Wall clock time and date at job start Tue Mar 31 2020 12:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28879 * 124.77037 * 2 1 4 4 C 1.32439 * 117.11251 * 180.02562 * 3 2 1 5 5 C 1.48554 * 122.94253 * 179.97438 * 4 3 2 6 6 C 1.36536 * 126.25901 * 185.05493 * 5 4 3 7 7 N 1.35547 * 108.50548 * 180.20712 * 6 5 4 8 8 H 0.97006 * 125.57931 * 179.75106 * 7 6 5 9 9 C 1.37647 * 108.83447 * 359.62517 * 7 6 5 10 10 C 1.46698 * 126.01235 * 180.14968 * 9 7 6 11 11 O 1.21696 * 120.00554 * 180.26534 * 10 9 7 12 12 N 1.34779 * 119.99758 * 0.25834 * 10 9 7 13 13 C 1.46498 * 119.99891 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47021 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46859 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00000 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99910 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99819 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99725 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47376 * 90.00027 * 20 18 16 22 22 H 1.48500 * 109.46648 * 209.99761 * 20 18 16 23 23 H 1.48501 * 109.47113 * 329.99423 * 20 18 16 24 24 C 1.36706 * 107.97894 * 0.37063 * 9 7 6 25 25 C 1.34701 * 114.12445 * 0.26913 * 4 3 2 26 26 S 1.70917 * 124.77932 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47292 * 90.00664 * 1 2 3 28 28 H 1.09012 * 109.46579 * 210.00044 * 1 2 3 29 29 H 1.08998 * 109.47565 * 329.99810 * 1 2 3 30 30 H 1.08002 * 125.74138 * 359.93288 * 6 5 4 31 31 H 0.96998 * 120.00272 * 0.02562 * 12 10 9 32 32 H 1.09003 * 109.47118 * 300.00009 * 13 12 10 33 33 H 1.09001 * 109.47301 * 60.00150 * 13 12 10 34 34 H 1.08995 * 109.47028 * 300.00134 * 14 13 12 35 35 H 1.09001 * 109.47141 * 59.99751 * 14 13 12 36 36 H 1.08995 * 109.47612 * 300.00123 * 15 14 13 37 37 H 1.08995 * 109.46746 * 60.00357 * 15 14 13 38 38 H 0.97005 * 119.99364 * 180.02562 * 19 18 16 39 39 H 1.08002 * 126.40615 * 179.77706 * 24 9 7 40 40 H 1.07999 * 126.05774 * 179.73130 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0587 0.0000 4 6 3.5545 0.8822 -0.0005 5 6 4.5213 2.0101 -0.0012 6 6 5.8794 1.9095 -0.0987 7 7 6.4073 3.1573 -0.0581 8 1 7.3520 3.3723 -0.1052 9 6 5.3830 4.0695 0.0579 10 6 5.5304 5.5273 0.1309 11 8 4.5455 6.2339 0.2378 12 7 6.7568 6.0839 0.0799 13 6 6.9041 7.5396 0.1534 14 6 8.3872 7.9069 0.0734 15 6 8.5410 9.4273 0.1495 16 6 10.0019 9.7890 0.0713 17 1 10.7462 9.0121 -0.0236 18 6 10.3883 11.1116 0.1210 19 7 11.6632 11.4271 0.0533 20 14 9.1009 12.4550 0.2859 21 1 8.8548 12.7309 1.7241 22 1 9.5871 13.6906 -0.3790 23 1 7.8376 12.0116 -0.3564 24 6 4.2045 3.3779 0.0981 25 6 3.9364 -0.4096 -0.0068 26 16 2.4819 -1.4038 -0.0006 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 6.4391 0.9902 -0.1883 31 1 7.5419 5.5208 -0.0056 32 1 6.3706 8.0012 -0.6776 33 1 6.4906 7.8996 1.0955 34 1 8.9211 7.4453 0.9040 35 1 8.8004 7.5470 -0.8689 36 1 8.0072 9.8886 -0.6813 37 1 8.1278 9.7874 1.0916 38 1 11.9350 12.3576 0.0887 39 1 3.2153 3.8017 0.1891 40 1 4.9538 -0.7717 -0.0124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:08 Heat of formation + Delta-G solvation = 36.188814 kcal Electronic energy + Delta-G solvation = -22203.044954 eV Core-core repulsion = 18723.762453 eV Total energy + Delta-G solvation = -3479.282501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69366 -39.86969 -38.98582 -35.62448 -33.54624 -33.16944 -31.59612 -30.96638 -29.86009 -28.28940 -27.06109 -24.53598 -23.62191 -22.01247 -21.10350 -20.69210 -20.20899 -19.50189 -18.94645 -17.35842 -16.78520 -16.00483 -15.66769 -15.57805 -15.44930 -15.30005 -14.59889 -14.30323 -14.13425 -13.68308 -13.66772 -13.61984 -13.34915 -12.99783 -12.75371 -12.71341 -12.44125 -12.06641 -11.97011 -11.76839 -11.14854 -10.93358 -10.36833 -10.05859 -10.02331 -9.93075 -9.85417 -9.72115 -9.69539 -9.27295 -9.06779 -8.76301 -8.58862 -8.17835 -6.09853 -4.08917 0.33441 1.03832 1.29908 1.40822 1.89622 2.73479 3.10167 3.17717 3.29316 3.37096 3.41232 3.41507 3.71071 4.41581 4.55298 4.62607 4.75349 4.88436 4.92566 4.97667 5.05233 5.24319 5.26530 5.39919 5.48106 5.56148 5.58857 5.81805 5.94156 6.00041 6.23128 6.34735 6.37506 6.54239 6.63725 6.71868 7.00295 7.17612 7.31267 7.48069 7.51827 7.72158 8.17774 8.45988 8.93249 9.52337 11.03253 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.041249 B = 0.001788 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.637929 B =15652.653125 C =16298.165334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.465 5.465 4 C 0.161 3.839 5 C -0.123 4.123 6 C 0.051 3.949 7 N -0.535 5.535 8 H 0.422 0.578 9 C -0.046 4.046 10 C 0.583 3.417 11 O -0.528 6.528 12 N -0.726 5.726 13 C 0.114 3.886 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.524 4.524 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.072 4.072 25 C -0.270 4.270 26 S 0.109 5.891 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.154 0.846 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 -29.928 -0.509 34.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.224 4.224 3 N -0.179 5.179 4 C 0.030 3.970 5 C -0.133 4.133 6 C -0.088 4.088 7 N -0.131 5.131 8 H 0.260 0.740 9 C -0.158 4.158 10 C 0.369 3.631 11 O -0.405 6.405 12 N -0.376 5.376 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.098 4.098 25 C -0.409 4.409 26 S 0.363 5.637 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.193 0.807 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.171 0.829 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.594 -29.690 -0.429 35.034 hybrid contribution 1.111 1.212 0.015 1.645 sum -17.482 -28.478 -0.415 33.418 Atomic orbital electron populations 1.20479 0.85078 1.04353 1.04043 1.26992 1.01838 0.90758 1.02807 1.66130 1.04371 1.31337 1.16099 1.18001 0.88224 0.90833 0.99933 1.17251 0.90480 0.91397 1.14147 1.21891 0.93364 0.88118 1.05421 1.41952 1.09068 1.05824 1.56265 0.74002 1.20261 0.88337 0.89688 1.17492 1.17074 0.83783 0.85195 0.77045 1.90856 1.37913 1.61745 1.49957 1.46057 1.07380 1.09481 1.74689 1.21713 0.99243 0.77587 1.02265 1.21717 0.91599 1.00181 1.01644 1.19505 0.98174 0.90512 0.96736 1.21080 0.90778 0.93427 1.50864 0.91056 1.25029 0.95211 0.98788 0.94432 1.69913 1.15082 1.18358 1.50755 0.86771 0.82443 0.81406 0.78672 1.20211 1.21328 1.18865 1.21065 0.97434 0.91223 1.00103 1.26774 1.02909 0.95402 1.15852 1.83889 0.97801 1.12839 1.69145 0.89453 0.90059 0.89056 0.80686 0.77404 0.91417 0.91419 0.92134 0.92110 0.96212 0.96654 0.92665 0.82865 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 36.00 0.38 -0.04 16 2 C 0.06 0.47 7.37 -13.52 -0.10 0.37 16 3 N -0.46 -5.36 10.44 -8.39 -0.09 -5.45 16 4 C 0.16 1.73 6.71 -84.60 -0.57 1.16 16 5 C -0.12 -1.34 6.08 -105.31 -0.64 -1.98 16 6 C 0.05 0.40 11.46 -16.52 -0.19 0.21 16 7 N -0.54 -4.39 5.98 -9.40 -0.06 -4.45 16 8 H 0.42 2.17 8.16 -40.82 -0.33 1.84 16 9 C -0.05 -0.56 7.00 -82.39 -0.58 -1.14 16 10 C 0.58 8.73 7.79 -12.84 -0.10 8.63 16 11 O -0.53 -10.02 16.87 5.19 0.09 -9.93 16 12 N -0.73 -9.72 5.55 -61.61 -0.34 -10.06 16 13 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 14 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 17 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 20 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 C -0.07 -0.94 10.46 -39.19 -0.41 -1.35 16 25 C -0.27 -2.15 10.85 29.48 0.32 -1.83 16 26 S 0.11 0.74 23.16 -107.50 -2.49 -1.75 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.18 0.66 7.75 -52.49 -0.41 0.26 16 31 H 0.39 3.97 7.57 -40.82 -0.31 3.66 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 37 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.18 0.89 7.72 -52.49 -0.41 0.48 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -35.94 359.79 -9.14 -45.08 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.19 Total: 0.71 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.59 Total: -9.79 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.29 Total: -46.71 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.94 -9.14 -45.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.270 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds