Wall clock time and date at job start Tue Mar 31 2020 12:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47266 * 300.00307 * 3 2 1 6 6 H 1.48503 * 109.46689 * 60.00162 * 3 2 1 7 7 C 1.38630 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00091 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.35775 * 117.00059 * 174.98261 * 9 7 2 11 11 C 1.38735 * 120.08573 * 5.16824 * 10 9 7 12 12 C 1.38342 * 119.97616 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.92662 * 180.02562 * 12 11 10 14 14 C 1.38555 * 120.15211 * 0.02562 * 12 11 10 15 15 C 1.38186 * 120.17850 * 359.67735 * 14 12 11 16 16 C 1.38714 * 120.01766 * 0.60261 * 15 14 12 17 17 N 1.40084 * 120.07589 * 179.69912 * 16 15 14 18 18 C 1.34780 * 120.00147 * 335.18897 * 17 16 15 19 19 O 1.21295 * 119.99651 * 354.44959 * 18 17 16 20 20 C 1.50696 * 120.00009 * 174.16993 * 18 17 16 21 21 C 1.53002 * 109.46997 * 180.28143 * 20 18 17 22 22 N 1.46501 * 109.46744 * 180.02562 * 21 20 18 23 23 C 1.34949 * 126.03447 * 125.00236 * 22 21 20 24 24 C 1.35319 * 107.74534 * 179.97438 * 23 22 21 25 25 C 1.39874 * 107.92020 * 359.97438 * 24 23 22 26 26 N 1.30837 * 108.20009 * 359.74758 * 25 24 23 27 27 H 0.96995 * 120.00679 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.01663 * 359.97438 * 11 10 9 29 29 H 1.08007 * 119.91294 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.99328 * 180.29863 * 15 14 12 31 31 H 0.97001 * 120.00128 * 155.19935 * 17 16 15 32 32 H 1.09010 * 109.47253 * 300.27722 * 20 18 17 33 33 H 1.08997 * 109.47203 * 60.27746 * 20 18 17 34 34 H 1.08997 * 109.46874 * 299.99307 * 21 20 18 35 35 H 1.08997 * 109.47468 * 59.99765 * 21 20 18 36 36 H 1.07991 * 126.13340 * 359.94817 * 23 22 21 37 37 H 1.07998 * 126.04590 * 180.02562 * 24 23 22 38 38 H 1.07998 * 125.90014 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8908 2.3966 -1.2124 6 1 1.8908 2.3965 1.2126 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2004 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0706 -3.5044 -0.1069 11 6 3.4563 -3.4389 -0.1013 12 6 4.2035 -4.5980 -0.2104 13 9 5.5529 -4.5332 -0.2043 14 6 3.5711 -5.8254 -0.3257 15 6 2.1912 -5.8986 -0.3258 16 6 1.4349 -4.7404 -0.2227 17 7 0.0359 -4.8126 -0.2290 18 6 -0.5824 -5.8578 -0.8135 19 8 0.0660 -6.6835 -1.4211 20 6 -2.0784 -6.0041 -0.7070 21 6 -2.5212 -7.2683 -1.4463 22 7 -3.9757 -7.4101 -1.3432 23 6 -4.8358 -7.5400 -2.3749 24 6 -6.0833 -7.6443 -1.8613 25 6 -5.9821 -7.5764 -0.4679 26 7 -4.7185 -7.4418 -0.1560 27 1 -0.4851 0.8399 -0.0004 28 1 3.9517 -2.4833 -0.0128 29 1 4.1583 -6.7280 -0.4110 30 1 1.7014 -6.8573 -0.4110 31 1 -0.4879 -4.1102 0.1873 32 1 -2.3624 -6.0789 0.3428 33 1 -2.5612 -5.1345 -1.1528 34 1 -2.2374 -7.1935 -2.4960 35 1 -2.0384 -8.1379 -1.0005 36 1 -4.5753 -7.5571 -3.4228 37 1 -6.9959 -7.7603 -2.4270 38 1 -6.8044 -7.6299 0.2302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159560901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:27 Heat of formation + Delta-G solvation = 1.821453 kcal Electronic energy + Delta-G solvation = -25317.283285 eV Core-core repulsion = 21270.297328 eV Total energy + Delta-G solvation = -4046.985957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.30272 -41.24839 -40.26738 -38.74161 -36.44778 -34.43481 -34.18306 -32.46720 -30.76170 -29.90584 -29.39995 -28.20889 -25.59855 -24.75343 -22.54795 -21.69617 -21.22033 -20.70533 -19.96105 -18.42696 -17.98239 -17.61998 -16.77776 -16.49688 -16.01630 -15.30772 -15.20502 -14.98027 -14.90283 -14.43528 -14.32476 -14.14490 -13.77918 -13.71125 -13.52300 -13.18941 -12.98037 -12.85751 -12.42836 -12.36932 -12.22006 -11.73746 -11.55717 -11.42964 -11.06868 -10.79126 -10.74666 -10.55229 -9.93076 -9.87641 -9.58829 -9.43637 -9.02174 -8.73074 -7.95534 -7.15713 -6.65993 -4.23920 1.69714 1.77604 2.04682 2.32818 2.73398 2.79059 3.02352 3.04855 3.10243 3.38310 3.80240 4.27800 4.37630 4.60257 4.70589 4.77035 4.84376 4.91525 4.99455 5.05708 5.20889 5.32982 5.52921 5.54669 5.64506 5.68367 5.70514 5.87581 5.94506 6.13119 6.46684 6.52034 6.65300 6.84329 6.86188 6.87734 6.94820 7.12265 7.56272 7.58316 7.74599 7.79473 8.33697 8.80005 9.39247 10.51078 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.003281 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.594932 B = 8532.164614 C =10702.948558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.392 4.392 8 H 0.096 0.904 9 O -0.170 6.170 10 C 0.156 3.844 11 C -0.257 4.257 12 C 0.129 3.871 13 F -0.151 7.151 14 C -0.227 4.227 15 C -0.060 4.060 16 C 0.060 3.940 17 N -0.643 5.643 18 C 0.515 3.485 19 O -0.539 6.539 20 C -0.152 4.152 21 C 0.151 3.849 22 N -0.371 5.371 23 C 0.056 3.944 24 C -0.279 4.279 25 C 0.042 3.958 26 N -0.296 5.296 27 H 0.272 0.728 28 H 0.144 0.856 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.419 0.581 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.173 0.827 37 H 0.146 0.854 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -11.013 -2.498 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.073 6.073 10 C 0.100 3.900 11 C -0.278 4.278 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.247 4.247 15 C -0.080 4.080 16 C -0.034 4.034 17 N -0.286 5.286 18 C 0.302 3.698 19 O -0.418 6.418 20 C -0.192 4.192 21 C 0.030 3.970 22 N -0.153 5.153 23 C -0.090 4.090 24 C -0.309 4.309 25 C -0.144 4.144 26 N -0.117 5.117 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.256 0.744 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.191 0.809 37 H 0.163 0.837 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.366 -11.227 -1.953 13.053 hybrid contribution -0.118 1.295 -0.531 1.405 sum -6.484 -9.932 -2.484 12.119 Atomic orbital electron populations 1.70008 1.05952 1.28015 1.45295 1.25294 0.95920 0.98888 0.96080 0.85606 0.79279 0.79977 0.78408 1.18929 1.19992 1.19965 1.21398 0.92029 0.80265 1.53124 0.88703 1.83891 1.34035 1.11338 1.78042 1.18712 0.89529 0.86918 0.94800 1.20853 0.93403 0.98497 1.15057 1.17474 0.75975 0.94368 1.01304 1.91413 1.30115 1.97374 1.94070 1.20500 0.94625 0.95881 1.13712 1.20765 0.92279 0.97359 0.97586 1.16919 0.82115 0.91464 1.12942 1.43166 1.05420 1.24650 1.55393 1.20304 0.89479 0.81594 0.78392 1.90648 1.66949 1.42405 1.41788 1.21851 0.92929 0.99763 1.04705 1.21437 0.73913 0.98671 1.02995 1.48814 1.07063 1.55533 1.03923 1.22622 0.90352 1.01332 0.94743 1.21512 0.97635 1.17193 0.94552 1.23895 0.94611 0.99976 0.95926 1.77355 1.04447 1.23948 1.05969 0.91792 0.83891 0.85878 0.83494 0.74449 0.87170 0.87973 0.87603 0.88700 0.80940 0.83659 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.14 13.67 55.48 0.76 -22.39 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.46 29.55 -169.99 -5.02 14.43 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.18 9.49 30.88 0.29 -9.89 16 8 H 0.10 2.32 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.34 9.17 0.03 0.00 -4.34 16 10 C 0.16 3.52 6.66 -38.94 -0.26 3.26 16 11 C -0.26 -5.51 9.14 -39.36 -0.36 -5.87 16 12 C 0.13 2.53 7.29 -39.43 -0.29 2.24 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.23 -4.11 10.02 -39.48 -0.40 -4.51 16 15 C -0.06 -1.11 8.72 -39.42 -0.34 -1.45 16 16 C 0.06 1.20 6.45 -83.45 -0.54 0.66 16 17 N -0.64 -11.22 5.29 -9.72 -0.05 -11.27 16 18 C 0.52 7.88 7.64 -10.99 -0.08 7.79 16 19 O -0.54 -9.27 13.15 5.54 0.07 -9.19 16 20 C -0.15 -1.79 5.89 -27.88 -0.16 -1.96 16 21 C 0.15 1.63 5.80 -4.04 -0.02 1.60 16 22 N -0.37 -4.24 3.68 -61.37 -0.23 -4.46 16 23 C 0.06 0.53 11.45 -17.22 -0.20 0.34 16 24 C -0.28 -2.61 10.80 -40.01 -0.43 -3.04 16 25 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 26 N -0.30 -3.78 12.42 30.62 0.38 -3.40 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.14 3.07 5.63 -52.49 -0.30 2.77 16 29 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.15 2.60 5.79 -52.49 -0.30 2.30 16 31 H 0.42 7.15 8.34 -40.82 -0.34 6.81 16 32 H 0.11 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.01 8.03 -51.93 -0.42 0.59 16 35 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -30.59 340.30 -5.74 -36.33 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -3.72 Total: 11.56 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.10 Total: -9.59 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.86 Total: -41.52 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.59 -5.74 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159560901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.150 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds