Wall clock time and date at job start Tue Mar 31 2020 12:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35318 * 126.12434 * 2 1 4 4 C 1.39874 * 107.91727 * 180.02562 * 3 2 1 5 5 C 1.50692 * 125.89552 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46938 * 125.00340 * 5 4 3 7 7 O 1.21296 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00320 * 180.02562 * 6 5 4 9 9 C 1.40090 * 120.00145 * 185.60692 * 8 6 5 10 10 C 1.38713 * 120.07489 * 34.06964 * 9 8 6 11 11 C 1.38185 * 120.01365 * 180.25454 * 10 9 8 12 12 C 1.38553 * 120.18294 * 359.44354 * 11 10 9 13 13 F 1.35098 * 119.92542 * 180.25455 * 12 11 10 14 14 C 1.38347 * 120.14893 * 0.27845 * 12 11 10 15 15 C 1.38740 * 119.97716 * 359.97438 * 14 12 11 16 16 O 1.35770 * 120.08501 * 179.97438 * 15 14 12 17 17 C 1.34806 * 117.00010 * 354.19117 * 16 15 14 18 18 H 1.07997 * 120.00197 * 354.51176 * 17 16 15 19 19 C 1.38644 * 119.99917 * 174.51666 * 17 16 15 20 20 N 1.31569 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46793 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.47019 * 210.00007 * 21 19 17 24 24 H 1.48499 * 109.47267 * 330.00229 * 21 19 17 25 25 N 1.30836 * 108.19973 * 0.26369 * 4 3 2 26 26 N 1.34943 * 126.12363 * 180.02562 * 2 1 3 27 27 H 0.96999 * 126.03989 * 359.95997 * 26 2 1 28 28 H 1.08996 * 109.46872 * 89.99677 * 1 2 3 29 29 H 1.08995 * 109.47071 * 209.99833 * 1 2 3 30 30 H 1.08993 * 109.46902 * 330.00188 * 1 2 3 31 31 H 1.07994 * 126.04080 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47662 * 5.00388 * 5 4 3 33 33 H 1.09000 * 109.47517 * 244.99752 * 5 4 3 34 34 H 0.97006 * 119.99414 * 5.60581 * 8 6 5 35 35 H 1.07996 * 119.99395 * 359.97438 * 10 9 8 36 36 H 1.08007 * 119.90710 * 179.72535 * 11 10 9 37 37 H 1.08000 * 120.00491 * 179.97438 * 14 12 11 38 38 H 0.97003 * 119.99591 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6336 0.6560 -0.0006 5 6 4.8543 1.5395 -0.0013 6 6 5.7396 1.1740 1.1621 7 8 5.4113 0.2839 1.9179 8 7 6.8957 1.8368 1.3635 9 6 7.7746 1.4216 2.3724 10 6 7.8953 0.0740 2.6779 11 6 8.7587 -0.3337 3.6768 12 6 9.5144 0.5995 4.3681 13 9 10.3607 0.1947 5.3403 14 6 9.4039 1.9449 4.0654 15 6 8.5351 2.3618 3.0672 16 8 8.4246 3.6817 2.7687 17 6 9.0941 4.5457 3.5577 18 1 9.6117 4.1863 4.4347 19 6 9.1181 5.8958 3.2432 20 7 8.4878 6.3336 2.1744 21 14 10.0453 7.0932 4.3368 22 1 11.4477 7.2121 3.8631 23 1 9.3894 8.4243 4.2809 24 1 10.0359 6.5951 5.7357 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0900 -0.0005 27 1 2.0055 -2.0134 -0.0004 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9741 2.1211 0.0004 32 1 4.5485 2.5819 0.0883 33 1 5.4029 1.4006 -0.9329 34 1 7.1192 2.6014 0.8099 35 1 7.3111 -0.6564 2.1380 36 1 8.8481 -1.3831 3.9162 37 1 9.9937 2.6703 4.6060 38 1 8.5050 7.2781 1.9542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159525233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:40 Heat of formation + Delta-G solvation = -32.374222 kcal Electronic energy + Delta-G solvation = -25512.381458 eV Core-core repulsion = 21463.912665 eV Total energy + Delta-G solvation = -4048.468793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.84948 -42.24595 -41.49217 -40.10982 -38.02491 -35.53459 -34.33038 -34.29755 -32.49996 -31.18763 -30.58393 -28.93187 -27.79255 -27.36805 -24.29645 -23.43902 -22.05617 -21.41454 -20.57354 -20.14319 -19.44795 -18.39411 -18.18638 -18.01540 -17.08407 -16.90943 -16.55437 -16.24839 -15.96294 -15.75011 -15.45712 -15.43759 -15.16161 -14.72045 -14.62173 -14.40507 -14.00902 -13.97776 -13.70172 -13.50348 -13.39442 -13.19884 -12.97043 -12.77617 -12.58507 -12.34132 -12.13659 -11.67352 -11.49236 -11.18651 -10.88138 -10.79471 -10.23851 -9.57654 -9.49333 -8.76272 -8.49963 -6.15571 0.16309 0.44582 0.96488 1.38730 1.45257 1.53509 1.62208 1.70852 2.00807 2.14763 2.30374 2.65866 3.06197 3.15980 3.43640 3.56111 3.74660 3.91501 4.02444 4.16430 4.20320 4.35067 4.45641 4.50655 4.64982 4.76646 4.79937 4.88737 4.90702 5.02617 5.13399 5.21053 5.27261 5.29816 5.33949 5.55976 5.68915 5.94002 6.02115 6.50027 6.52119 6.78203 6.94511 7.19410 7.62505 8.70502 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003402 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.799198 B = 8227.409614 C =10058.949076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.089 3.911 3 C -0.288 4.288 4 C 0.075 3.925 5 C -0.053 4.053 6 C 0.513 3.487 7 O -0.553 6.553 8 N -0.653 5.653 9 C 0.066 3.934 10 C -0.052 4.052 11 C -0.205 4.205 12 C 0.123 3.877 13 F -0.144 7.144 14 C -0.264 4.264 15 C 0.133 3.867 16 O -0.199 6.199 17 C -0.417 4.417 18 H 0.097 0.903 19 C -0.006 4.006 20 N -0.901 5.901 21 Si 1.010 2.990 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.260 1.260 25 N -0.310 5.310 26 N -0.474 5.474 27 H 0.446 0.554 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.420 0.580 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 -8.955 -6.328 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.317 4.317 4 C -0.091 4.091 5 C -0.094 4.094 6 C 0.301 3.699 7 O -0.431 6.431 8 N -0.298 5.298 9 C -0.029 4.029 10 C -0.072 4.072 11 C -0.225 4.225 12 C 0.103 3.897 13 F -0.123 7.123 14 C -0.285 4.285 15 C 0.079 3.921 16 O -0.104 6.104 17 C -0.493 4.493 18 H 0.114 0.886 19 C -0.206 4.206 20 N -0.537 5.537 21 Si 0.830 3.170 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.184 1.184 25 N -0.133 5.133 26 N -0.185 5.185 27 H 0.292 0.708 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.182 0.818 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.257 0.743 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.981 -10.306 -6.110 16.944 hybrid contribution 0.375 1.157 0.578 1.347 sum -11.606 -9.149 -5.532 15.780 Atomic orbital electron populations 1.20594 0.84058 1.05170 1.04798 1.21738 0.96382 0.86874 0.99005 1.21466 0.90876 1.00759 1.18633 1.21773 0.95605 0.91564 1.00206 1.20106 0.91089 1.00717 0.97497 1.21120 0.80510 0.81475 0.86781 1.90690 1.72784 1.32124 1.47479 1.43271 1.18725 1.33936 1.33902 1.17092 0.97597 0.91583 0.96659 1.20648 0.96598 0.92841 0.97143 1.20823 1.01165 1.00109 1.00430 1.17431 0.91504 0.92172 0.88623 1.91425 1.68990 1.91149 1.60749 1.20954 1.06860 0.95452 1.05249 1.19154 0.94698 0.85197 0.93038 1.83902 1.63844 1.10735 1.51912 1.21712 1.32867 0.87828 1.06881 0.88586 1.26348 0.97788 0.97975 0.98538 1.70106 1.41030 1.16502 1.26101 0.84695 0.77912 0.76630 0.77747 1.18855 1.19354 1.18438 1.77298 0.97703 1.13271 1.25062 1.46360 1.03467 1.09163 1.59489 0.70793 0.88351 0.89664 0.88603 0.81779 0.84200 0.84527 0.74267 0.83895 0.82721 0.84551 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.43 71.24 0.74 -0.06 16 2 C 0.09 1.71 7.21 41.41 0.30 2.01 16 3 C -0.29 -6.65 10.64 21.99 0.23 -6.41 16 4 C 0.08 2.12 6.01 43.10 0.26 2.38 16 5 C -0.05 -1.34 6.28 29.10 0.18 -1.16 16 6 C 0.51 17.77 7.55 87.66 0.66 18.43 16 7 O -0.55 -22.95 13.33 -3.08 -0.04 -22.99 16 8 N -0.65 -24.10 5.20 -303.03 -1.58 -25.68 16 9 C 0.07 2.77 6.28 38.23 0.24 3.01 16 10 C -0.05 -2.00 8.65 22.37 0.19 -1.81 16 11 C -0.21 -7.46 10.02 22.33 0.22 -7.24 16 12 C 0.12 4.87 7.29 22.37 0.16 5.04 16 13 F -0.14 -5.41 17.26 44.97 0.78 -4.63 16 14 C -0.26 -11.82 9.11 22.42 0.20 -11.62 16 15 C 0.13 6.31 6.66 22.69 0.15 6.46 16 16 O -0.20 -10.74 9.30 -22.72 -0.21 -10.95 16 17 C -0.42 -22.66 9.44 67.92 0.64 -22.02 16 18 H 0.10 4.94 5.30 -2.91 -0.02 4.93 16 19 C -0.01 -0.33 5.49 84.83 0.47 0.13 16 20 N -0.90 -49.96 13.67 21.61 0.30 -49.67 16 21 Si 1.01 40.55 29.55 68.60 2.03 42.58 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 25 N -0.31 -9.46 12.06 -47.39 -0.57 -10.03 16 26 N -0.47 -10.53 7.36 -48.00 -0.35 -10.88 16 27 H 0.45 6.90 8.96 -213.33 -1.91 4.99 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.14 2.84 8.12 -2.39 -0.02 2.82 16 33 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.42 14.57 8.55 -92.70 -0.79 13.78 16 35 H 0.14 5.38 6.48 -2.91 -0.02 5.36 16 36 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.14 6.16 5.71 -2.91 -0.02 6.15 16 38 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -73.57 340.24 3.46 -70.11 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -1.55 Total: 35.00 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.66 Total: -12.87 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -2.20 Total: -96.25 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.25 Total: -33.94 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.78 Total: -4.63 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -73.57 3.46 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159525233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.737 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds