432 20 7 8.4878 6.3336 2.1744 21 14 10.0453 7.0932 4.3368 22 1 11.4477 7.2121 3.8631 23 1 9.3894 8.4243 4.2809 24 1 10.0359 6.5951 5.7357 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0900 -0.0005 27 1 2.0055 -2.0134 -0.0004 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9741 2.1211 0.0004 32 1 4.5485 2.5819 0.0883 33 1 5.4029 1.4006 -0.9329 34 1 7.1192 2.6014 0.8099 35 1 7.3111 -0.6564 2.1380 36 1 8.8481 -1.3831 3.9162 37 1 9.9937 2.6703 4.6060 38 1 8.5050 7.2781 1.9542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159525233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:40 Heat of formation + Delta-G solvation = -9.935478 kcal Electronic energy + Delta-G solvation = -25511.408441 eV Core-core repulsion = 21463.912665 eV Total energy + Delta-G solvation = -4047.495776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.23479 -41.29289 -39.94093 -38.48556 -36.31253 -33.99740 -33.36266 -32.39773 -31.67280 -29.61537 -29.14362 -27.57712 -27.03941 -25.48549 -22.71073 -21.80433 -20.81329 -20.38872 -19.36332 -18.32493 -17.77602 -17.44378 -16.71855 -16.55991 -15.42049 -15.22451 -15.11192 -14.91629 -14.62699 -14.28207 -14.07765 -13.85693 -13.64755 -13.47784 -13.38209 -13.19230 -13.08255 -12.78613 -12.48927 -12.27809 -12.07050 -11.90257 -11.61259 -11.34388 -10.96000 -10.70105 -10.53543 -10.52227 -9.80318 -9.66477 -9.42280 -9.18754 -8.94862 -8.60757 -7.86785 -7.08281 -6.59529 -4.16795 1.82165 1.86091 2.13989 2.68807 2.82661 3.05169 3.07932 3.08997 3.13411 3.63282 3.86463 4.35610 4.48281 4.60332 4.86938 4.88088 4.96442 5.12765 5.15179 5.19150 5.22730 5.44681 5.54840 5.61182 5.70507 5.72860 5.76564 6.04718 6.07709 6.26381 6.55456 6.59678 6.78515 6.93447 6.95457 7.08554 7.21154 7.25792 7.66047 7.71778 7.84197 7.96729 8.62234 8.86669 9.47962 10.57598 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003402 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.799198 B = 8227.409614 C =10058.949076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.078 3.922 3 C -0.263 4.263 4 C 0.094 3.906 5 C -0.060 4.060 6 C 0.512 3.488 7 O -0.519 6.519 8 N -0.652 5.652 9 C 0.065 3.935 10 C -0.049 4.049 11 C -0.228 4.228 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.258 4.258 15 C 0.158 3.842 16 O -0.168 6.168 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 N -0.261 5.261 26 N -0.477 5.477 27 H 0.435 0.565 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.415 0.585 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.143 0.857 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 -8.266 -6.355 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.293 4.293 4 C -0.074 4.074 5 C -0.102 4.102 6 C 0.298 3.702 7 O -0.395 6.395 8 N -0.298 5.298 9 C -0.030 4.030 10 C -0.070 4.070 11 C -0.248 4.248 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.279 4.279 15 C 0.102 3.898 16 O -0.071 6.071 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.191 1.191 25 N -0.084 5.084 26 N -0.186 5.186 27 H 0.278 0.722 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.251 0.749 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.926 -9.573 -6.126 15.765 hybrid contribution 0.145 1.216 0.599 1.363 sum -10.781 -8.357 -5.527 14.717 Atomic orbital electron populations 1.20431 0.87419 1.03901 1.03186 1.21057 0.94486 0.87841 1.01660 1.21120 0.91425 0.99253 1.17467 1.21498 0.94480 0.91509 0.99889 1.20029 0.91863 0.99668 0.98660 1.20362 0.80933 0.82587 0.86310 1.90719 1.72138 1.30661 1.45959 1.43147 1.18567 1.33590 1.34465 1.16822 0.98013 0.91400 0.96725 1.20482 0.96421 0.93280 0.96807 1.20448 1.03368 0.98709 1.02278 1.17448 0.90924 0.92666 0.88089 1.91408 1.69211 1.91360 1.61063 1.20867 1.07026 0.94519 1.05506 1.18822 0.93483 0.85463 0.92017 1.83929 1.62379 1.09768 1.50982 1.21338 1.32236 0.87026 1.06137 0.88899 1.25274 0.97107 0.96652 0.97131 1.70006 1.39139 1.15920 1.24220 0.85690 0.79096 0.79058 0.79559 1.19747 1.20151 1.19077 1.77406 0.95446 1.12460 1.23073 1.46313 1.04244 1.08069 1.59983 0.72172 0.90293 0.91239 0.89585 0.83465 0.86508 0.86996 0.74853 0.84673 0.86001 0.83974 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.43 36.01 0.38 -0.18 16 2 C 0.08 0.82 7.21 -82.26 -0.59 0.23 16 3 C -0.26 -3.21 10.64 -40.01 -0.43 -3.64 16 4 C 0.09 1.35 6.01 -82.41 -0.50 0.86 16 5 C -0.06 -0.79 6.28 -29.04 -0.18 -0.97 16 6 C 0.51 8.92 7.55 -10.98 -0.08 8.84 16 7 O -0.52 -10.78 13.33 5.54 0.07 -10.71 16 8 N -0.65 -11.95 5.20 -9.71 -0.05 -12.00 16 9 C 0.06 1.36 6.28 -83.45 -0.52 0.83 16 10 C -0.05 -0.98 8.65 -39.43 -0.34 -1.32 16 11 C -0.23 -4.36 10.02 -39.48 -0.40 -4.76 16 12 C 0.13 2.63 7.29 -39.42 -0.29 2.34 16 13 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 14 C -0.26 -5.72 9.11 -39.36 -0.36 -6.08 16 15 C 0.16 3.67 6.66 -38.94 -0.26 3.42 16 16 O -0.17 -4.37 9.30 0.05 0.00 -4.37 16 17 C -0.39 -10.33 9.44 30.88 0.29 -10.04 16 18 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 19 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 20 N -0.86 -23.23 13.67 55.48 0.76 -22.47 16 21 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 N -0.26 -4.04 12.06 33.67 0.41 -3.63 16 26 N -0.48 -5.56 7.36 33.48 0.25 -5.31 16 27 H 0.43 3.61 8.96 -182.61 -1.64 1.97 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.26 8.12 -51.93 -0.42 0.84 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.42 7.06 8.55 -40.82 -0.35 6.71 16 35 H 0.14 2.62 6.48 -52.49 -0.34 2.28 16 36 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 37 H 0.14 3.14 5.71 -52.49 -0.30 2.84 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -33.31 340.24 -6.79 -40.11 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.00 Total: 10.99 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.37 Total: -9.45 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 1.36 Total: -43.42 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.07 Total: -15.08 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.31 -6.79 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159525233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.170 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds