Wall clock time and date at job start Tue Mar 31 2020 12:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99673 * 2 1 4 4 H 1.48509 * 109.47076 * 240.00198 * 3 2 1 5 5 H 1.48503 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47390 * 120.00577 * 3 2 1 7 7 C 1.37876 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99589 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46914 * 175.49396 * 9 7 2 11 11 C 1.46906 * 110.99922 * 75.60140 * 10 9 7 12 12 C 1.50692 * 109.47239 * 189.99862 * 11 10 9 13 13 N 1.29595 * 118.88378 * 359.73416 * 12 11 10 14 14 C 1.37009 * 121.68474 * 179.72550 * 13 12 11 15 15 C 1.39906 * 129.15618 * 180.20483 * 14 13 12 16 16 C 1.32761 * 115.82619 * 180.30344 * 15 14 13 17 17 S 1.75588 * 110.53750 * 0.02562 * 16 15 14 18 18 C 1.39108 * 118.19088 * 0.52896 * 14 13 12 19 19 C 1.41551 * 119.09422 * 359.74530 * 18 14 13 20 20 O 1.21957 * 120.63756 * 180.02562 * 19 18 14 21 21 N 1.34885 * 118.72158 * 0.02562 * 19 18 14 22 22 H 0.96995 * 119.96512 * 180.02562 * 21 19 18 23 23 C 1.46899 * 111.00235 * 199.55222 * 10 9 7 24 24 C 1.52997 * 109.47211 * 72.05154 * 23 10 9 25 25 C 1.53005 * 117.50216 * 243.73330 * 24 23 10 26 26 C 1.53000 * 117.50308 * 175.07124 * 24 23 10 27 27 H 0.96996 * 120.00249 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47256 * 55.49719 * 9 7 2 29 29 H 1.09000 * 109.47494 * 295.49351 * 9 7 2 30 30 H 1.08996 * 109.47053 * 310.00090 * 11 10 9 31 31 H 1.09000 * 109.47155 * 69.99652 * 11 10 9 32 32 H 1.08006 * 122.09140 * 0.32911 * 15 14 13 33 33 H 1.08000 * 124.73228 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.47958 * 192.05527 * 23 10 9 35 35 H 1.09011 * 109.47284 * 312.05213 * 23 10 9 36 36 H 1.08998 * 115.54789 * 29.39742 * 24 23 10 37 37 H 1.08997 * 117.49729 * 359.97438 * 25 24 23 38 38 H 1.09001 * 117.49797 * 145.01899 * 25 24 23 39 39 H 1.09001 * 117.49991 * 214.98280 * 26 24 23 40 40 H 1.08998 * 117.49810 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2020 -3.6135 -0.1100 11 6 2.8926 -3.8435 1.1661 12 6 4.0236 -4.8171 0.9569 13 7 4.2255 -5.2963 -0.2302 14 6 5.2402 -6.1806 -0.4862 15 6 5.5995 -6.7871 -1.6947 16 6 6.6356 -7.6155 -1.6405 17 16 7.2677 -7.7051 -0.0048 18 6 6.0559 -6.5691 0.5715 19 6 5.8123 -6.0364 1.8602 20 8 6.5103 -6.3573 2.8074 21 7 4.7934 -5.1672 2.0203 22 1 4.6106 -4.7909 2.8954 23 6 1.5304 -4.8352 -0.5727 24 6 1.1711 -4.6904 -2.0528 25 6 -0.3133 -4.6979 -2.4236 26 6 0.5649 -5.9070 -2.7551 27 1 -0.4850 0.8400 0.0004 28 1 0.5650 -2.5225 -0.8472 29 1 0.6867 -2.5929 0.9272 30 1 3.2900 -2.8997 1.5394 31 1 2.1895 -4.2537 1.8910 32 1 5.0676 -6.5932 -2.6145 33 1 7.0340 -8.1585 -2.4847 34 1 2.1967 -5.6879 -0.4423 35 1 0.6214 -4.9924 0.0082 36 1 1.8323 -4.0500 -2.6365 37 1 -1.0339 -4.8065 -1.6130 38 1 -0.6285 -4.0628 -3.2515 39 1 0.8271 -6.0669 -3.8009 40 1 0.4217 -6.8106 -2.1625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174691871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:18 Heat of formation + Delta-G solvation = 65.369737 kcal Electronic energy + Delta-G solvation = -24324.442778 eV Core-core repulsion = 20846.425657 eV Total energy + Delta-G solvation = -3478.017121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54915 -38.26947 -37.72639 -36.66380 -35.18638 -32.92245 -32.48541 -30.31430 -27.81170 -27.63775 -25.08985 -24.30934 -22.78901 -21.89930 -21.28802 -20.74359 -19.58965 -19.15869 -18.39599 -16.72220 -16.46621 -16.26639 -16.09806 -15.40636 -14.75136 -14.65444 -14.30986 -14.20169 -13.87919 -13.56754 -13.37288 -13.16306 -12.89556 -12.58125 -12.18413 -11.98753 -11.38129 -11.28973 -11.20219 -11.12218 -10.79308 -10.76081 -10.68885 -10.40327 -10.13005 -10.00946 -9.82997 -9.76588 -9.33865 -9.15264 -9.07984 -8.45887 -7.89802 -7.37202 -6.06146 -4.08017 0.16706 1.25325 1.44819 1.78595 2.29013 2.75190 3.30636 3.35860 3.38701 3.58088 3.82489 4.25715 4.37144 4.41505 4.66142 4.77730 4.97910 5.10286 5.28951 5.32027 5.41938 5.54023 5.65214 5.71103 5.82169 5.87480 5.95816 5.96193 6.00222 6.19879 6.29803 6.31993 6.42289 6.52167 6.54934 6.86540 7.13381 7.27871 7.72440 7.76405 7.86489 8.06622 8.11946 8.46046 8.99162 9.56619 11.03878 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.004100 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.831820 B = 6827.946796 C = 8120.674519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.509 5.509 11 C 0.104 3.896 12 C 0.405 3.595 13 N -0.468 5.468 14 C 0.179 3.821 15 C -0.121 4.121 16 C -0.178 4.178 17 S 0.190 5.810 18 C -0.346 4.346 19 C 0.575 3.425 20 O -0.540 6.540 21 N -0.637 5.637 22 H 0.422 0.578 23 C 0.088 3.912 24 C -0.115 4.115 25 C -0.183 4.183 26 C -0.189 4.189 27 H 0.262 0.738 28 H 0.047 0.953 29 H -0.010 1.010 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 -14.903 -2.132 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.234 5.234 11 C -0.027 4.027 12 C 0.135 3.865 13 N -0.190 5.190 14 C 0.054 3.946 15 C -0.152 4.152 16 C -0.315 4.315 17 S 0.454 5.546 18 C -0.468 4.468 19 C 0.369 3.631 20 O -0.419 6.419 21 N -0.281 5.281 22 H 0.261 0.739 23 C -0.041 4.041 24 C -0.134 4.134 25 C -0.221 4.221 26 C -0.227 4.227 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.007 0.993 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.195 0.805 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.152 -15.643 -2.146 18.251 hybrid contribution -0.989 1.541 0.800 1.998 sum 8.164 -14.102 -1.347 16.350 Atomic orbital electron populations 1.69935 1.05998 1.26902 1.50741 1.24945 0.94796 0.99148 0.95411 0.86622 0.79483 0.82994 0.78646 1.20197 1.21416 1.20368 1.21115 0.93431 0.89915 1.50319 0.92002 1.19846 0.90000 0.86787 0.96576 1.61862 1.31934 1.05537 1.24031 1.21119 0.90992 0.96094 0.94459 1.23567 0.90404 0.90881 0.81694 1.68829 1.19094 1.13550 1.17548 1.19346 0.90488 0.92571 0.92236 1.19563 0.98863 0.98584 0.98168 1.25764 1.00650 1.03614 1.01517 1.83993 1.30040 1.41012 0.99553 1.24522 1.09367 1.14257 0.98669 1.15785 0.80186 0.79046 0.88095 1.90962 1.47594 1.60896 1.42438 1.44433 1.28937 1.40782 1.13971 0.73854 1.21703 0.95862 0.93667 0.92830 1.22117 0.95099 0.99587 0.96553 1.22998 0.94676 1.00980 1.03397 1.22906 1.06211 0.92870 1.00698 0.92859 0.93521 0.99272 0.86175 0.92257 0.82597 0.80462 0.90343 0.96488 0.86955 0.89415 0.89287 0.89500 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.17 8.61 -34.44 -0.30 -13.46 16 8 H 0.06 1.59 7.66 -52.49 -0.40 1.19 16 9 C 0.19 4.49 4.59 -4.97 -0.02 4.47 16 10 N -0.51 -9.67 4.06 -237.52 -0.96 -10.64 16 11 C 0.10 1.64 5.23 -4.98 -0.03 1.62 16 12 C 0.40 5.99 7.22 -155.40 -1.12 4.87 16 13 N -0.47 -7.40 7.41 -8.40 -0.06 -7.46 16 14 C 0.18 2.60 7.01 -84.60 -0.59 2.01 16 15 C -0.12 -1.40 10.15 -40.83 -0.41 -1.81 16 16 C -0.18 -1.65 11.13 28.86 0.32 -1.33 16 17 S 0.19 2.17 23.30 -107.50 -2.50 -0.34 16 18 C -0.35 -5.10 6.49 -38.00 -0.25 -5.35 16 19 C 0.57 9.02 7.76 -14.95 -0.12 8.90 16 20 O -0.54 -9.70 17.97 4.96 0.09 -9.61 16 21 N -0.64 -8.56 5.28 -12.13 -0.06 -8.63 16 22 H 0.42 4.50 8.78 -40.82 -0.36 4.14 16 23 C 0.09 1.48 4.72 -3.83 -0.02 1.46 16 24 C -0.11 -1.90 4.97 -90.62 -0.45 -2.35 16 25 C -0.18 -2.84 10.00 -26.69 -0.27 -3.11 16 26 C -0.19 -2.57 10.25 -26.69 -0.27 -2.84 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 1.19 6.98 -51.93 -0.36 0.83 16 29 H -0.01 -0.26 8.00 -51.93 -0.42 -0.67 16 30 H 0.12 1.95 7.32 -51.93 -0.38 1.57 16 31 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.08 1.26 5.64 -51.93 -0.29 0.97 16 35 H 0.02 0.29 7.79 -51.92 -0.40 -0.11 16 36 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.09 1.36 8.03 -51.93 -0.42 0.95 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -31.00 351.05 -11.25 -42.24 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.13 Total: 3.35 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.62 Total: -5.45 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.35 Total: -51.22 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.50 Total: -0.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.00 -11.25 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174691871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.614 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds