Wall clock time and date at job start Tue Mar 31 2020 12:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99673 * 2 1 4 4 H 1.48509 * 109.47076 * 240.00198 * 3 2 1 5 5 H 1.48503 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47390 * 120.00577 * 3 2 1 7 7 C 1.37876 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99589 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46914 * 175.49396 * 9 7 2 11 11 C 1.46906 * 110.99922 * 75.60140 * 10 9 7 12 12 C 1.50692 * 109.47239 * 189.99862 * 11 10 9 13 13 N 1.29595 * 118.88378 * 359.73416 * 12 11 10 14 14 C 1.37009 * 121.68474 * 179.72550 * 13 12 11 15 15 C 1.39906 * 129.15618 * 180.20483 * 14 13 12 16 16 C 1.32761 * 115.82619 * 180.30344 * 15 14 13 17 17 S 1.75588 * 110.53750 * 0.02562 * 16 15 14 18 18 C 1.39108 * 118.19088 * 0.52896 * 14 13 12 19 19 C 1.41551 * 119.09422 * 359.74530 * 18 14 13 20 20 O 1.21957 * 120.63756 * 180.02562 * 19 18 14 21 21 N 1.34885 * 118.72158 * 0.02562 * 19 18 14 22 22 H 0.96995 * 119.96512 * 180.02562 * 21 19 18 23 23 C 1.46899 * 111.00235 * 199.55222 * 10 9 7 24 24 C 1.52997 * 109.47211 * 72.05154 * 23 10 9 25 25 C 1.53005 * 117.50216 * 243.73330 * 24 23 10 26 26 C 1.53000 * 117.50308 * 175.07124 * 24 23 10 27 27 H 0.96996 * 120.00249 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47256 * 55.49719 * 9 7 2 29 29 H 1.09000 * 109.47494 * 295.49351 * 9 7 2 30 30 H 1.08996 * 109.47053 * 310.00090 * 11 10 9 31 31 H 1.09000 * 109.47155 * 69.99652 * 11 10 9 32 32 H 1.08006 * 122.09140 * 0.32911 * 15 14 13 33 33 H 1.08000 * 124.73228 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.47958 * 192.05527 * 23 10 9 35 35 H 1.09011 * 109.47284 * 312.05213 * 23 10 9 36 36 H 1.08998 * 115.54789 * 29.39742 * 24 23 10 37 37 H 1.08997 * 117.49729 * 359.97438 * 25 24 23 38 38 H 1.09001 * 117.49797 * 145.01899 * 25 24 23 39 39 H 1.09001 * 117.49991 * 214.98280 * 26 24 23 40 40 H 1.08998 * 117.49810 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2020 -3.6135 -0.1100 11 6 2.8926 -3.8435 1.1661 12 6 4.0236 -4.8171 0.9569 13 7 4.2255 -5.2963 -0.2302 14 6 5.2402 -6.1806 -0.4862 15 6 5.5995 -6.7871 -1.6947 16 6 6.6356 -7.6155 -1.6405 17 16 7.2677 -7.7051 -0.0048 18 6 6.0559 -6.5691 0.5715 19 6 5.8123 -6.0364 1.8602 20 8 6.5103 -6.3573 2.8074 21 7 4.7934 -5.1672 2.0203 22 1 4.6106 -4.7909 2.8954 23 6 1.5304 -4.8352 -0.5727 24 6 1.1711 -4.6904 -2.0528 25 6 -0.3133 -4.6979 -2.4236 26 6 0.5649 -5.9070 -2.7551 27 1 -0.4850 0.8400 0.0004 28 1 0.5650 -2.5225 -0.8472 29 1 0.6867 -2.5929 0.9272 30 1 3.2900 -2.8997 1.5394 31 1 2.1895 -4.2537 1.8910 32 1 5.0676 -6.5932 -2.6145 33 1 7.0340 -8.1585 -2.4847 34 1 2.1967 -5.6879 -0.4423 35 1 0.6214 -4.9924 0.0082 36 1 1.8323 -4.0500 -2.6365 37 1 -1.0339 -4.8065 -1.6130 38 1 -0.6285 -4.0628 -3.2515 39 1 0.8271 -6.0669 -3.8009 40 1 0.4217 -6.8106 -2.1625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174691871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:18 Heat of formation + Delta-G solvation = 46.385327 kcal Electronic energy + Delta-G solvation = -24325.266003 eV Core-core repulsion = 20846.425657 eV Total energy + Delta-G solvation = -3478.840347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.68504 -39.57794 -38.91320 -37.77204 -36.58128 -34.59566 -33.87748 -31.49023 -29.43641 -29.03149 -26.29834 -25.70952 -24.24144 -23.07602 -22.55985 -21.92970 -20.98257 -20.23576 -19.51225 -18.42956 -17.74445 -17.42807 -17.30592 -16.79257 -16.39438 -15.93036 -15.68902 -15.31346 -15.10477 -14.86266 -14.58814 -14.37285 -14.07139 -13.90461 -13.71332 -13.35304 -13.14464 -12.77875 -12.57639 -12.46285 -12.27856 -12.15179 -12.08673 -11.87503 -11.59763 -11.35091 -11.19763 -10.99292 -10.92277 -10.53850 -10.39296 -10.07596 -8.96106 -8.89199 -8.11260 -6.19511 -0.85133 0.33038 0.37072 0.89732 1.25574 1.45711 1.47442 1.54542 1.61506 2.45522 2.46695 2.72245 3.02836 3.19704 3.24873 3.49203 3.62224 3.94251 4.06188 4.18033 4.27019 4.32359 4.39418 4.60932 4.65098 4.80689 4.85592 4.87461 4.90219 4.99712 5.05170 5.14137 5.22091 5.28831 5.35197 5.39365 5.46690 5.57747 5.76088 6.17104 6.36489 6.59283 6.67826 6.82452 6.96177 7.49499 8.98158 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.004100 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.831820 B = 6827.946796 C = 8120.674519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.211 3.789 10 N -0.517 5.517 11 C 0.106 3.894 12 C 0.406 3.594 13 N -0.486 5.486 14 C 0.169 3.831 15 C -0.143 4.143 16 C -0.140 4.140 17 S 0.206 5.794 18 C -0.380 4.380 19 C 0.569 3.431 20 O -0.572 6.572 21 N -0.625 5.625 22 H 0.433 0.567 23 C 0.096 3.904 24 C -0.137 4.137 25 C -0.195 4.195 26 C -0.154 4.154 27 H 0.262 0.738 28 H 0.020 0.980 29 H -0.030 1.030 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.223 0.777 34 H 0.090 0.910 35 H 0.012 0.988 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -16.381 -3.319 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.085 3.915 10 N -0.241 5.241 11 C -0.025 4.025 12 C 0.135 3.865 13 N -0.208 5.208 14 C 0.042 3.958 15 C -0.173 4.173 16 C -0.277 4.277 17 S 0.471 5.529 18 C -0.501 4.501 19 C 0.365 3.635 20 O -0.453 6.453 21 N -0.269 5.269 22 H 0.274 0.726 23 C -0.032 4.032 24 C -0.156 4.156 25 C -0.232 4.232 26 C -0.191 4.191 27 H 0.071 0.929 28 H 0.038 0.962 29 H -0.012 1.012 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.188 0.812 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.582 -17.130 -3.331 20.409 hybrid contribution -1.376 1.900 1.101 2.592 sum 9.206 -15.230 -2.230 17.935 Atomic orbital electron populations 1.70054 1.07421 1.27589 1.52059 1.25707 0.95503 1.02437 0.95253 0.85648 0.78265 0.79073 0.78851 1.20035 1.21334 1.19310 1.21430 0.93503 0.91097 1.49375 0.92131 1.19423 0.89907 0.87829 0.94312 1.61711 1.30955 1.05530 1.25929 1.21055 0.91484 0.96458 0.93471 1.23149 0.90321 0.91002 0.81999 1.68733 1.20044 1.14064 1.17922 1.19723 0.90129 0.92498 0.93418 1.19745 1.00238 0.99627 0.97665 1.26285 0.98488 1.01480 1.01458 1.83965 1.28813 1.39455 1.00714 1.24726 1.11115 1.15892 0.98350 1.16009 0.80097 0.79069 0.88336 1.90934 1.48781 1.62232 1.43402 1.44233 1.28213 1.40225 1.14259 0.72593 1.21680 0.95640 0.92879 0.93023 1.22030 0.95323 1.01941 0.96310 1.23015 0.94080 1.02759 1.03369 1.22973 1.02605 0.91994 1.01562 0.92942 0.96183 1.01232 0.86847 0.90306 0.81246 0.76011 0.89196 0.96939 0.89148 0.89889 0.89556 0.87577 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.45 13.29 21.45 0.28 -53.16 16 2 C 0.01 0.50 5.46 84.65 0.46 0.97 16 3 Si 0.96 42.78 29.54 68.60 2.03 44.80 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.52 -27.11 8.61 25.60 0.22 -26.89 16 8 H 0.06 3.14 7.66 -2.91 -0.02 3.12 16 9 C 0.21 10.17 4.59 85.56 0.39 10.56 16 10 N -0.52 -19.94 4.06 -905.36 -3.67 -23.62 16 11 C 0.11 3.35 5.23 85.55 0.45 3.80 16 12 C 0.41 11.91 7.22 138.12 1.00 12.91 16 13 N -0.49 -15.02 7.41 -180.48 -1.34 -16.36 16 14 C 0.17 4.68 7.01 38.95 0.27 4.95 16 15 C -0.14 -2.92 10.15 21.50 0.22 -2.70 16 16 C -0.14 -2.05 11.13 66.64 0.74 -1.31 16 17 S 0.21 4.24 23.30 -56.49 -1.32 2.92 16 18 C -0.38 -10.80 6.49 23.30 0.15 -10.65 16 19 C 0.57 17.76 7.76 85.04 0.66 18.42 16 20 O -0.57 -20.62 17.97 -5.17 -0.09 -20.72 16 21 N -0.63 -16.71 5.28 -310.35 -1.64 -18.35 16 22 H 0.43 9.21 8.78 -92.71 -0.81 8.39 16 23 C 0.10 3.23 4.72 86.30 0.41 3.63 16 24 C -0.14 -4.52 4.97 -10.79 -0.05 -4.57 16 25 C -0.20 -6.02 10.00 30.62 0.31 -5.71 16 26 C -0.15 -3.88 10.25 30.62 0.31 -3.56 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.02 1.07 6.98 -2.39 -0.02 1.05 16 29 H -0.03 -1.54 8.00 -2.39 -0.02 -1.55 16 30 H 0.11 3.73 7.32 -2.39 -0.02 3.71 16 31 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 32 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.09 2.83 5.64 -2.39 -0.01 2.81 16 35 H 0.01 0.43 7.79 -2.38 -0.02 0.41 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 38 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -68.08 351.05 0.06 -68.02 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.27 Total: 16.61 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.54 Total: -0.15 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -6.36 Total: -111.49 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.09 Total: -20.72 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.32 Total: 2.92 kcal Total: -68.08 0.06 -68.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174691871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.406 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds