Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31774 * 122.74900 * 2 1 4 4 C 1.29027 * 117.12216 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.17022 * 359.72733 * 4 3 2 6 6 C 1.33640 * 122.74834 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.03823 * 359.97438 * 6 2 1 8 8 N 1.46498 * 109.46961 * 90.00401 * 7 6 2 9 9 C 1.39252 * 119.99967 * 179.97438 * 8 7 6 10 10 N 1.32296 * 119.73426 * 359.97438 * 9 8 7 11 11 C 1.32016 * 121.67649 * 179.75305 * 10 9 8 12 12 C 1.38011 * 120.95588 * 0.53509 * 11 10 9 13 13 C 1.38853 * 119.36761 * 359.47629 * 12 11 10 14 14 C 1.38708 * 118.45967 * 0.25127 * 13 12 11 15 15 O 1.36007 * 120.49879 * 180.02562 * 14 13 12 16 16 C 1.42898 * 116.99949 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47474 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99783 * 22 20 18 24 24 H 1.48494 * 109.47166 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47078 * 329.99963 * 22 20 18 26 26 H 1.09000 * 109.46916 * 269.99719 * 1 2 3 27 27 H 1.09002 * 109.47063 * 29.99698 * 1 2 3 28 28 H 1.08997 * 109.47604 * 149.99469 * 1 2 3 29 29 H 1.08005 * 124.91385 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47017 * 330.00886 * 7 6 2 31 31 H 1.09000 * 109.47400 * 210.00832 * 7 6 2 32 32 H 0.97003 * 120.00337 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.52447 * 180.26419 * 11 10 9 34 34 H 1.08002 * 120.31999 * 179.75709 * 12 11 10 35 35 H 1.08004 * 120.77557 * 180.28159 * 13 12 11 36 36 H 1.09001 * 109.47624 * 299.99760 * 16 15 14 37 37 H 1.09002 * 109.47314 * 60.00403 * 16 15 14 38 38 H 1.09000 * 109.47280 * 300.00188 * 17 16 15 39 39 H 1.08999 * 109.47279 * 59.99805 * 17 16 15 40 40 H 0.96998 * 119.99736 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 16 3.9333 -0.6732 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 7 1.5075 -2.9838 -1.3818 9 6 1.0126 -4.2603 -1.6364 10 7 0.7044 -5.0579 -0.6269 11 6 0.2280 -6.2732 -0.8241 12 6 0.0425 -6.7646 -2.1004 13 6 0.3523 -5.9624 -3.1906 14 6 0.8460 -4.6878 -2.9544 15 8 1.1625 -3.8670 -3.9916 16 6 0.9615 -4.3804 -5.3099 17 6 1.3693 -3.3223 -6.3370 18 6 1.1568 -3.8635 -7.7273 19 1 0.7700 -4.8624 -7.8647 20 6 1.4572 -3.0837 -8.8240 21 7 1.9286 -1.8674 -8.6568 22 14 1.1944 -3.7548 -10.5474 23 1 -0.1808 -3.4269 -11.0019 24 1 2.1810 -3.1423 -11.4729 25 1 1.3741 -5.2289 -10.5373 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 4.2059 1.8026 -0.0002 30 1 0.7236 -2.5456 0.5135 31 1 2.3829 -3.1897 0.5130 32 1 1.7357 -2.3962 -2.1191 33 1 -0.0160 -6.8936 0.0256 34 1 -0.3442 -7.7618 -2.2498 35 1 0.2117 -6.3222 -4.1992 36 1 1.5693 -5.2746 -5.4482 37 1 -0.0905 -4.6315 -5.4456 38 1 0.7612 -2.4283 -6.1986 39 1 2.4212 -3.0707 -6.2015 40 1 2.1396 -1.3187 -9.4284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162253860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = 38.152282 kcal Electronic energy + Delta-G solvation = -23293.845612 eV Core-core repulsion = 19814.648254 eV Total energy + Delta-G solvation = -3479.197358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43064 -40.02061 -37.73527 -36.00063 -33.44718 -32.56707 -31.41767 -30.54378 -29.51707 -27.91754 -25.63972 -25.20088 -24.20420 -22.70341 -22.34978 -20.68574 -19.18513 -18.40937 -17.97172 -17.21391 -16.68925 -16.10025 -15.78446 -15.51437 -15.06283 -14.79398 -14.58837 -14.25472 -14.03806 -13.81246 -13.71546 -13.17828 -12.90741 -12.70481 -12.66311 -12.36755 -12.33660 -11.86908 -11.83940 -11.39217 -11.00609 -10.95637 -10.63203 -10.22140 -9.97448 -9.81739 -9.77012 -9.63223 -9.42228 -9.27825 -8.95041 -8.92431 -8.48327 -7.18238 -6.14035 -4.18916 0.44003 1.16804 1.53427 1.53743 1.56396 2.54944 3.24874 3.30980 3.33475 3.42484 3.69394 4.03374 4.06818 4.37338 4.53450 4.77125 4.88486 4.96095 5.08319 5.20270 5.22627 5.36404 5.42518 5.46071 5.53879 5.61878 5.66179 5.75375 5.95375 5.98147 6.10944 6.17888 6.34785 6.57886 6.64869 7.15275 7.35709 7.48910 7.52607 7.58673 7.77586 7.99585 8.19383 8.32685 8.86509 9.45779 10.97431 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.003422 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.077849 B = 8179.949332 C =10304.293628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 N -0.471 5.471 4 C 0.024 3.976 5 S 0.137 5.863 6 C -0.247 4.247 7 C 0.222 3.778 8 N -0.719 5.719 9 C 0.381 3.619 10 N -0.516 5.516 11 C 0.090 3.910 12 C -0.190 4.190 13 C -0.137 4.137 14 C 0.041 3.959 15 O -0.316 6.316 16 C 0.068 3.932 17 C 0.027 3.973 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.200 0.800 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -1.380 20.299 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 N -0.185 5.185 4 C -0.274 4.274 5 S 0.392 5.608 6 C -0.369 4.369 7 C 0.095 3.905 8 N -0.357 5.357 9 C 0.143 3.857 10 N -0.235 5.235 11 C -0.064 4.064 12 C -0.213 4.213 13 C -0.164 4.164 14 C -0.011 4.011 15 O -0.229 6.229 16 C -0.006 4.006 17 C -0.010 4.010 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.217 0.783 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.352 -0.666 21.220 21.273 hybrid contribution -0.949 -0.491 -2.320 2.554 sum 0.403 -1.157 18.900 18.939 Atomic orbital electron populations 1.20433 0.86853 1.03980 1.02965 1.20337 0.98413 0.86057 1.00016 1.66232 1.05058 1.31515 1.15683 1.28382 0.95331 1.00313 1.03390 1.84130 1.06750 1.03208 1.66761 1.25774 0.95415 1.00545 1.15143 1.19285 1.00392 0.86408 0.84396 1.44419 1.71502 1.12630 1.07176 1.17720 0.94694 0.87091 0.86180 1.67153 1.17958 1.06163 1.32263 1.22102 0.97029 0.90984 0.96308 1.21625 1.05617 1.01182 0.92868 1.21539 1.01007 0.93086 1.00748 1.19506 1.01676 0.91730 0.88228 1.86103 1.80967 1.41056 1.14784 1.23307 0.99575 0.99808 0.77905 1.19108 0.97966 0.93351 0.90603 1.20960 1.44641 1.00859 0.90113 0.92371 1.24980 0.94822 0.94809 0.99483 1.69970 1.43448 1.08546 1.30731 0.86493 0.78071 0.79155 0.83712 1.20471 1.21028 1.19741 0.90506 0.90341 0.90208 0.78315 0.89945 0.90957 0.74585 0.83107 0.85355 0.84314 0.93227 0.93221 0.95472 0.95475 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.82 36.01 0.35 -0.50 16 2 C 0.09 1.03 6.74 -84.23 -0.57 0.46 16 3 N -0.47 -5.91 10.53 -11.90 -0.13 -6.03 16 4 C 0.02 0.24 12.23 51.58 0.63 0.87 16 5 S 0.14 1.37 23.22 -107.50 -2.50 -1.13 16 6 C -0.25 -2.84 5.96 -35.92 -0.21 -3.05 16 7 C 0.22 2.59 5.63 -5.19 -0.03 2.56 16 8 N -0.72 -10.17 5.70 -61.44 -0.35 -10.52 16 9 C 0.38 5.96 7.50 -154.71 -1.16 4.80 16 10 N -0.52 -7.43 9.57 -12.28 -0.12 -7.55 16 11 C 0.09 1.12 11.17 -17.56 -0.20 0.92 16 12 C -0.19 -2.38 10.10 -39.44 -0.40 -2.78 16 13 C -0.14 -2.07 9.14 -39.18 -0.36 -2.43 16 14 C 0.04 0.70 6.73 -38.92 -0.26 0.44 16 15 O -0.32 -6.18 9.38 -19.76 -0.19 -6.37 16 16 C 0.07 1.41 4.70 37.16 0.17 1.59 16 17 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 18 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.84 7.35 -51.93 -0.38 0.46 16 29 H 0.20 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.08 0.92 7.43 -51.93 -0.39 0.54 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.42 6.33 7.81 -40.82 -0.32 6.01 16 33 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.14 2.01 6.44 -52.48 -0.34 1.67 16 36 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 37 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -31.31 357.51 -9.90 -41.22 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.15 Total: 4.17 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.59 Total: -9.77 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.14 Total: -49.54 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.19 Total: -6.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.31 -9.90 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162253860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.369 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds