Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31774 * 122.74900 * 2 1 4 4 C 1.29027 * 117.12216 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.17022 * 359.72733 * 4 3 2 6 6 C 1.33640 * 122.74834 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.03823 * 359.97438 * 6 2 1 8 8 N 1.46498 * 109.46961 * 90.00401 * 7 6 2 9 9 C 1.39252 * 119.99967 * 179.97438 * 8 7 6 10 10 N 1.32296 * 119.73426 * 359.97438 * 9 8 7 11 11 C 1.32016 * 121.67649 * 179.75305 * 10 9 8 12 12 C 1.38011 * 120.95588 * 0.53509 * 11 10 9 13 13 C 1.38853 * 119.36761 * 359.47629 * 12 11 10 14 14 C 1.38708 * 118.45967 * 0.25127 * 13 12 11 15 15 O 1.36007 * 120.49879 * 180.02562 * 14 13 12 16 16 C 1.42898 * 116.99949 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47474 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99783 * 22 20 18 24 24 H 1.48494 * 109.47166 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47078 * 329.99963 * 22 20 18 26 26 H 1.09000 * 109.46916 * 269.99719 * 1 2 3 27 27 H 1.09002 * 109.47063 * 29.99698 * 1 2 3 28 28 H 1.08997 * 109.47604 * 149.99469 * 1 2 3 29 29 H 1.08005 * 124.91385 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47017 * 330.00886 * 7 6 2 31 31 H 1.09000 * 109.47400 * 210.00832 * 7 6 2 32 32 H 0.97003 * 120.00337 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.52447 * 180.26419 * 11 10 9 34 34 H 1.08002 * 120.31999 * 179.75709 * 12 11 10 35 35 H 1.08004 * 120.77557 * 180.28159 * 13 12 11 36 36 H 1.09001 * 109.47624 * 299.99760 * 16 15 14 37 37 H 1.09002 * 109.47314 * 60.00403 * 16 15 14 38 38 H 1.09000 * 109.47280 * 300.00188 * 17 16 15 39 39 H 1.08999 * 109.47279 * 59.99805 * 17 16 15 40 40 H 0.96998 * 119.99736 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 16 3.9333 -0.6732 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 7 1.5075 -2.9838 -1.3818 9 6 1.0126 -4.2603 -1.6364 10 7 0.7044 -5.0579 -0.6269 11 6 0.2280 -6.2732 -0.8241 12 6 0.0425 -6.7646 -2.1004 13 6 0.3523 -5.9624 -3.1906 14 6 0.8460 -4.6878 -2.9544 15 8 1.1625 -3.8670 -3.9916 16 6 0.9615 -4.3804 -5.3099 17 6 1.3693 -3.3223 -6.3370 18 6 1.1568 -3.8635 -7.7273 19 1 0.7700 -4.8624 -7.8647 20 6 1.4572 -3.0837 -8.8240 21 7 1.9286 -1.8674 -8.6568 22 14 1.1944 -3.7548 -10.5474 23 1 -0.1808 -3.4269 -11.0019 24 1 2.1810 -3.1423 -11.4729 25 1 1.3741 -5.2289 -10.5373 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 4.2059 1.8026 -0.0002 30 1 0.7236 -2.5456 0.5135 31 1 2.3829 -3.1897 0.5130 32 1 1.7357 -2.3962 -2.1191 33 1 -0.0160 -6.8936 0.0256 34 1 -0.3442 -7.7618 -2.2498 35 1 0.2117 -6.3222 -4.1992 36 1 1.5693 -5.2746 -5.4482 37 1 -0.0905 -4.6315 -5.4456 38 1 0.7612 -2.4283 -6.1986 39 1 2.4212 -3.0707 -6.2015 40 1 2.1396 -1.3187 -9.4284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162253860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = 18.946675 kcal Electronic energy + Delta-G solvation = -23294.678430 eV Core-core repulsion = 19814.648254 eV Total energy + Delta-G solvation = -3480.030176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57138 -40.92323 -39.10370 -37.01975 -35.48883 -33.51406 -32.77243 -32.03249 -30.74185 -28.92485 -27.15927 -26.38425 -25.22761 -24.03771 -23.57271 -22.29506 -20.10535 -19.42749 -19.16133 -18.53980 -17.94132 -17.79651 -17.04605 -16.69373 -16.48879 -15.97081 -15.81779 -15.38946 -15.22241 -14.93291 -14.59408 -14.35407 -14.26091 -14.14042 -13.63089 -13.58211 -13.50470 -13.21815 -13.17610 -12.76693 -12.71002 -12.41657 -12.25780 -11.73711 -11.62195 -11.44145 -11.21749 -10.68604 -10.63622 -10.62766 -10.32748 -10.14290 -9.77084 -8.32530 -8.27237 -6.40716 -0.40557 0.34948 0.39403 0.45929 0.72433 1.40707 1.42475 1.53551 1.66223 2.22578 2.36927 2.47490 2.97163 3.07634 3.25377 3.58325 3.79121 3.99318 4.00173 4.07723 4.21783 4.26325 4.27973 4.39244 4.53605 4.57027 4.65694 4.67843 4.74584 4.80676 4.90643 5.08790 5.26619 5.30053 5.32447 5.47139 5.58066 5.69931 6.02347 6.10456 6.24350 6.60445 6.67350 6.74250 7.21422 7.29679 8.85634 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.003422 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.077849 B = 8179.949332 C =10304.293628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.074 3.926 3 N -0.503 5.503 4 C 0.028 3.972 5 S 0.157 5.843 6 C -0.263 4.263 7 C 0.230 3.770 8 N -0.722 5.722 9 C 0.372 3.628 10 N -0.523 5.523 11 C 0.099 3.901 12 C -0.186 4.186 13 C -0.139 4.139 14 C -0.001 4.001 15 O -0.336 6.336 16 C 0.088 3.912 17 C 0.031 3.969 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.259 1.259 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.232 0.768 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.058 0.942 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -3.423 20.988 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 N -0.217 5.217 4 C -0.269 4.269 5 S 0.412 5.588 6 C -0.385 4.385 7 C 0.104 3.896 8 N -0.358 5.358 9 C 0.135 3.865 10 N -0.242 5.242 11 C -0.056 4.056 12 C -0.208 4.208 13 C -0.165 4.165 14 C -0.053 4.053 15 O -0.249 6.249 16 C 0.013 3.987 17 C -0.006 4.006 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.797 3.203 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.182 1.182 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.208 0.792 34 H 0.181 0.819 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.903 -2.718 21.946 22.133 hybrid contribution -0.791 0.111 -2.379 2.509 sum 0.112 -2.607 19.568 19.741 Atomic orbital electron populations 1.20437 0.86234 1.03418 1.03885 1.20598 0.99171 0.86276 0.99972 1.66279 1.06156 1.31946 1.17319 1.28980 0.95175 1.01325 1.01421 1.84028 1.05555 1.03034 1.66218 1.25787 0.96414 1.00289 1.15988 1.19269 1.00668 0.86540 0.83117 1.44536 1.71215 1.12257 1.07816 1.17869 0.94912 0.87703 0.86022 1.67283 1.18342 1.06976 1.31614 1.22866 0.94602 0.90352 0.97763 1.21997 1.04606 1.02254 0.91978 1.21774 1.00228 0.92584 1.01923 1.19769 1.04852 0.92802 0.87850 1.86019 1.82163 1.42116 1.14639 1.22810 0.99947 0.97881 0.78014 1.18924 0.95560 0.93789 0.92332 1.21404 1.44469 1.01487 0.91000 0.91109 1.26004 0.94271 0.94964 1.04280 1.70116 1.44586 1.10105 1.32165 0.85322 0.78154 0.79037 0.77795 1.19615 1.20759 1.18248 0.88817 0.90792 0.90769 0.75186 0.89507 0.90770 0.75639 0.79161 0.81857 0.84065 0.92347 0.92344 0.98486 0.98421 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.82 71.24 0.70 -0.99 16 2 C 0.07 1.79 6.74 41.52 0.28 2.07 16 3 N -0.50 -12.54 10.53 -191.55 -2.02 -14.56 16 4 C 0.03 0.54 12.23 130.65 1.60 2.14 16 5 S 0.16 3.05 23.22 -56.49 -1.31 1.74 16 6 C -0.26 -6.08 5.96 24.64 0.15 -5.93 16 7 C 0.23 5.36 5.63 85.63 0.48 5.84 16 8 N -0.72 -20.89 5.70 -348.28 -1.98 -22.88 16 9 C 0.37 11.57 7.50 133.11 1.00 12.56 16 10 N -0.52 -14.16 9.57 -192.78 -1.84 -16.01 16 11 C 0.10 2.14 11.17 84.61 0.95 3.08 16 12 C -0.19 -4.07 10.10 22.36 0.23 -3.85 16 13 C -0.14 -3.99 9.14 22.53 0.21 -3.79 16 14 C 0.00 -0.05 6.73 22.70 0.15 0.10 16 15 O -0.34 -13.63 9.38 -93.63 -0.88 -14.51 16 16 C 0.09 3.74 4.70 71.98 0.34 4.08 16 17 C 0.03 1.67 5.34 29.85 0.16 1.83 16 18 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 19 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 20 C 0.00 0.19 5.46 84.66 0.46 0.66 16 21 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 22 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.61 7.35 -2.39 -0.02 1.59 16 29 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.09 1.92 7.43 -2.38 -0.02 1.91 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 13.09 7.81 -92.71 -0.72 12.36 16 33 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.14 3.90 6.44 -2.91 -0.02 3.88 16 36 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 37 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -69.24 357.51 1.55 -67.69 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.35 Total: 21.72 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.93 Total: -12.35 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -5.56 Total: -109.41 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.88 Total: -14.51 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -69.24 1.55 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162253860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.636 kcal (2) G-P(sol) polarization free energy of solvation -69.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds