Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35167 * 125.72423 * 2 1 4 4 C 1.40270 * 107.74468 * 180.22416 * 3 2 1 5 5 C 1.36525 * 107.31032 * 359.77227 * 4 3 2 6 6 C 1.47214 * 126.09423 * 179.97438 * 5 4 3 7 7 N 1.30109 * 125.32929 * 0.02562 * 6 5 4 8 8 C 1.32667 * 115.73202 * 180.02562 * 7 6 5 9 9 C 1.47285 * 122.42077 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00292 * 173.15089 * 9 8 7 11 11 N 1.34774 * 119.99752 * 353.15364 * 9 8 7 12 12 C 1.46503 * 120.00062 * 2.68067 * 11 9 8 13 13 C 1.46501 * 120.00326 * 182.68365 * 11 9 8 14 14 C 1.50697 * 109.46974 * 89.99875 * 13 11 9 15 15 H 1.08004 * 120.00459 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00153 * 180.02562 * 14 13 11 17 17 N 1.31522 * 119.99689 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00447 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47014 * 89.99611 * 18 16 14 20 20 H 1.48499 * 109.47151 * 209.99651 * 18 16 14 21 21 H 1.48498 * 109.46696 * 329.99499 * 18 16 14 22 22 C 1.35149 * 115.16158 * 359.97438 * 8 7 6 23 23 S 1.71001 * 109.16660 * 359.72687 * 22 8 7 24 24 N 1.36185 * 125.72605 * 179.82693 * 2 1 3 25 25 C 1.46502 * 125.70527 * 0.04088 * 24 2 1 26 26 H 1.09001 * 109.47449 * 270.17029 * 1 2 3 27 27 H 1.08999 * 109.47231 * 30.17216 * 1 2 3 28 28 H 1.09006 * 109.47244 * 150.17113 * 1 2 3 29 29 H 1.07994 * 126.13023 * 359.97438 * 3 2 1 30 30 H 1.08000 * 126.34002 * 179.77026 * 4 3 2 31 31 H 1.09010 * 109.47204 * 83.97479 * 12 11 9 32 32 H 1.08998 * 109.47557 * 203.97427 * 12 11 9 33 33 H 1.09000 * 109.47699 * 323.97608 * 12 11 9 34 34 H 1.08999 * 109.47273 * 209.99856 * 13 11 9 35 35 H 1.09003 * 109.46632 * 330.00013 * 13 11 9 36 36 H 0.97001 * 119.99943 * 180.02562 * 17 16 14 37 37 H 1.07997 * 125.41371 * 179.97438 * 22 8 7 38 38 H 1.08998 * 109.46495 * 269.68304 * 25 24 2 39 39 H 1.08991 * 109.47248 * 29.68600 * 25 24 2 40 40 H 1.09005 * 109.46815 * 149.69338 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2962 1.0973 0.0000 4 6 3.6304 0.6644 -0.0052 5 6 3.6144 -0.7008 -0.0031 6 6 4.7938 -1.5819 -0.0075 7 7 6.0318 -1.1818 -0.0136 8 6 6.9474 -2.1419 -0.0173 9 6 8.3921 -1.8554 -0.0249 10 8 9.1927 -2.7627 0.0976 11 7 8.8268 -0.5877 -0.1675 12 6 7.8627 0.5118 -0.2560 13 6 10.2636 -0.3091 -0.2341 14 6 10.7190 -0.3598 -1.6697 15 1 10.0092 -0.5773 -2.4541 16 6 12.0419 -0.1285 -1.9819 17 7 12.9062 0.1370 -1.0267 18 14 12.6067 -0.1920 -3.7613 19 1 12.4854 1.1581 -4.3676 20 1 14.0235 -0.6335 -3.8155 21 1 11.7601 -1.1512 -4.5153 22 6 6.4587 -3.4020 -0.0135 23 16 4.7498 -3.3413 0.0027 24 7 2.3022 -1.1056 0.0033 25 6 1.8356 -2.4943 0.0067 26 1 -0.3634 0.0031 1.0276 27 1 -0.3633 0.8884 -0.5165 28 1 -0.3634 -0.8916 -0.5112 29 1 1.9598 2.1236 -0.0004 30 1 4.5076 1.2943 -0.0101 31 1 7.5690 0.8193 0.7478 32 1 8.3192 1.3545 -0.7751 33 1 6.9823 0.1798 -0.8063 34 1 10.4609 0.6818 0.1749 35 1 10.8057 -1.0561 0.3457 36 1 13.8368 0.3001 -1.2463 37 1 7.0530 -4.3037 -0.0160 38 1 1.7248 -2.8378 1.0352 39 1 0.8740 -2.5558 -0.5026 40 1 2.5613 -3.1226 -0.5099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159543274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = 52.428235 kcal Electronic energy + Delta-G solvation = -23800.388413 eV Core-core repulsion = 20321.810106 eV Total energy + Delta-G solvation = -3478.578307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30797 -41.53492 -39.48120 -36.75381 -34.74255 -33.92717 -33.38054 -31.27994 -30.10017 -27.90975 -27.50116 -27.35685 -26.35844 -24.51370 -23.01966 -21.29919 -20.12608 -19.94209 -19.21829 -18.73459 -17.92719 -17.34702 -16.89948 -16.84043 -16.38617 -16.23061 -15.55112 -15.32155 -15.09950 -14.59566 -14.24212 -14.23314 -13.97617 -13.84285 -13.77720 -13.52362 -13.48651 -13.33410 -13.12865 -13.00934 -12.91921 -12.58488 -12.50512 -12.48223 -12.25766 -11.76976 -11.14720 -10.95513 -10.68003 -10.53879 -10.27207 -9.62065 -9.50628 -8.61887 -8.25771 -6.41822 -0.79002 0.04355 0.37349 0.56030 1.34541 1.37942 1.48239 1.50474 1.68989 2.05207 2.22967 2.40564 2.40900 2.89516 3.03113 3.59310 3.84165 4.00699 4.01802 4.16675 4.29168 4.39734 4.48688 4.55104 4.58434 4.65826 4.75410 4.83723 4.91101 4.93787 5.14176 5.18337 5.19333 5.28772 5.40327 5.52086 5.76828 5.94100 5.99395 6.01341 6.32011 6.39293 6.61518 6.66298 7.15414 7.32264 8.81731 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.003141 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.773594 B = 8912.676767 C = 9610.932744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.058 3.942 3 C -0.220 4.220 4 C -0.131 4.131 5 C 0.027 3.973 6 C 0.114 3.886 7 N -0.446 5.446 8 C 0.009 3.991 9 C 0.565 3.435 10 O -0.587 6.587 11 N -0.589 5.589 12 C 0.087 3.913 13 C 0.258 3.742 14 C -0.547 4.547 15 H 0.050 0.950 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.240 4.240 23 S 0.245 5.755 24 N -0.439 5.439 25 C 0.052 3.948 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.004 0.996 36 H 0.269 0.731 37 H 0.190 0.810 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.905 -3.205 2.098 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.244 4.244 4 C -0.162 4.162 5 C -0.086 4.086 6 C -0.161 4.161 7 N -0.162 5.162 8 C -0.126 4.126 9 C 0.351 3.649 10 O -0.469 6.469 11 N -0.317 5.317 12 C -0.055 4.055 13 C 0.137 3.863 14 C -0.586 4.586 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.796 3.204 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.199 1.199 22 C -0.382 4.382 23 S 0.506 5.494 24 N -0.116 5.116 25 C -0.089 4.089 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.022 0.978 36 H 0.078 0.922 37 H 0.207 0.793 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -32.980 -4.259 2.226 33.329 hybrid contribution 2.468 0.179 -0.607 2.548 sum -30.512 -4.080 1.619 30.827 Atomic orbital electron populations 1.20535 0.84560 1.04930 1.04131 1.21124 0.95173 0.84655 1.04900 1.20976 0.91554 0.99331 1.12568 1.21236 0.98752 0.91982 1.04181 1.17095 0.81134 0.91886 1.18502 1.25166 0.92930 0.94524 1.03501 1.67320 0.98867 1.33011 1.17001 1.19936 0.93687 0.89493 1.09484 1.17759 0.86645 0.83024 0.77435 1.90715 1.56563 1.45927 1.53686 1.48040 1.08911 1.06702 1.68087 1.22224 0.92616 0.88559 1.02143 1.18904 0.75661 0.95276 0.96458 1.21634 0.94774 1.49169 0.92999 0.93171 1.25898 0.96220 0.94163 1.02734 1.70058 1.03955 1.48195 1.34393 0.85342 0.77475 0.78987 0.78556 1.18631 1.20092 1.19877 1.26853 1.02760 1.02115 1.06459 1.83010 0.97173 1.03591 1.65654 1.44074 1.03482 1.07696 1.56377 1.22536 1.02943 0.77965 1.05447 0.89393 0.88621 0.89870 0.82344 0.84477 0.92349 0.92071 0.87688 0.95486 0.97803 0.92163 0.79267 0.88357 0.85553 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.09 71.23 0.72 0.31 16 2 C 0.06 0.80 6.89 41.17 0.28 1.08 16 3 C -0.22 -3.89 10.73 22.06 0.24 -3.66 16 4 C -0.13 -3.09 10.75 22.36 0.24 -2.85 16 5 C 0.03 0.62 6.85 40.24 0.28 0.89 16 6 C 0.11 3.05 7.40 87.31 0.65 3.69 16 7 N -0.45 -15.18 6.61 -180.04 -1.19 -16.38 16 8 C 0.01 0.35 6.45 40.69 0.26 0.61 16 9 C 0.57 28.23 7.64 86.62 0.66 28.90 16 10 O -0.59 -33.61 16.23 -4.11 -0.07 -33.67 16 11 N -0.59 -29.78 2.86 -855.19 -2.44 -32.23 16 12 C 0.09 3.52 9.43 127.77 1.21 4.72 16 13 C 0.26 15.28 5.15 85.63 0.44 15.72 16 14 C -0.55 -33.81 9.39 25.60 0.24 -33.57 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.54 5.46 84.65 0.46 1.01 16 17 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 18 Si 0.97 46.73 29.54 68.60 2.03 48.75 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 22 C -0.24 -7.43 10.56 67.11 0.71 -6.72 16 23 S 0.25 4.99 19.72 -56.49 -1.11 3.87 16 24 N -0.44 -6.92 3.17 -520.31 -1.65 -8.57 16 25 C 0.05 0.40 10.17 127.77 1.30 1.70 16 26 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.08 0.13 7.03 -2.38 -0.02 0.11 16 29 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 33 H 0.11 4.01 5.27 -2.39 -0.01 4.00 16 34 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.19 5.68 8.00 -2.91 -0.02 5.65 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.13 0.18 7.00 -2.39 -0.02 0.17 16 40 H 0.08 0.65 5.21 -8.97 -0.05 0.61 16 Total: -1.00 -82.79 350.49 4.56 -78.23 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.03 Total: 5.95 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 7.68 Total: 11.83 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -5.00 Total: -114.97 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.07 Total: -33.67 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.11 Total: 3.87 kcal Total: -82.79 4.56 -78.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159543274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.662 kcal (2) G-P(sol) polarization free energy of solvation -82.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds